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Author Correction: BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

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Nature methods 2024年第10期21卷 1959页

作者： Linus Manubens-Gil Zhi Zhou Hanbo Chen Arvind Ramanathan Xiaoxiao Liu Yufeng Liu Alessandro Bria Todd Gillette Zongcai Ruan Jian Yang Miroslav Radojević Ting Zhao Li Cheng Lei Qu Siqi Liu Kristofer E Bouchard Lin Gu Weidong Cai Shuiwang Ji Badrinath Roysam Ching-Wei Wang Hongchuan Yu Amos Sironi Daniel Maxim Iascone Jie Zhou Erhan Bas Eduardo Conde-Sousa Paulo Aguiar Xiang Li Yujie Li Sumit Nanda Yuan Wang Leila Muresan Pascal Fua Bing Ye Hai-Yan He Jochen F Staiger Manuel Peter Daniel N Cox Michel Simonneau Marcel Oberlaender Gregory Jefferis Kei Ito Paloma Gonzalez-Bellido Jinhyun Kim Edwin Rubel Hollis T Cline Hongkui Zeng Aljoscha Nern Ann-Shyn Chiang Jianhua Yao Jane Roskams Rick Livesey Janine Stevens Tianming Liu Chinh Dang Yike Guo Ning Zhong Georgia Tourassi Sean Hill Michael Hawrylycz Christof Koch Erik Meijering Giorgio A Ascoli Hanchuan Peng Institute for Brain and Intelligence Southeast University Nanjing China. Microsoft Corporation Redmond WA USA. Tencent AI Lab Bellevue WA USA. Computing Environment and Life Sciences Directorate Argonne National Laboratory Lemont IL USA. Kaya Medical Seattle WA USA. University of Cassino and Southern Lazio Cassino Italy. Center for Neural Informatics Structures and Plasticity Krasnow Institute for Advanced Study George Mason University Fairfax VA USA. Faculty of Information Technology Beijing University of Technology Beijing China. Beijing International Collaboration Base on Brain Informatics and Wisdom Services Beijing China. Nuctech Netherlands Rotterdam the Netherlands. Janelia Research Campus Howard Hughes Medical Institute Ashburn VA USA. Department of Electrical and Computer Engineering University of Alberta Edmonton Alberta Canada. Ministry of Education Key Laboratory of Intelligent Computation and Signal Processing Anhui University Hefei China. Paige AI New York NY USA. Scientific Data Division and Biological Systems and Engineering Division Lawrence Berkeley National Lab Berkeley CA USA. Helen Wills Neuroscience Institute and Redwood Center for Theoretical Neuroscience UC Berkeley Berkeley CA USA. RIKEN AIP Tokyo Japan. Research Center for Advanced Science and Technology (RCAST) The University of Tokyo Tokyo Japan. School of Computer Science University of Sydney Sydney New South Wales Australia. Texas A&M University College Station TX USA. Cullen College of Engineering University of Houston Houston TX USA. Graduate Institute of Biomedical Engineering National Taiwan University of Science and Technology Taipei Taiwan. National Centre for Computer Animation Bournemouth University Poole UK. PROPHESEE Paris France. Department of Neuroscience Columbia University New York NY USA. Mortimer B. Zuckerman Mind Brain Behavior Institute Columbia University New York NY USA. Department of Computer Science Northern Illinois Universit

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Thalamo-cortical structural co-variation networks are related to familial risk for schizophrenia in the context of lower nuclei volume estimates in patients: an ENIGMA study

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Biological psychiatry 2025年

作者： Annalisa Lella Linda A Antonucci Roberta Passiatore Loredana Bellantuono Pierluigi Selvaggi Teresa Popolizio Guido Di Sciascio Alessandro Saponaro Patrizia Ricci Mario Altamura Giuseppe Blasi Antonio Rampino Chris Vriend Vince D Calhoun Kelly Rootes-Murdy Aaron L Goldman Inmaculada Baeza Josefina Castro-Fornieles Gisela Sugranyes Elena De la Serna Edith Pomarol-Clotet Mar Fatjó-Vilas Raymond Salvador Andriana Karuk Paola Fuentes-Claramonte David C Glahn Amanda L Rodrigue John Blangero Lei Wang Taeyoung Lee Karolin E Einenkel Saskia Hamers Oliver Gruber Adrian Preda Young-Chul Chung Soyolsaikhan Odkhuu Corentin Vallée Paola Dazzan Machteld Marcelis Stijn Michielse Katharina Brosch Frederike Stein Igor Nenadić Benjamin Straube Florian Thomas-Odenthal Tilo Kircher Sean Carruthers Susan L Rossell Phillip J Sumner Tamsyn E Van Rheenen Caroline Demro Ian S Ramsay Scott R Sponheim Rebekka Lencer Susanne Meinert Tim Hahn Udo Dannlowski Dominik Grotegerd Mariateresa Ciccarelli Felice Iasevoli Giuseppe Pontillo Godfrey D Pearlson Derin Cobia Fabrizio Piras Nerisa Banaj Daniela Vecchio Marjolein E A Barendse Neeltje E M van Haren Hang Joon Jo Kang Sim Yann Quidé Melissa J Green Rachael Slate Giacomo Cecere Wolfgang Omlor Stephanie Homan Philipp Homan Sophia I Thomopoulos Jessica A Turner Theo G M van Erp Paul M Thompson Alessandro Bertolino Giulio Pergola Department of Translational Biomedicine and Neuroscience (DiBraiN)-University of Bari Aldo Moro Bari Italy. Department of Translational Biomedicine and Neuroscience (DiBraiN)-University of Bari Aldo Moro Bari Italy Lieber Institute for Brain Development Johns Hopkins Medical Campus Baltimore MD USA. Istituto Nazionale di Fisica Nucleare Bari Italy. Azienda Ospedaliero-Universitaria Consorziale Policlinico Bari Italy. Neuroradiology Unit Scientific Institute for Research Hospitalization and Health Care Casa Sollievo della Sofferenza 71013 San Giovanni Rotondo Foggia Italy. Department of Mental Health ASL Bari Bari Italy. Department of Mental Health ASL Brindisi Brindisi Italy. Department of Mental Health ASL Barletta Andria Trani BAT Italy. Department of Clinical and Experimental Medicine University of Foggia Italy. Amsterdam UMC Vrije Universiteit Amsterdam Department of Psychiatry and Department of Anatomy and Neuroscience de Boelelaan 1117 Amsterdam the Netherlands Compulsivity Impulsivity and Attention Amsterdam Neuroscience de Boelelaan 1117 Amsterdam the Netherlands. Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS) Georgia Institute of Technology Georgia State University Emory University Atlanta GA USA. Department of Child and Adolescent Psychiatry and Psychology 2021 SGR 01319 Institute of Neuroscience Hospital Clínic Barcelona Barcelona University of Barcelona Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS) CIBERSAM Spain. FIDMAG Germanes Hospitalàries Research Foundation CIBERSAM ISCIII Barcelona Spain. Department of Psychiatry and Behavioral Sciences Boston Children's Hospital Boston MA USA Department of Psychiatry Harvard Medical School Boston MA USA Olin Neuropsychiatry Research Center Institute of Living Hartford CT USA. Department of Psychiatry Harvard Medical School Boston MA USA. Department of Human Genetics and South Texas Diabetes and Obesity Institute School of

BACKGROUND:Structural brain differences in the thalamus and the cortex have been widely reported in schizophrenia (SCZ) relative to neurotypical controls (NC). Most prior studies examined the thalamus as a whole, single region-of-interest. Additionally, findings in individuals at familial high-risk for schizophrenia (FHR) remain inconclusive. Here, we investigated whether local and network-wide thalamic-related structural alterations vary as a function of familial risk for schizophrenia. METHODS:Structural MRI scans were obtained from 5,197 participants (3,409 NC, 257 FHR, 1,531 SCZ) across 32 cross-sectional samples within the ENIGMA Consortium. Random-effects meta-analyses, and network analyses were conducted on (i) local thalamic alterations (volume estimates of seven thalamic subdivisions), and (ii) network-wide thalamic alterations (thickness and surface-related thalamo-cortical/cortico-cortical co-variation patterns) across groups (NC, FHR, SCZ). RESULTS:Individuals with SCZ showed significantly lower gray matter volume estimates in the anterior, pulvinar, medial, posterior, and ventral thalamic subdivisions compared to NC (q<0.05). FHR did not differ from NC. At the network-wide level, thalamo-cortical co-variations discriminated FHR from NC (q<0.05), with FHR showing intermediate co-variation between SCZ and NC. Cortico-cortical co-variation patterns revealed that SCZ and FHR shared similarly disconnected clustering configurations, distinct from NC (q<0.05). CONCLUSIONS:Results revealed lower thalamic volume estimates in SCZ but not in FHR, hence yielding no evidence of a familial risk trait, whereas thalamo-cortical and cortico-cortical co-variation estimates were associated with familial risk for SCZ These findings suggest that, once the thalamus is parsed into subdivisions, network-wide thalamo-cortical features may identify trait-dependent, neurobiological correlates of genetic risk for SCZ.

关键词： Familial high risk for schizophrenia meta-analyses morphometric measures structural neuroimaging thalamic subdivisions thalamo-cortical networks

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Performance optimization of a clustering adaptive gravitational search scheme for wireless sensor networks 17th

Performance optimization of a clustering adaptive gravitatio...

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17th International Conference on Next Generation Teletraffic and Wired/Wireless Advanced Networks and Systems, NEW2AN 2017, 10th Conference on Internet of Things and Smart Spaces, ruSMART 2017 and 3rd International Workshop on Nano-scale Computing and Communications, NsCC 2017

作者： Pourabdollah, Elham Mohammadi Asl, Reza Tsiligiridis, Theodore Information Technology Engineering Department Faculty of Electrical and Computer Engineering University of Tabriz Tabriz Iran Control Engineering Department Faculty of Electrical and Computer Engineering University of Tabriz Tabriz Iran Informatics Laboratory Department of Economics and Rural Development Agricultural University of Athens Athens Greece

ISBN: (纸本)9783319673790

In this research we propose a new clustering scheme based on a combination of a well known stochastic, population-based Gravitational Search Algorithm (GSA) and the k-means algorithm to select optimal reference nodes in a Wireless Sensor Networks (WSN). In the proposed scheme the process of grouping sensors into clusters reference nodes is based on a K-means clustering algorithm to divide the initial population and select the best position in the neighbourhood to exchange information between clusters. In cases when sensor nodes receive multiple synchronization messages from more than one reference node a weighted average method is used. In this paper we limit our research on a number of benchmark functions which are used to compare the performance of the proposed algorithm with other important meta-heuristic algorithms to show its superiority. © 2017, Springer International Publishing AG.

关键词： Sensor nodes

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Inside Cover: A novel in vivo Cerenkov luminescence image-guided surgery on primary and metastatic colorectal cancer (J. Biophotonics 3/2020)

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Journal of Biophotonics 2020年第3期13卷

作者： Zeyu Zhang Yawei Qu Yu Cao Xiaojing Shi Hongbo Guo Xiaojun Zhang Sheng Zheng Haifeng Liu Zhenhua Hu Jie Tian Engineering Research Center of Molecular and Neuro Imaging of Ministry of Education School of Life Science and Technology Xidian University Xi'an China CAS Key Laboratory of Molecular Imaging Beijing Key Laboratory of Molecular Imaging The State Key Laboratory of Management and Control for Complex Systems Institute of Automation Chinese Academy of Sciences Beijing China Department of Gastroenterology the Third Medical Centre Chinese PLA General Hospital Beijing China Department of Control Science and Engineering Harbin Institute of Technology Harbin China Department of Anorectal the Third medical Centre Chinese PLA General Hospital Beijing China University of Chinese Academy of Sciences Beijing China School of Information Sciences and Technology Northwest University Xi'an China Department of Nuclear Medicine Chinese PLA General Hospital Beijing China Beijing Advanced Innovation Center for Big Data-Based Precision Medicine School of Medicine Beihang University Beijing China

This study presents a novel intraoperative in vivo imaging approach which harnessed Cerenkov luminescence (CL) to detect primary and metastatic colorectal cancer (CRC) using clinically approved radiopharmaceuticals. In the mice and swine experiments, the proposed approach effectively improved the effect of CRC surgery. The approach is believed to be promising for utilizing CL in open surgery. Further details can be found in the article by Zeyu Zhang, Yawei Qu, Yu Cao et al. ( e201960152 )

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NIMG-29. ASSOCIATION OF PARTIAL T2-FLAIR MISMATCH SIGN AND ISOCITRATE DEHYDROGENASE MUTATION IN WHO GRADE 4 GLIOMA/GLIOBLASTOMA: RESULTS FROM THE RESPOND CONSORTIUM

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Neuro-Oncology 2022年第SUPPLEMENT_7期24卷 vii168–vii169页

作者： Lee, Matthew Sako, Chiharu Patel, Sohil Mohan, Suyash Balana, Carmen Barnholtz-Sloan, Jill Sloan, Andrew Badve, Chaitra Poisson, Laila Griffith, Brent Booth, Thomas Palmer, Joshua Chakravarti, Arnab Bakas, Spyridon Nasrallah, MacLean Choi, Yoon Seong Dicker, Adam Flanders, Adam Shi, Wenyin Mahajan, Abhishek Colen, Rivka Marcus, Daniel Orringer, Daniel Davatzikos, Christos Jain, Rajan Department of Radiology NYU Grossman School of Medicine New York NY USA Center for Biomedical Image Computing and Analytics and Department of Radiology Perelman School of Medicine University of Pennsylvania Philadelphia USA Department of Radiology University of Virginia School of Medicine Charlottesville USA Center for Biomedical Image Computing and Analytics Department of Radiology Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Medical Oncology Department Catalan Institute of Oncology Barcelona Spain Center for Biomedical Informatics and Information Technology and Division of Cancer Epidemiology and Genetics National Cancer Institute Bethesda MD USA Department of Pathology and Department of Neurosurgery Case Western Reserve University and University Hospitals Cleveland Medical Center Seidman Cancer Center and Case Comprehensive Cancer Center Cleveland USA Department of Radiology Case Western Reserve University and University Hospitals Cleveland Medical Center Cleveland USA Department of Public Health Sciences Center for Bioinformatics Henry Ford Health System Detroit MI USA Department of Radiology Henry Ford Health System Detroit MI USA School of Biomedical Engineering and Imaging Sciences King’s College London United Kingdom The Department of Radiation Oncology The James Cancer Hospital Ohio State University Wexner Medical Center Columbus OH USA Department of Radiation Oncology Ohio State University Wexner Medical Center Columbus OH USA Center for Biomedical Image Computing and Analytics Department of Radiology and Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Radiology Yonsei University College of Medicine Seoul Republic of Korea Department of Radiation Oncology Sidney Kimmel Cancer Center Thomas Jefferson

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Genome-wide association study of lung adenocarcinoma in East Asia and comparison with a European population

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Nature communications 2023年第1期14卷 3043页

作者： Jianxin Shi Kouya Shiraishi Jiyeon Choi Keitaro Matsuo Tzu-Yu Chen Juncheng Dai Rayjean J Hung Kexin Chen Xiao-Ou Shu Young Tae Kim Maria Teresa Landi Dongxin Lin Wei Zheng Zhihua Yin Baosen Zhou Bao Song Jiucun Wang Wei Jie Seow Lei Song I-Shou Chang Wei Hu Li-Hsin Chien Qiuyin Cai Yun-Chul Hong Hee Nam Kim Yi-Long Wu Maria Pik Wong Brian Douglas Richardson Karen M Funderburk Shilan Li Tongwu Zhang Charles Breeze Zhaoming Wang Batel Blechter Bryan A Bassig Jin Hee Kim Demetrius Albanes Jason Y Y Wong Min-Ho Shin Lap Ping Chung Yang Yang She-Juan An Hong Zheng Yasushi Yatabe Xu-Chao Zhang Young-Chul Kim Neil E Caporaso Jiang Chang James Chung Man Ho Michiaki Kubo Yataro Daigo Minsun Song Yukihide Momozawa Yoichiro Kamatani Masashi Kobayashi Kenichi Okubo Takayuki Honda Dean H Hosgood Hideo Kunitoh Harsh Patel Shun-Ichi Watanabe Yohei Miyagi Haruhiko Nakayama Shingo Matsumoto Hidehito Horinouchi Masahiro Tsuboi Ryuji Hamamoto Koichi Goto Yuichiro Ohe Atsushi Takahashi Akiteru Goto Yoshihiro Minamiya Megumi Hara Yuichiro Nishida Kenji Takeuchi Kenji Wakai Koichi Matsuda Yoshinori Murakami Kimihiro Shimizu Hiroyuki Suzuki Motonobu Saito Yoichi Ohtaki Kazumi Tanaka Tangchun Wu Fusheng Wei Hongji Dai Mitchell J Machiela Jian Su Yeul Hong Kim In-Jae Oh Victor Ho Fun Lee Gee-Chen Chang Ying-Huang Tsai Kuan-Yu Chen Ming-Shyan Huang Wu-Chou Su Yuh-Min Chen Adeline Seow Jae Yong Park Sun-Seog Kweon Kun-Chieh Chen Yu-Tang Gao Biyun Qian Chen Wu Daru Lu Jianjun Liu Ann G Schwartz Richard Houlston Margaret R Spitz Ivan P Gorlov Xifeng Wu Ping Yang Stephen Lam Adonina Tardon Chu Chen Stig E Bojesen Mattias Johansson Angela Risch Heike Bickeböller Bu-Tian Ji H-Erich Wichmann David C Christiani Gadi Rennert Susanne Arnold Paul Brennan James McKay John K Field Sanjay S Shete Loic Le Marchand Geoffrey Liu Angeline Andrew Lambertus A Kiemeney Shan Zienolddiny-Narui Kjell Grankvist Mikael Johansson Angela Cox Fiona Taylor Jian-Min Yuan Philip Lazarus Matthew B Schabath Melinda C Aldrich Hyo-Sung Jeon Shih Sheng Jiang Jae Sook Sung C Division of Cancer Epidemiology and Genetics National Cancer Institute Rockville MD USA. jianxin.shi@nih.gov. Division of Genome Biology National Cancer Research Institute Tokyo Japan. Division of Cancer Epidemiology and Genetics National Cancer Institute Rockville MD USA. Division of Cancer Epidemiology and Prevention Aichi Cancer Center Research Institute Nagoya Japan. Institute of Population Health Sciences National Health Research Institutes Zhunan Taiwan. Department of Epidemiology School of Public Health Nanjing Medical University Nanjing China. Jiangsu Key Lab of Cancer Biomarkers Prevention and Treatment Collaborative Innovation Center for Cancer Medicine Nanjing Medical University Nanjing China. Prosserman Centre for Population Health Research Lunenfeld-Tanenbaum Research Institute Sinai Health Toronto ON Canada. Department of Epidemiology and Biostatistics National Clinical Research Center for Cancer Key Laboratory of Molecular Cancer Epidemiology of Tianjin Tianjin Medical University Cancer Institute and Hospital Tianjin Medical University Tianjin China. Division of Epidemiology Department of Medicine Vanderbilt University Medical Center and Vanderbilt-Ingram Cancer Center Nashville TN USA. Cancer Research Institute Seoul National University College of Medicine Seoul Republic of Korea. Department of Etiology & Carcinogenesis and State Key Laboratory of Molecular Oncology Cancer Institute and Hospital Chinese Academy of Medical Sciences and Peking Union Medical College Beijing China. Department of Epidemiology School of Public Health China Medical University Shenyang China. Department of Clinical Epidemiology and Center of Evidence Based Medicine The First Hospital of China Medical University Shenyang China. Department of Oncology Shandong Cancer Hospital and Institute Shandong Academy of Medical Sciences Jinan China. Ministry of Education Key Laboratory of Contemporary Anthropology School of Life Sciences Fudan University Shanghai China. S

Lung adenocarcinoma is the most common type of lung cancer. Known risk variants explain only a small fraction of lung adenocarcinoma heritability. Here, we conducted a two-stage genome-wide association study of lung adenocarcinoma of East Asian ancestry (21,658 cases and 150,676 controls; 54.5% never-smokers) and identified 12 novel susceptibility variants, bringing the total number to 28 at 25 independent loci. Transcriptome-wide association analyses together with colocalization studies using a Taiwanese lung expression quantitative trait loci dataset (n = 115) identified novel candidate genes, including FADS1 at 11q12 and ELF5 at 11p13. In a multi-ancestry meta-analysis of East Asian and European studies, four loci were identified at 2p11, 4q32, 16q23, and 18q12. At the same time, most of our findings in East Asian populations showed no evidence of association in European populations. In our studies drawn from East Asian populations, a polygenic risk score based on the 25 loci had a stronger association in never-smokers vs. individuals with a history of smoking (P = 0.0058). These findings provide new insights into the etiology of lung adenocarcinoma in individuals from East Asian populations, which could be important in developing translational applications.

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Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women

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Genomics 2020年第2期112卷 1223-1232页

作者： Jason Y Y Wong Han Zhang Chao A Hsiung Kouya Shiraishi Kai Yu Keitaro Matsuo Maria Pik Wong Yun-Chul Hong Jiucun Wang Wei Jie Seow Zhaoming Wang Minsun Song Hee Nam Kim I-Shou Chang Nilanjan Chatterjee Wei Hu Chen Wu Tetsuya Mitsudomi Wei Zheng Jin Hee Kim Adeline Seow Neil E Caporaso Min-Ho Shin Lap Ping Chung She-Juan An Ping Wang Yang Yang Hong Zheng Yasushi Yatabe Xu-Chao Zhang Young Tae Kim Qiuyin Cai Zhihua Yin Young-Chul Kim Bryan A Bassig Jiang Chang James Chung Man Ho Bu-Tian Ji Yataro Daigo Hidemi Ito Yukihide Momozawa Kyota Ashikawa Yoichiro Kamatani Takayuki Honda H Dean Hosgood Hiromi Sakamoto Hideo Kunitoh Koji Tsuta Shun-Ichi Watanabe Michiaki Kubo Yohei Miyagi Haruhiko Nakayama Shingo Matsumoto Masahiro Tsuboi Koichi Goto Jianxin Shi Lei Song Xing Hua Atsushi Takahashi Akiteru Goto Yoshihiro Minamiya Kimihiro Shimizu Kazumi Tanaka Fusheng Wei Fumihiko Matsuda Jian Su Yeul Hong Kim In-Jae Oh Fengju Song Wu-Chou Su Yu-Min Chen Gee-Chen Chang Kuan-Yu Chen Ming-Shyan Huang Li-Hsin Chien Yong-Bing Xiang Jae Yong Park Sun-Seog Kweon Chien-Jen Chen Kyoung-Mu Lee Batel Blechter Haixin Li Yu-Tang Gao Biyun Qian Daru Lu Jianjun Liu Hyo-Sung Jeon Chin-Fu Hsiao Jae Sook Sung Ying-Huang Tsai Yoo Jin Jung Huan Guo Zhibin Hu Wen-Chang Wang Charles C Chung Laurie Burdett Meredith Yeager Amy Hutchinson Sonja I Berndt Wei Wu Herbert Pang Yuqing Li Jin Eun Choi Kyong Hwa Park Sook Whan Sung Li Liu C H Kang Meng Zhu Chung-Hsing Chen Tsung-Ying Yang Jun Xu Peng Guan Wen Tan Chih-Liang Wang Michael Hsin Ko-Yung Sit James Ho Ying Chen Yi Young Choi Jen-Yu Hung Jun Suk Kim Ho Il Yoon Chien-Chung Lin In Kyu Park Ping Xu Yuzhuo Wang Qincheng He Reury-Perng Perng Chih-Yi Chen Roel Vermeulen Junjie Wu Wei-Yen Lim Kun-Chieh Chen Yao-Jen Li Jihua Li Hongyan Chen Chong-Jen Yu Li Jin Tzu-Yu Chen Shih-Sheng Jiang Jie Liu Taiki Yamaji Belynda Hicks Kathleen Wyatt Shengchao A Li Juncheng Dai Hongxia Ma Guangfu Jin Bao Song Zhehai Wang Sensen Cheng Xuelian Li Yangwu Ren Ping Cui Motoki Iwasaki Taichi Shimazu Shoichiro Tsugane Junjie Division of Cancer Epidemiology and Genetics National Cancer Institute Bethesda MD USA. Electronic address: jason.wong@nih.gov. Division of Cancer Epidemiology and Genetics National Cancer Institute Bethesda MD USA. Institute of Population Health Sciences National Health Research Institutes Zhunan Taiwan. Division of Genome Biology National Cancer Center Research Institute Tokyo Japan. Division of Cancer Epidemiology and Prevention Aichi Cancer Center Research Institute Nagoya Japan Department of Cancer Epidemiology Nagoya University Graduate School of Medicine Nagoya Japan. Department of Pathology Queen Mary Hospital The University of Hong Kong Hong Kong. Department of Preventive Medicine Seoul National University College of Medicine Seoul Republic of Korea. Ministry of Education Key Laboratory of Contemporary Anthropology School of Life Sciences Fudan University Shanghai China State Key Laboratory of Genetic Engineering School of Life Sciences Fudan University Shanghai China. Saw Swee Hock School of Public Health National University of Singapore Singapore. Cancer Genomics Research Laboratory Leidos Biomedical Research Inc Gaithersburg MD USA Department of Computational Biology St. Jude Children's Research Hospital Memphis TN USA. Division of Cancer Epidemiology and Genetics National Cancer Institute Bethesda MD USA Department of Statistics Sookmyung Women's University Seoul Republic of Korea. Department of Preventive Medicine Chonnam National University Medical School Gwangju Republic of Korea. National Institute of Cancer Research National Health Research Institutes Zhunan Taiwan. Bloomberg School of Public Health Johns Hopkins University Baltimore MD USA. Department of Etiology & Carcinogenesis and State Key Laboratory of Molecular Oncology Cancer Institute and Hospital Chinese Academy of Medical Sciences and Peking Union Medical College Beijing China. Division of Thoracic Surgery Kinki University School of Medicine Sayama Japan. Division of

We investigated whether genetic susceptibility to tuberculosis (TB) influences lung adenocarcinoma development among never-smokers using TB genome-wide association study (GWAS) results within the Female Lung Cancer Consortium in Asia. Pathway analysis with the adaptive rank truncated product method was used to assess the association between a TB-related gene-set and lung adenocarcinoma using GWAS data from 5512 lung adenocarcinoma cases and 6277 controls. The gene-set consisted of 31 genes containing known/suggestive associations with genetic variants from previous TB-GWAS. Subsequently, we followed-up with Mendelian Randomization to evaluate the association between TB and lung adenocarcinoma using three genome-wide significant variants from previous TB-GWAS in East Asians. The TB-related gene-set was associated with lung adenocarcinoma (p = 0.016). Additionally, the Mendelian Randomization showed an association between TB and lung adenocarcinoma (OR = 1.31, 95% CI: 1.03, 1.66, p = 0.027). Our findings support TB as a causal risk factor for lung cancer development among never-smoking Asian women.

关键词： Lung adenocarcinoma Lung cancer Mendelian randomization Pathway analysis Tuberculosis

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Building an international consortium for tracking coronavirus health status (vol 78, pg 931, 2020)

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NATURE MEDICINE 2020年第8期26卷 1309-1309页

作者： Segal, Eran Zhang, Feng Lin, Xihong King, Gary Shalem, Ophir Shilo, Smadar Allen, William E. Alquaddoomi, Faisal Altae-Tran, Han Anders, Simon Balicer, Ran Bauman, Tal Bonilla, Ximena Booman, Gisel Chan, Andrew T. Cohen, Ori Coletti, Silvano Davidson, Natalie Dor, Yuval Drew, David A. Elemento, Olivier Evans, Georgina Ewels, Phil Gale, Joshua Gavrieli, Amir Geiger, Benjamin Grad, Yonatan H. Greene, Casey S. Hajirasouliha, Iman Jerala, Roman Kahles, Andre Kallioniemi, Olli Keshet, Ayya Kocarev, Ljupco Landua, Gregory Meir, Tomer Muller, Aline Nguyen, Long H. Oresic, Matej Ovchinnikova, Svetlana Peterson, Hedi Prodanova, Jana Rajagopal, Jay Raetsch, Gunnar Rossman, Hagai Rung, Johan Sboner, Andrea Sigaras, Alexandros Spector, Tim Steinherz, Ron Stevens, Irene Vilo, Jaak Wilmes, Paul Department of Computer Science and Applied Mathematics and Department of Molecular Cell Biology Weizmann Institute of Science Rehovot Israel Howard Hughes Medical Institute Chevy Chase Maryland USA Broad Institute of MIT and Harvard Cambridge USA Departments of Biostatistics and Statistics Harvard T.H. Chan School of Public Health Harvard University Cambridge USA Institute for Quantitative Social Science Harvard University Cambridge USA Department of Genetics Perelman School of Medicine University of Pennsylvania Philadelphia USA Pediatric Diabetes Unit Ruth Rappaport Children’s Hospital Rambam Healthcare Campus Haifa Israel Harvard Society of Fellows Harvard University Cambridge USA ETH Zurich NEXUS Personalized Health Technologies Zurich Switzerland Department of Biological Engineering Massachusetts Institute of Technology Cambridge USA Center for Molecular Biology (ZMBH) University of Heidelberg Heidelberg Germany Clalit Research Institute Clalit Health Services Ramat Gan Israel Mapping and Geo-Information Engineering Civil and Environmental Engineering Faculty The Technion Haifa Israel ETH Zurich Department for Computer Science Zurich University Hospital Zurich Medical Informatics Zurich and SIB Swiss Institute of Bioinformatics Zurich Switzerland Regen Network Mar del Plata Argentina Massachusetts General Hospital (MGH) Boston USA Chelonia Applied Science Allschwil Switzerland IMRIC Developmental Biology and Cancer Research School of Medicine The Hebrew University Jerusalem Israel Englander Institute for Precision Medicine Weill Cornell Medicine New York USA Department of Physiology and Biophysics Weill Cornell Medicine New York USA Science for Life Laboratory (SciLifeLab) Department of Biochemistry and Biophysics Stockholm University Stockholm Sweden http://*** Canada Department of Immunology Weizmann Institute of Science Rehovot Israel Department of Immunology and Infectious Diseases Harvard T.H. Chan School of Public Health Harvar

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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WaaS architecture-driven depressive mood status quantitative analysis based on forehead EEG and self-rating tool

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Brain informatics 2018年第2期5卷 15-15页

作者： Wan, Zhijiang Zhang, Hao Chen, Jianhui Zhou, Haiyan Yang, Jie Zhong, Ning Department of Life Science and Informatics Maebashi Institute of Technology Maebashi3710864 Japan College of Economics and Management Nanjing Forestry University Nanjing210037 China College of Electronic Information and Control Engineering Beijing University of Technology Beijing100124 China International WIC Institute Beijing University of Technology Beijing100088 China Beijing Anding Hospital of Capital Medical University Beijing100088 China

Background: Although the objective depression evaluation is a hot topic in recent years, less is known concerning developing a pervasive and objective approach for quantitatively evaluating depression. Driven by the Wisdom as a Service architecture, a quantitative analysis method for rating depressive mood status based on forehead electroencephalograph (EEG) and an electronic diary log application named quantitative log for mental state (Q-Log) is proposed. A regression method based on random forest algorithm is adopted to train the quantitative model, where independent variables are forehead EEG features and the dependent variables are the first principal component (FPC) values of the Q-Log. Results: The Leave-One-Participant-Out Cross-Validation is adopted to estimate the performance of the quantitative model, and the result shows that the model outcomes have a moderate uphill relationship (the average coefficient equals 0.6556 and the P value less than 0.01) with the FPC values of the Q-Log. Furthermore, an exemplary application of knowledge sharing, which is developed by using ontology technology and Jena inference subsystem, is given to illustrate the preliminary work for annotating data and facilitating clinical users to understand the meaning of the quantitative analysis results. Conclusions: This method combining physiological sensor data with psychological self-rating data could provide new insights into the pervasive and objective depression evaluation processes in daily life. © 2018, The Author(s).

关键词： Regression analysis

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Global, regional, and national sex-specific burden and control of the HIV epidemic, 1990–2019, for 204 countries and territories: the Global Burden of Diseases Study 2019

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The Lancet HIV 2021年第10期8卷 e633-e651页

作者： Jahagirdar, Deepa Walters, Magdalene K. Novotney, Amanda Brewer, Edmond D. Frank, Tahvi D. Carter, Austin Biehl, Molly H. Abbastabar, Hedayat Abhilash, E.S. Abu-Gharbieh, Eman Abu-Raddad, Laith Jamal Adekanmbi, Victor Adeyinka, Daniel Adedayo Adnani, Qorinah Estiningtyas Sakilah Afzal, Saira Aghababaei, Soodabeh Ahinkorah, Bright Opoku Ahmad, Sajjad Ahmadi, Keivan Ahmadi, Sepideh Ahmadpour, Ehsan Ahmed, Muktar Beshir Rashid, Tarik Ahmed Salih, Yusra Ahmed Aklilu, Addis Akram, Tayyaba Akunna, Chisom Joyqueenet Al Hamad, Hanadi Alahdab, Fares Alanezi, Fahad Mashhour Aleksandrova, Ekaterina A. Alene, Kefyalew Addis Ali, Liaqat Alipour, Vahid Almustanyir, Sami Alvis-Guzman, Nelson Ameyaw, Edward Kwabena Amu, Hubert Andrei, Catalina Liliana Andrei, Tudorel Anvari, Davood Arabloo, Jalal Aremu, Olatunde Arulappan, Judie Atnafu, Desta Debalkie Quintanilla, Beatriz Paulina Ayala Ayza, Muluken Altaye Azari, Samad Darshan, B.B. Banach, Maciej Bärnighausen, Till Winfried Barra, Fabio Barrow, Amadou Basu, Sanjay Bazargan-Hejazi, Shahrzad Belay, Habtamu Gebrehana Berheto, Tezera Moshago Bezabhe, Woldesellassie Mequanint Bezabih, Yihienew Mequanint Bhagavathula, Akshaya Srikanth Bhardwaj, Nikha Bhardwaj, Pankaj Bhattacharyya, Krittika Bibi, Sadia Bijani, Ali Bisignano, Catherine Bolarinwa, Obasanjo Afolabi Boloor, Archith Boltaev, Azizbek A. Briko, Nikolay Ivanovich Buonsenso, Danilo Burkart, Katrin Butt, Zahid A. Cao, Chao Charan, Jaykaran Chatterjee, Souranshu Chattu, Soosanna Kumary Chattu, Vijay Kumar Choudhari, Sonali Gajanan Chu, Dinh-Toi Couto, Rosa A.S. Cowden, Richard G. Dachew, Berihun Assefa Dadras, Omid Dagnew, Amare Belachew Dahlawi, Saad M.A. Dai, Xiaochen Dandona, Lalit Dandona, Rakhi das Neves, José Degenhardt, Louisa Demeke, Feleke Mekonnen Desta, Abebaw Alemayehu Deuba, Keshab Dhamnetiya, Deepak Dhungana, Govinda Prasad Dianatinasab, Mostafa Diaz, Daniel Djalalinia, Shirin Doan, Linh Phuong Dorostkar, Fariba Edinur, Hisham Atan Effiong, Andem Eftekharzadeh, Sahar El Sayed Zaki, Maysaa Elayedath, Rajesh Elhadi, Institute for Health Metrics and Evaluation University of Washington Seattle WA United States Department of Health Metrics Sciences School of Medicine University of Washington Seattle WA United States Division of Allergy and Infectious Diseases University of Washington Seattle WA United States Department of Global Health University of Washington Seattle WA United States School of Social Work University of Washington Seattle WA United States Department of Medicine University of Washington Seattle WA United States Vagelos College of Physicians and Surgeones Columbia University Medical Center New York NY United States Division of Data Analytics and Delivery for Impact WHO Geneva Switzerland Advanced Diagnostic and Interventional Radiology Research Centre Tehran University of Medical Sciences Tehran Iran Multiple Sclerosis Research Centre Tehran University of Medical Sciences Tehran Iran School of Public Health Tehran University of Medical Sciences Tehran Iran Department of Epidemiology and Biostatistics Tehran University of Medical Sciences Tehran Iran Paediatric Chronic Kidney Disease Research Centre Tehran University of Medical Sciences Tehran Iran Department of Psychiatry Tehran University of Medical Sciences Tehran Iran Metabolomics and Genomics Research Centre Tehran University of Medical Sciences Tehran Iran Sina Trauma and Surgery Research Centre Tehran University of Medical Sciences Tehran Iran Research Centre for Immunodeficiencies Tehran University of Medical Sciences Tehran Iran Non-Communicable Diseases Research Centre Tehran University of Medical Sciences Tehran Iran Department of Botany Sree Narayana Guru College Chelannur Kozhikode India Clinical Sciences Department University of Sharjah Sharjah United Arab Emirates Mass Communication Department University of Sharjah Sharjah United Arab Emirates Department of Health-Care Policy and Research Weill Cornell Medical College in Qatar Doha Qatar Department of Population Medicine Ca

Background: The sustainable development goals (SDGs) aim to end HIV/AIDS as a public health threat by 2030. Understanding the current state of the HIV epidemic and its change over time is essential to this effort. This study assesses the current sex-specific HIV burden in 204 countries and territories and measures progress in the control of the epidemic. Methods: To estimate age-specific and sex-specific trends in 48 of 204 countries, we extended the Estimation and Projection Package Age-Sex Model to also implement the spectrum paediatric model. We used this model in cases where age and sex specific HIV-seroprevalence surveys and antenatal care-clinic sentinel surveillance data were available. For the remaining 156 of 204 locations, we developed a cohort-incidence bias adjustment to derive incidence as a function of cause-of-death data from vital registration systems. The incidence was input to a custom Spectrum model. To assess progress, we measured the percentage change in incident cases and deaths between 2010 and 2019 (threshold >75% decline), the ratio of incident cases to number of people living with HIV (incidence-to-prevalence ratio threshold <0·03), and the ratio of incident cases to deaths (incidence-to-mortality ratio threshold <1·0). Findings: In 2019, there were 36·8 million (95% uncertainty interval [UI] 35·1–38·9) people living with HIV worldwide. There were 0·84 males (95% UI 0·78–0·91) per female living with HIV in 2019, 0·99 male infections (0·91–1·10) for every female infection, and 1·02 male deaths (0·95–1·10) per female death. Global progress in incident cases and deaths between 2010 and 2019 was driven by sub-Saharan Africa (with a 28·52% decrease in incident cases, 95% UI 19·58–35·43, and a 39·66% decrease in deaths, 36·49–42·36). Elsewhere, the incidence remained stable or increased, whereas deaths generally decreased. In 2019, the global incidence-to-prevalence ratio was 0·05 (95% UI 0·05–0·06) and the global incidence-to-mortality ratio was

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