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18th European Symposium on Radiopharmacy and Radiopharmaceuticals Salzburg, Austria. 7-10 April 2016

EJNMMI RADIOPHARMACY AND CHEMISTRY 2016年第1期1卷 1-37页

作者： [Anonymous] Los Alamos National Laboratory Los Alamos USA Oak Ridge National Laboratory Oak Ridge USA Department of Nuclear Medicine Medical University Innsbruck Innsbruck Austria Department of Radiology & Nuclear Medicine Radboud University Medical Center Nijmegen The Netherlands Institute of Molecular and Translational Medicine Faculty of Medicine and Dentistry Palacky University Olomouc Czech Republic Département de Médecine Nucléaire et Radiobiologie Faculté de Médecine et Sciences de la Santé Université de Sherbrooke Sherbrooke Canada Centre d’Imagerie Moléculaire de Sherbrooke (CIMS) CR-CHUS Sherbrooke Canada Division of Molecular Biology/Biocenter Medical University Innsbruck Innsbruck Austria Department of Nuclear Medicine Radboud University Medical Center Nijmegen The Netherlands IENI-CNR Padua Italy DiSCOG-University of Padua Padua Italy IOV Padua Padua Italy IC-CNR Bari Italy IBB-CNR Naples Italy Laboratory of Radiopharmacy KU Leuven Leuven Belgium Micro Flow Chemistry & Process Technology Chemical Engineering and Chemistry Department TU Eindhoven Eindhoven The Netherlands Laboratory for Radiopharmacy University of Leuven Leuven Belgium Department of Nuclear Medicine and Molecular Imaging University of Leuven Leuven Belgium Department of Medicine and Surgery Tecnomed Foundation University of Milano-Bicocca Milan Italy Dipartimento di Biotecnologie Mediche e Medicina Traslazionale Università degli Studi di Milano Milan Italy Department of Radiology & Nuclear Medicine VU University Medical Center Amsterdam The Netherlands Department of Clinical Pharmacology & Pharmacy VU University Medical Center Amsterdam The Netherlands Université de Lorraine Vandoeuvre les Nancy France NancycloTEP Plateforme d’imagerie expérimentale Vandoeuvre les Nancy France CNRS UMR 7565 SRSMC Vandoeuvre les Nancy France CHU de Nancy-Brabois Vandoeuvre les Nancy France Department of Biomedical Imaging and Image-guided Therapy Division of Nuclear Medicine Medical Univers

Table of contents OP03 Selective extraction of medically-related radionuclides from proton-irradiated thorium targets V. Radchenko, J.W. Engle, C. Roy, J. Griswold, M.F. Nortier, E.R. Birnbaum, M. Brugh, S. Mirzadeh, K. D. John, M.E. Fassbender OP04 Comparison of [68Ga]FSC(succ-RGD)3 and [68Ga]NODAGA-RGD for PET imaging of alpha v beta 3 integrin expression Chuangyan Zhai, Gerben M. Franssen, Milos Petrik, Peter Laverman, Clemens Decristoforo OP05 A new NPY-Y1R targeting peptide for breast cancer PET imaging Ait-Mohand Samia, Dumulon-Perreault Veronique, Guerin Brigitte OP06 The influence of multivalency on CCK 2 receptor targeting D. Summer, A. Kroess, C. Rangger, H. Haas, P. Laverman, F. Gerben, E. von Guggenberg, *** OP07 SPECT Imaging of alpha v beta 3 Expression by [99mTc(N)PNP43]- Bifunctional Chimeric RGD Peptide not Cross-Reacting with alpha v beta 5 Cristina Bolzati, Nicola Salvarese, Fiorenzo Refosco, Laura Melendez-Alafort, Debora Carpanese, Antonio Rosato, Michele Saviano, Annarita Del Gatto, Daniela Comegna, Laura Zaccaro OP09 New dienophiles for the inverse-electron-demand Diels-Alder reaction and for pretargeted PET imaging Emilie Billaud, Muneer Ahamed, Frederik Cleeren, Elnaz Shahbazali, Tim Noel, Volker Hessel, Alfons Verbruggen and Guy Bormans OP10 New complexing agent for Al18F-labelling of heat-sensitive biomolecules: Synthesis and preclinical evaluation of Al18F-RESCA1-HAS Cleeren F, Lecina J, Koole M, Verbruggen A and Bormans G OP11 A novel versatile precursor efficient for F-18 radiolabelling via click-chemistry B. Lugatoa, S. Stucchia, E.A. Turollaa, L. Giulianoa, ***, P. Ferraboschib OP12 A general applicable method to quantify unidentified UV impurities in radiopharmaceuticals R.P. Klok, M.P.J. Mooijer, N.H. Hendrikse, A.D. Windhorst OP13 Development of [F-18]Fluoro-C-glycosides to radiolabel peptides Collet C., Petry N., Chretien F., Karcher G., Pellegrini-Moise N., Lamande-Langle S. OP14 A Microfluidic Approach for the 68

关键词： Positron Emission Tomography Single Photon Emission Compute Tomography Standard Uptake Value Positron Emission Tomography Imaging High Pressure Liquid Chromatography

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A framework for automatic detection of lumen-endothelium border in intracoronary OCT image sequences

A framework for automatic detection of lumen-endothelium bor...

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13th Mediterranean Conference on medical and Biological engineering and Computing 2013, MEDICON 2013

作者： Cheimariotis, G. Koutkias, V. Chouvarda, I. Toutouzas, K. Chatzizisis, Y.S. Giannopoulos, A. Riga, M. Antoniadis, A. Doulaverakis, C. Tsampoulatidis, I. Kompatsiaris, I. Stefanadis, C. Giannoglou, G. Maglaveras, N. Lab of Medical Informatics Medical School Aristotle University Thessaloniki Greece 1st Department of Cardiology Athens Medical School Hippokration Hospital Athens Greece Cardiovascular Engineering and Atherosclerosis Laboratory 1st Cardiology Department AHEPA University Hospital Medical School Aristotle University Thessaloniki Greece Information Technologies Institute Center for Research and Technology-Hellas Thessaloniki Greece

ISBN: (纸本)9783319008455

Intracoronary optical coherence tomography (OCT) is increasingly being used for real-time visualization of coronary arteries aiming to help in the identification of highrisk atherosclerotic plaques associated with geometrical and morphological features of the arterial wall. This paper presents a framework towards the automatic detection of the inner wall of the coronary artery (lumen-endothelium border) in intracoronary OCT image sequences by employing a multistep image processing method. The major focus of this work was to address difficult cases that are frequently met in intracoronary OCT, e.g. images with small/big branches, multiple branches, blood presence, calcifications, artifacts, etc. We present each step employed and the results obtained both in qualitative and quantitative terms. The proposed segmentation algorithm has been proven very efficient in the majority of the examined cases. © Springer International Publishing Switzerland 2014.

关键词： Optical tomography

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19th biennial IPEG Meeting

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Neuropsychiatric Electrophysiology 2016年第1期2卷 1-34页

作者： Igor Timofeev Leon Kenemans P. F. Fabene A. Ahnaou Sebastian Olbrich Robert Oostenveld Martijn Arns Nash Boutros Fernando Lopes da Silva Ole Jensen Sandra K. Loo Hans-Peter Landolt Jan Mathijs Schoffelen Alida A. Gouw Arjan Hillebrand Matteo Demuru Peterjan Ris Philip Scheltens Cornelis J. Stam Ida A. Nissen Ilse E. C. W. van Straaten Jaap C. Reijneveld Sonja Simpraga Ricardo Alvarez-Jimenez Huibert D. Mansvelder Joop M. A. van Gerven Geert Jan Groeneveld Simon-Shlomo Poil Klaus Linkenkaer-Hansen Michel J. A. M. van Putten Marleen C. Tjepkema-Cloostermans Jeannette Hofmeijer Claudio Babiloni Antonio Ivano Triggiani Roberta Lizio Susanna Cordone Antonio Brunetti Giacomo Tattoli Vitoantonio Bevilacqua Andrea Soricelli Raffaele Ferri Flavio Nobili Loreto Gesualdo José Carlos Millán-Calenti Ana Buján Rosanna Tortelli Valentina Cardinali Orietta Barulli Antonio Giannini Pantaleo Spagnolo Silvia Armenise Grazia Buenza Gaetano Scianatico Giancarlo Logroscino Giovanni B. Frisoni Claudio Del Percio Joerg F. Hipp Robert Comley Darren Bentley Michael Derks Pilar Garces Frederic Knoflach Sian Lennon-Chrimes Stephane Nave Jana Noldeke Nick Seneca Gerhard Trube Christoph Wandel Andrew WThomas Maria-Clemancia Hernandez Berrie Gerrits Madelon A. Vollebregt Roy P. C. Kessels Donna Palmer Evian Gordon Tieme W. P. Janssen Dirk J. Heslenfeld Rosa van Mourik Katleen Geladé Athanasios Maras Jaap Oosterlaan Daniel Brandeis Christian Sander Ulrich Hegerl Nash N. Boutros Alexandra Kirsten Anna-Lena Dohrmann Galina Surova T. A. Iseger J. L. Kenemans M. Arns Marcel A. Pawlowski Marek Adamczyk Thorsten Mikoteit Axel Steiger Martien J. Kas Karlijn I. van Aerde Clementina M. van Rijn Marijtje L. A. Jongsma Philip L. C. van den Broek Jan van Egmond C. Walsh L. Raeymaekers R. Biermans N. V. Manyakov C. Wintmolders A. Bottelbergs K. Van Kolen D. Moechars J. A. Kemp W. H. Drinkenburg Nicola Marzano Susanna Lopez Giuseppe Noce Cristina Bagnoli Paolo Maria Rossini Flavio Mariano Nobili David Bartres Faz Olivier Blin Pierre Payoux Regis Bordet Bernh Department of Psychiatry and Neuroscience Université Laval Québec Canada Centre de recherche de l’Institut universitaire en santé mentale de Québec (CRIUSMQ) Université Laval Québec Canada Experimental Psychology Helmholtz Institute Utrecht University Utrecht Netherlands Department Neuroscience Biomedicine and Movement School of Medicine University of Verona Verona Italy A Division of Janssen Pharmaceutica NV Department of Neuroscience Discovery Janssen Research & Development Beerse Belgium Department for Psychiatry Psychotherapy and Psychosomatic University of Zurich Zurich Switzerland Donders Institute for Brain Cognition and Behaviour Radboud University Nijmegen The Netherlands NatMEG Karolinska Institute Stockholm Sweden euroCare group Munich Germany Research Institute Brainclinics Nijmegen The Netherlands Department of Experimental Psychology Utrecht University Utrecht The Netherlands University of Missouri-Kansas City Kansas City USA Centre of Neuroscience Swammerdam Institute for Life Sciences University of Amsterdam Amsterdam The Netherlands School of Psychology University of Birmingham Birmingham UK Department of Psychiatry and Biobehavioral Sciences UCLA Los Angeles USA Institute of Pharmacology and Toxicology University of Zürich Zürich Switzerland Zürich Center for interdisciplinary Sleep Research University of Zürich Zürich Switzerland Donders Institute Radboud University Nijmegen The Netherlands Alzheimer Center and Department of Neurology Neuroscience Campus Amsterdam VU University Medical Center Amsterdam The Netherlands Department of Clinical Neurophysiology and MEG Center Neuroscience Campus Amsterdam VU University Medical Center Amsterdam The Netherlands Department of Clinical Neurophysiology and MEG Center VU University Medical Center Amsterdam The Netherlands Brain Tumor Center Amsterdam & Department of Neurology VU University Medical Center Amsterdam The Netherlands Department Integrative Neurophysiology CNCR Neuroscie

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Non-invasive knee osteoarthritis diagnosis via vibroarthrographic signal analysis

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Journal of information Hiding and Multimedia Signal Processing 2014年第3期5卷 497-507页

作者： Lin, Wei-Chun Lee, Tsair-Fwu Lin, Shu-Yuan Wu, Li-Fu Wang, Hung-Yu Chang, Liyun Wu, Jia-Ming Jiang, Jing-Chuan Tuan, Chiu-Ching Horng, Mong-Fong Shieh, Chin-Shiuh Chao, Pei-Ju Department of Institute of Photonics and Communications National Kaohsiung University of Applied Sciences Kaohsiung Taiwan Department of Orthopedic Kaohsiung Municipal Min-Sheng Hospital Taiwan Medical Physics and Informatics Laboratory Department of Electronics Engineering National Kaohsiung University of Applied Sciences Kaohsiung Taiwan Department of Plastic Surgery Kaohsiung Municipal Min-Sheng Hospital Taiwan Department of Electronics Engineering National Kaohsiung University of Applied Sciences Kaohsiung Taiwan Department of Medical Imaging and Radiological Sciences I-Shou University Kaohsiung Taiwan Department of Information Engineering I-Shou University Taiwan Department of Radiation Oncology E-Da Hospital Kaohsiung Taiwan Department of Electronics Engineering National Taipei University of Technology Taipei Taiwan Department of Orthopedic Kaohsiung Chang Gung Memorial Hospital Chang Gung University College of Medicine Kaohsiung Taiwan

Crepitus is a prominent sign during the knee joint undergoing a range of motion which can be detected to form the vibroarthrographic (VAG) signals. These signals can be used as useful indicators of osteoarthritis (OA) status for supplementing conventional X-ray imaging in the diagnosis of knee OA. In this study, a non-invasive knee OA diagnosis system was conducted via VAG signal *** system included a goniometer to provide an analog reference signal for positioning, an electronic stethoscope to detect knee VAG signals and an FPGA signal processing system as a system kernel. Power spectra of the signals provided by the Fourier transform were obtained and partition indices calculated. Discriminant functions were built with distribution parameters constructed from the partition indices. The processed VAG signals were compared with X-ray images in OA diagnosis to explore the differences between predicted and observed results. System model performance was evaluated using measures for discriminative ability, including the area under the receiver operating characteristic curve (AUC). The negative predictive value (NPV) was checked for the rate of correctly predicting the absence of OA. The positive predictive value (PPV) is the proportion of patients with OA who are correctly *** performance was validated using the receiver operating characteristic curve. The classification result illustrated a sensitivity of 89.52% and a specificity of 67.50%, with a total accuracy rate of 81.52%. The AUC values obtained were 0.68 (95% CI 0.61-0.74). The rates of correctly predicting the lack of OA were approximately 78.6% (NPV) and the proportions of patients with OA who are correctly diagnosed were approximately 82.8% (PPV), *** analysis in OA diagnosis provides an economic alternative to X-ray examination in osteoarthritic patients.

关键词： Grading

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Linear Matrix Inequality-based Robust controller design for Type-1 Diabetes Model

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IFAC Proceedings Volumes 2014年第3期47卷 9247-9252页

作者： Péter Szalay György Eigner Levente A. Kovács Department of Control Engineering and Information Technology Budapest University of Technology and Economics Budapest Hungary (Tel: +361 463 4027 Austrian Center for Medical Innovation and Technology (ACMIT) Viktor Kaplan-Straße 2 2700 Wiener Neustadt— Austria Institute of Information Systems John von Neumann Faculty of Informatics Obuda University Budapest Hungary (Tel: +361 666 5585

This paper investigates the capabilities of a sophisticated robust nonlinear controller designed directly for a widely known and used high-order nonlinear type 1 diabetes (T1DM) model to lessen the dependency from patient compliance and to answer practical requirements such as avoiding hypoglycaemia. The resulting controller can perform adequately in nominal conditions, but expected to keep this performance even in extreme situations, e.g. high carbohydrate intake, rejecting hypoglycaemic episodes.

关键词： Generalized linear systems Biomedical control Nonlinear control Robustness

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Sequence data and association statistics from 12,940 type 2 diabetes cases and controls

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Scientific data 2017年第1期4卷 170179页

作者： Jason Flannick Christian Fuchsberger Anubha Mahajan Tanya M Teslovich Vineeta Agarwala Kyle J Gaulton Lizz Caulkins Ryan Koesterer Clement Ma Loukas Moutsianas Davis J McCarthy Manuel A Rivas John R B Perry Xueling Sim Thomas W Blackwell Neil R Robertson N William Rayner Pablo Cingolani Adam E Locke Juan Fernandez Tajes Heather M Highland Josee Dupuis Peter S Chines Cecilia M Lindgren Christopher Hartl Anne U Jackson Han Chen Jeroen R Huyghe Martijn van de Bunt Richard D Pearson Ashish Kumar Martina Müller-Nurasyid Niels Grarup Heather M Stringham Eric R Gamazon Jaehoon Lee Yuhui Chen Robert A Scott Jennifer E Below Peng Chen Jinyan Huang Min Jin Go Michael L Stitzel Dorota Pasko Stephen C J Parker Tibor V Varga Todd Green Nicola L Beer Aaron G Day-Williams Teresa Ferreira Tasha Fingerlin Momoko Horikoshi Cheng Hu Iksoo Huh Mohammad Kamran Ikram Bong-Jo Kim Yongkang Kim Young Jin Kim Min-Seok Kwon Juyoung Lee Selyeong Lee Keng-Han Lin Taylor J Maxwell Yoshihiko Nagai Xu Wang Ryan P Welch Joon Yoon Weihua Zhang Nir Barzilai Benjamin F Voight Bok-Ghee Han Christopher P Jenkinson Teemu Kuulasmaa Johanna Kuusisto Alisa Manning Maggie C Y Ng Nicholette D Palmer Beverley Balkau Alena Stančáková Hanna E Abboud Heiner Boeing Vilmantas Giedraitis Dorairaj Prabhakaran Omri Gottesman James Scott Jason Carey Phoenix Kwan George Grant Joshua D Smith Benjamin M Neale Shaun Purcell Adam S Butterworth Joanna M M Howson Heung Man Lee Yingchang Lu Soo-Heon Kwak Wei Zhao John Danesh Vincent K L Lam Kyong Soo Park Danish Saleheen Wing Yee So Claudia H T Tam Uzma Afzal David Aguilar Rector Arya Tin Aung Edmund Chan Carmen Navarro Ching-Yu Cheng Domenico Palli Adolfo Correa Joanne E Curran Dennis Rybin Vidya S Farook Sharon P Fowler Barry I Freedman Michael Griswold Daniel Esten Hale Pamela J Hicks Chiea-Chuen Khor Satish Kumar Benjamin Lehne Dorothée Thuillier Wei Yen Lim Jianjun Liu Marie Loh Solomon K Musani Sobha Puppala William R Scott Loïc Yengo Sian-Tsung Tan Herman A Taylor Farook Thameem Gregory Wilson Tien Yin Wong Pål Rasmu Department of Molecular Biology Massachusetts General Hospital Boston Massachusetts USA. Program in Medical and Population Genetics Broad Institute Cambridge Massachusetts USA. Department of Biostatistics and Center for Statistical Genetics University of Michigan Ann Arbor Michigan USA. Wellcome Trust Centre for Human Genetics Nuffield Department of Medicine University of Oxford Oxford UK. Harvard-MIT Division of Health Sciences and Technology Massachusetts Institute of Technology Cambridge Massachusetts USA. Department of Statistics University of Oxford Oxford UK. Genetics of Complex Traits University of Exeter Medical School University of Exeter Exeter UK. MRC Epidemiology Unit Institute of Metabolic Science University of Cambridge Cambridge UK. Department of Twin Research and Genetic Epidemiology King's College London London UK. Oxford Centre for Diabetes Endocrinology and Metabolism Radcliffe Department of Medicine University of Oxford Oxford UK. Department of Human Genetics Wellcome Trust Sanger Institute Hinxton Cambridgeshire UK. School of Computer Science McGill University Montreal Quebec Canada. McGill University and Génome Québec Innovation Centre Montreal Quebec Canada. Human Genetics Center The University of Texas Graduate School of Biomedical Sciences at Houston The University of Texas Health Science Center at Houston Houston Texas USA. Department of Biostatistics Boston University School of Public Health Boston Massachusetts USA. National Heart Lung and Blood Institute's Framingham Heart Study Framingham Massachusetts USA. Medical Genomics and Metabolic Genetics Branch National Human Genome Research Institute National Institutes of Health Bethesda Maryland USA. Department of Biostatistics Harvard School of Public Health Boston Massachusetts USA. Chronic Disease Epidemiology Swiss Tropical and Public Health Institute University of Basel Basel Switzerland. Institute of Genetic Epidemiology Helmholtz Zentrum München German R

To investigate the genetic basis of type 2 diabetes (T2D) to high resolution, the GoT2D and T2D-GENES consortia catalogued variation from whole-genome sequencing of 2,657 European individuals and exome sequencing of 12,940 individuals of multiple ancestries. Over 27M SNPs, indels, and structural variants were identified, including 99% of low-frequency (minor allele frequency [MAF] 0.1-5%) non-coding variants in the whole-genome sequenced individuals and 99.7% of low-frequency coding variants in the whole-exome sequenced individuals. Each variant was tested for association with T2D in the sequenced individuals, and, to increase power, most were tested in larger numbers of individuals (>80% of low-frequency coding variants in ~82 K Europeans via the exome chip, and ~90% of low-frequency non-coding variants in ~44 K Europeans via genotype imputation). The variants, genotypes, and association statistics from these analyses provide the largest reference to date of human genetic information relevant to T2D, for use in activities such as T2D-focused genotype imputation, functional characterization of variants or genes, and other novel analyses to detect associations between sequence variation and T2D.

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ESICM LIVES 2016: part two

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Intensive Care Medicine Experimental 2016年第1期4卷 205-404页

作者： S. Sivakumar F. S. Taccone K. A. Desai C. Lazaridis M. Skarzynski M. Sekhon W. Henderson D. Griesdale L. Chapple A. Deane L. Williams R. Strickland K. Lange D. Heyland M. Chapman M. J. Rowland P. Garry J. Westbrook R. Corkill C. A. Antoniades K. T. Pattinson G. Fatania A. J. Strong R. B. Myers C. M. Jermaine C. S. Robertson C. G. Rusin J. Hofmeijer L. Sondag M. C. Tjepkema-Cloostermans A. Beishuizen F. H. Bosch M. J. A. M. van Putten L. Carteron C. Patet D. Solari M. Oddo M. A. Ali C. Dias R. Almeida A. Vaz-Ferreira J. Silva E. Monteiro A. Cerejo A. P. Rocha A. A. Elsayed A. M. Abougabal B. N. Beshey K. M. Alzahaby S. Pozzebon A. Blandino Ortiz S. Cristallini O. Lheureux A. Brasseur J. L. Vincent J. Creteur M. Hravnak K. Yousef Y. Chang E. Crago R. M. Friedlander S. A. Abdelmonem S. A. Tahon T. A. Helmy H. S. Meligy F. Puig I. Dunn-Siegrist J. Pugin S. Gupta D. Govil S. Srinivasan S. J. Patel J. K. N A. Gupta D. S. Tomar M. Shafi R. Harne D. P. Arora N. Talwar S. Mazumdar E. E. Papakrivou D. Makris E. Manoulakas B. Tsolaki B. Karadodas E. Zakynthinos I. Palacios Garcia A. Diaz Martin V. Sanchez Encinares M. Pachón Ibañez J. Garnacho Montero G. Labrador T. Cebrero Cangueiro V. Poulose J. Koh J. W. Kam H. Yeter A. Kara O. Aktepe A. Topeli I. Tsolakoglou G. Intas P. Stergiannis A. A. Kolaros E. Chalari E. Athanasiadou A. Martika G. Fildisis V. Faivre C. Mengelle B. Favier D. Payen A. Poppe M. S. Winkler E. Mudersbach J. Schreiber M. L. Wruck E. Schwedhelm S. Kluge C. Zöllner T. Tavladaki A. M. Spanaki H. Dimitriou E. Kondili C. Choulaki E. Meleti D. Kafetzopoulos D. Georgopoulos G. Briassoulis A. García-de la Torre M. V. de la Torre-Prados T. Tsvetanova-Spasova P. Nuevo-Ortega C. Rueda-Molina A. Fernández-Porcel E. Camara-Sola L. Salido-Díaz A. García-Alcántara D. E. Meleti B. Suberviola J. Riera L. Rellan M. Sanchez J. C. Robles E. Lopez R. Vicente E. Miñambres M. Santibañez M. Le Guen J. Moore N. Mason M. Windpassinger O. Plattner E. Mascha D. I. Sessler Outcomes Research U. Melia J. Fontanet J. P. van den Berg M. Baylor College of Medicine Neurology/Neurocritical Care Houston USA Erasmus Hospital Intensive Care Medicine Brussels Belgium Centre Hospitalier Régional Orléans Réaimation Médicale Orléans France University of British Columbia Vancouver Canada University of Adelaide Discipline of Acute Care Medicine Adelaide Australia Royal Adelaide Hospital Intensive Care Adelaide Australia Griffith University Menzies Health Institute of Queensland Gold Coast Australia University of Adelaide Discipline of Medicine Adelaide Australia Kingston General Hospital Clinical Evaluation Research Unit Kingston Canada University of Oxford Nuffield Department of Clinical Neurosciences Oxford UK Oxford University Hospitals NHS Foundation Trust Neurosciences Intensive Care Unit Oxford UK King’s College Hospital Department of Neurosurgery London UK King’ College London Institute of Psychiatry Psychology and Neuroscience Department of Clinical Neuroscience London UK Rice University Computer Science Houston USA Baylor College of Medicine Neurosurgery Houston USA Baylor College of Medicine Pediatric Cardiology Houston USA University of Twente Clinical Neurophysiology Enschede Netherlands Rijnstate Hospital Neurology Arnhem Netherlands Medical Spectrum Twente Clinical Neurophysiology Enschede Netherlands Medical Spectrum Twente Intensive Care Enschede Netherlands Rijnstate Hospital Intensive Care Arnhem Netherlands CHUV Department of Intensive Care Medicine Neuroscience Critical Care Research Group Lausanne Switzerland Aga Khan University Hospital Anaesthesiology Karachi Pakistan Centro Hospitalar São João Intensive Care Porto Portugal Faculty of Medicine University of Porto Medicine Porto Portugal Faculdade de Ciências Universidade do Porto Departamento de Matemática Porto Portugal Centro de Matemática Universidade do Porto Porto Portugal The Biomedical Research Networking Center in Bioengineering Biomaterials and Nanomedicine Zaragoza Spain Centro Hospitalar

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Highlights from the 11th ISCB Student Council Symposium 2015. Dublin, Ireland. 10 July 2015

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BMC bioinformatics 2016年第3期17 Suppl 3卷 95页

作者： Katie Wilkins Mehedi Hassan Margherita Francescatto Jakob Jespersen R. Gonzalo Parra Bart Cuypers Dan DeBlasio Alexander Junge Anupama Jigisha Farzana Rahman Griet Laenen Sander Willems Lieven Thorrez Yves Moreau Nagarajan Raju Sonia Pankaj Chothani C. Ramakrishnan Masakazu Sekijima M. Michael Gromiha Paddy J Slator Nigel J Burroughs Przemysław Szałaj Zhonghui Tang Paul Michalski Oskar Luo Xingwang Li Yijun Ruan Dariusz Plewczynski Giulia Fiscon Emanuel Weitschek Massimo Ciccozzi Paola Bertolazzi Giovanni Felici Pieter Meysman Manu Vanaerschot Maya Berg Hideo Imamura Jean-Claude Dujardin Kris Laukens Westa Domanova James R. Krycer Rima Chaudhuri Pengyi Yang Fatemeh Vafaee Daniel J. Fazakerley Sean J. Humphrey David E. James Zdenka Kuncic Plant Pathology and Plant-Microbe Biology Section School of Integrative Plant Science Cornell University Ithaca USA Graduate Field of Computational Biology Cornell University Ithaca USA School of Computing & Mathematics University of South Wales Cardiff UK Department of Genome Biology for Neurodegenerative Diseases German Center for Neurodegenerative Diseases (DZNE) within the Helmholtz Association ᅟ Germany Department of Surgery Massachusetts General Hospital The Broad Institute of MIT and Harvard Boston USA Department of Systems Biology Technical University of Denmark Kemitorvet Denmark Protein Physiology Lab Facultad de Ciencias Exactas y Naturales Universidad de Buenos Aires Buenos Aires Argentina Molecular Parasitology Unit (MPU) Institute of Tropical Medicine Antwerp Belgium Advanced Database Research and Modeling (ADReM) research group University of Antwerp Antwerpen Belgium Department of Computer Science University of Arizona Tucson USA Department of Veterinary Clinical and Animal Sciences Center for non-coding RNA in Technology and Health University of Copenhagen Copenhagen Denmark University College Dublin Dublin Ireland Department of Electrical Engineering (ESAT) STADIUS Center for Dynamical Systems Signal Processing and Data Analytics KU Leuven Leuven Belgium Minds Medical IT Department Leuven Belgium Scientific Institute of Public Health (WIV-ISP) Platform of Biotechnology and Molecular Biology (PBB) Brussels Belgium Department of Development and Regeneration @ Kulak KU Leuven Kortrijk Belgium Department of Biotechnology Bhupat and Jyoti Metha School of Biosciences Indian Institute of Technology Madras Chennai India Philips Research North America Briarcliff Manor USA Global Scientific Information and Computing Center (GSIC) Tokyo Institute of Technology Tokyo Japan Systems Biology Centre University of Warwick Senate House Coventry UK Systems Biology Doctoral Training Centre University of Warwick Senate House Coventry UK Center for B

A1 Highlights from the eleventh ISCB Student Council Symposium 2015 Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman O1 Prioritizing a drug’s targets using both gene expression and structural similarity Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau O2 Organism specific protein-RNA recognition: A computational analysis of protein-RNA complex structures from different organisms Nagarajan Raju, Sonia Pankaj Chothani, C. Ramakrishnan, Masakazu Sekijima; M. Michael Gromiha O3 Detection of Heterogeneity in Single Particle Tracking Trajectories Paddy J Slator, Nigel J Burroughs O4 3D-NOME: 3D NucleOme Multiscale Engine for data-driven modeling of three-dimensional genome architecture Przemysław Szałaj, Zhonghui Tang, Paul Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski O5 A novel feature selection method to extract multiple adjacent solutions for viral genomic sequences classification Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici O6 A Systems Biology Compendium for Leishmania donovani Bart Cuypers, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens O7 Unravelling signal coordination from large scale phosphorylation kinetic data Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic

关键词： Visceral Leishmaniasis Feature Selection Method Frequent Itemset Mining Leishmania Donovani Student Council

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Using total-variation regularization for deformable registration of the utero fetal MR images

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Journal of Bionanoscience 2013年第1期7卷 5-9页

作者： Qi, En Wang, Lili Xie, Yaoqin Zhou, Shoujun Zhang, Huailing Hu, Jiani Key Laboratory for Health Informatics Shenzhen Institutes of Advanced Technology University of Chinese Academy of Sciences Shenzhen 518055 China School of Information Engineering Guangdong Medical College Dongguan 523808 China Department of Radiology Wayne State University Detroit MI 48331 United States

Magnetic resonance imaging (MRI) has become an important tool in the assessment of fetal anomalies and the central nervous system. Accurate modeling of fetal motions remains illusive because of the lack of an effective mechanism to deal with the discontinuous movements of the involved anatomic structures. In this work, we propose an efficient deformable registration algorithm to deal with the fetal motion. Instead of directly applying the least square optimization, we include a totalvariation regularization to account for the motion discontinuity close to the contact surface between fetal and uterus wall. The term of total variation calculates the sum of absolute values of the derivatives, and the penalties drive the derivatives toward zeros and force the optimized displacement vector close to be piece-wise continuity. The proposed approach is evaluated using a series of fetal cases. A comparison with the Levenberg-Marquardt least square optimization showed that the registration accuracy was markedly improved. The deformable approach using total-variation provides a natural and logical solution to model the fetal motions in uterus and greatly improves the accuracy and robustness of deformable registration. Copyright © 2013 American Scientific Publishers.

关键词： Magnetic resonance imaging

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Human genome meeting 2016 : Houston, TX, USA. 28 February - 2 March 2016

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Human genomics 2016年第1期10 Suppl 1卷 12页

作者： A. K. Srivastava Y. Wang R. Huang C. Skinner T. Thompson L. Pollard T. Wood F. Luo R. Stevenson R. Polimanti J. Gelernter X. Lin I. Y. Lim Y. Wu A. L. Teh L. Chen I. M. Aris S. E. Soh M. T. Tint J. L. MacIsaac F. Yap K. Kwek S. M. Saw M. S. Kobor M. J. Meaney K. M. Godfrey Y. S. Chong J. D. Holbrook Y. S. Lee P. D. Gluckman N. Karnani A. Kapoor D. Lee A. Chakravarti C. Maercker F. Graf M. Boutros G. Stamoulis F. Santoni P. Makrythanasis A. Letourneau M. Guipponi N. Panousis M. Garieri P. Ribaux E. Falconnet C. Borel S. E. Antonarakis S. Kumar J. Curran J. Blangero S. Chatterjee J. Akiyama D. Auer C. Berrios L. Pennacchio T. R. Donti G. Cappuccio M. Miller P. Atwal A. Kennedy A. Cardon C. Bacino L. Emrick J. Hertecant F. Baumer B. Porter M. Bainbridge P. Bonnen B. Graham R. Sutton Q. Sun S. Elsea Z. Hu P. Wang Y. Zhu J. Zhao M. Xiong David A. Bennett A. Hidalgo-Miranda S. Romero-Cordoba S. Rodriguez-Cuevas R. Rebollar-Vega E. Tagliabue M. Iorio E. D’Ippolito S. Baroni B. Kaczkowski Y. Tanaka H. Kawaji A. Sandelin R. Andersson M. Itoh T. Lassmann Y. Hayashizaki P. Carninci A. R. R. Forrest C. A. Semple E. A. Rosenthal B. Shirts L. Amendola C. Gallego M. Horike-Pyne A. Burt P. Robertson P. Beyers C. Nefcy D. Veenstra F. Hisama R. Bennett M. Dorschner D. Nickerson J. Smith K. Patterson D. Crosslin R. Nassir N. Zubair T. Harrison U. Peters G. Jarvik F. Menghi K. Inaki X. Woo P. Kumar K. Grzeda A. Malhotra H. Kim D. Ucar P. Shreckengast K. Karuturi J. Keck J. Chuang E. T. Liu B. Ji A. Tyler G. Ananda G. Carter H. Nikbakht M. Montagne M. Zeinieh A. Harutyunyan M. Mcconechy N. Jabado P. Lavigne J. Majewski J. B. Goldstein M. Overman G. Varadhachary R. Shroff R. Wolff M. Javle A. Futreal D. Fogelman L. Bravo W. Fajardo H. Gomez C. Castaneda C. Rolfo J. A. Pinto K. C. Akdemir L. Chin S. Patterson C. Statz S. Mockus S. N. Nikolaev X. I. Bonilla L. Parmentier B. King F. Bezrukov G. Kaya V. Zoete V. Seplyarskiy H. Sharpe T. McKee K. Popadin N. Basset-Seguin R. Ben Chaabene M. Andrianova C. Verdan K. Grosdemange O. Sumara M. E JCSRI Greenwood Genetic Center Greenwood USA School of Computing Clemson University Clemson USA Biochemical Genetics Laboratory Greenwood Genetic Center Greenwood USA Department Psychiatry Yale Sch Med and VA CT Healthcare Center West Haven USA Department Genetics Yale Sch Med and VA CT Healthcare Center West Haven USA Department Neurobiology Yale Sch Med and VA CT Healthcare Center West Haven USA Singapore Institute for Clinical Sciences Singapore Singapore National University of Singapore Singapore Singapore University of British Columbia Vancouver Canada KK Women’s and Children’s Hospital Singapore Singapore University of Southampton and University Hospital Southampton NHS Foundation Trust Southampton UK University of Auckland Auckland New Zealand McKusick-Nathans Institute of Genetic Medicine Johns Hopkins University School of Medicine Baltimore USA Esslingen University of Applied Sciences Esslingen Germany German Cancer Research Center Heidelberg Germany Department of Genetic Medicine and Development University of Geneva Medical School Geneva Switzerland Geneva University Hospitals-HUG Service of Genetic Medicine Geneva Switzerland GE3 Institute of Genetics and Genomics of Geneva University of Geneva Medical School Geneva Switzerland South Texas Diabetes and Obesity Institute School of Medicine University of Texas Rio-Grande Valley Edinburg USA South Texas Diabetes and Obesity Institute School of Medicine University of Texas Rio-Grande Valley Brownsville USA Institute of Genetic Medicine Johns Hopkins University Baltimore USA Genomics Division Lawrence Berkeley National Laboratory Berkeley USA Molecular and Human Genetics Baylor College of Medicine Houston USA Department of Translational Medical Sciences Federico II University Naples Italy Metabolon Inc Durham USA Section of Pediatric Neurology and Neuroscience Baylor College of Medicine Houston USA Tawam Hospital Abu Dhabi United Arab Emirates Stanford Medical School Stanford USA Sch

O1 The metabolomics approach to autism: identification of biomarkers for early detection of autism spectrum disorder A. K. Srivastava, Y. Wang, R. Huang, C. Skinner, T. Thompson, L. Pollard, T. Wood, F. Luo, R. Stevenson O2 Phenome-wide association study for smoking- and drinking-associated genes in 26,394 American women with African, Asian, European, and Hispanic descents R. Polimanti, J. Gelernter O3 Effects of prenatal environment, genotype and DNA methylation on birth weight and subsequent postnatal outcomes: findings from GUSTO, an Asian birth cohort X. Lin, I. Y. Lim, Y. Wu, A. L. Teh, L. Chen, I. M. Aris, S. E. Soh, M. T. Tint, J. L. MacIsaac, F. Yap, K. Kwek, S. M. Saw, M. S. Kobor, M. J. Meaney, K. M. Godfrey, Y. S. Chong, J. D. Holbrook, Y. S. Lee, P. D. Gluckman, N. Karnani, GUSTO study group O4 High-throughput identification of specific qt interval modulating enhancers at the SCN5A locus A. Kapoor, D. Lee, A. Chakravarti O5 Identification of extracellular matrix components inducing cancer cell migration in the supernatant of cultivated mesenchymal stem cells C. Maercker, F. Graf, M. Boutros O6 Single cell allele specific expression (ASE) IN T21 and common trisomies: a novel approach to understand DOWN syndrome and other aneuploidies G. Stamoulis, F. Santoni, P. Makrythanasis, A. Letourneau, M. Guipponi, N. Panousis, M. Garieri, P. Ribaux, E. Falconnet, C. Borel, S. E. Antonarakis O7 Role of microRNA in LCL to IPSC reprogramming S. Kumar, J. Curran, J. Blangero O8 Multiple enhancer variants disrupt gene regulatory network in Hirschsprung disease S. Chatterjee, A. Kapoor, J. Akiyama, D. Auer, C. Berrios, L. Pennacchio, A. Chakravarti O9 Metabolomic profiling for the diagnosis of neurometabolic disorders T. R. Donti, G. Cappuccio, M. Miller, P. Atwal, A. Kennedy, A. Cardon, C. Bacino, L. Emrick, J. Hertecant, F. Baumer, B. Porter, M. Bainbridge, P. Bonnen, B. Graham, R. Sutton, Q. Sun, S. Elsea O10 A novel causal methylation network approach to Alzheimer’s

关键词： Pulmonary Arterial Hypertension Oral Squamous Cell Carcinoma Deep Neural Network Autosomal Recessive Polycystic Kidney Disease Whole Genome Bisulfite Sequencing

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