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Computational Optical Sensing and Imaging, COSI 2020 - Part of Imaging and Applied Optics Congress 2020

作者： Kuo, Grace Monakhova, Kristina Yanny, Kyrollos Ng, Ren Waller, Laura Department of Electrical Engineering and Computer Sciences University of California Berkeley BerkeleyCA94720 United States UCB/UCSF Joint Graduate Program in Bioengineering University of California Berkeley BerkeleyCA94720 United States

We propose a method based on blind deconvolution to calibrate the spatially-varying point spread functions of a coded-aperture microscope system. From easy-to-acquire measurements of unstructured fluorescent beads, we... 详细信息

ISBN: (纸本)9781557528209

关键词： Optical transfer function

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Implantable Biosensor for Continuous Serotonin Detection in Freely Moving Crayfish

Implantable Biosensor for Continuous Serotonin Detection in ...

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International Conference on Solid State Sensors and Actuators (TRANSDUCERS)

作者： Jinjing Han Tawen Ho Justin M. Stine Michael A. Straker Jens Herberholz Reza Ghodssi Department of Electrical and Computer Engineering University of Maryland College Park MD USA Institute for System Research University of Maryland College Park MD USA Robert E. Fischell Institute for Biomedical Devices University of Maryland College Park MD USA Department of Psychology University of Maryland College Park MD USA Program in Neuroscience and Cognitive Science University of Maryland College Park MD USA Fischell Department of Bioengineering University of Maryland College Park MD USA

This work presents, for the first time, an implantable biosensor for continuous in vivo serotonin (5-HT) monitoring in freely moving crayfish. 5-HT is an important neurotransmitter that regulates animal behaviors. Conventional methods for detecting 5-HT do not provide real-time information. Our approach facilitates continuous electrochemical monitoring of 5-HT levels without impeding animal natural behavior. The sensing system shows a linear range of 0.4 - 1.2 μΜ with a sensitivity of 0.07 μΑ/μΜ for 5-HT detection. With a 3D-printed package, the sensor can be easily attached to crayfish dorsal carapace allowing electrodes implantation into crayfish heart to monitor neurohormonal dynamics of 5-HT. The implantable biosensor system displayed a significant increase in oxidation currents after 5-HT injections. The device successfully demonstrates the application for in vivo detection of 5-HT in the hemolymph (i.e., blood) of freely behaving crayfish underwater.

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Time-domain methods for quantifying dynamic cerebral blood flow autoregulation: Review and recommendations. A white paper from the Cerebrovascular Research Network (CARNet)

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Journal of Cerebral Blood Flow and Metabolism 2024年第9期44卷 1480-1514页

作者： Kostoglou, Kyriaki Bello-Robles, Felipe Brassard, Patrice Chacon, Max Claassen, Jurgen AHR Czosnyka, Marek Elting, Jan-Willem Hu, Kun Labrecque, Lawrence Liu, Jia Marmarelis, Vasilis Z Payne, Stephen J Shin, Dae Cheol Simpson, David Smirl, Jonathan Panerai, Ronney B Mitsis, Georgios D Department of Electrical and Computer Engineering McGill University Montreal QC Canada Institute of Neural Engineering Graz University of Technology Graz Austria Departamento de Ingeniería Informática Universidad de Santiago de Chile Santiago Chile Department of Kinesiology Faculty of Medicine Université Laval QC Canada Research Center of the Institut universitaire de cardiologie et de pneumologie de Québec Quebec QC Canada Department of Geriatrics Radboud University Medical Center Research Institute for Medical Innovation and Donders Institute Nijmegen Netherlands Cerebral Haemodynamics in Ageing and Stroke Medicine (CHiASM) Department of Cardiovascular Sciences University of Leicester Leicester United Kingdom Department of Clinical Neurosciences Neurosurgery Department University of Cambridge Cambridge United Kingdom Department of Neurology and Clinical Neurophysiology University Medical Center Groningen Groningen Netherlands Medical Biodynamics Program Division of Sleep and Circadian Disorders Brigham and Women's Hospital Harvard Medical School Boston MA United States Division of Sleep Medicine Harvard Medical School Boston MA United States Laboratory for Engineering and Scientific Computing Institute of Advanced Computing and Digital Engineering Shenzhen Institute of Advanced Technology Chinese Academy of Sciences Guangdong Shenzhen China Department Biomedical Engineering Viterbi School of Engineering University of Southern California Los Angeles CA United States Institute of Applied Mechanics National Taiwan University Taipei Taiwan Institute of Sound and Vibration Research University of Southampton Southampton United Kingdom Cerebrovascular Concussion Laboratory Faculty of Kinesiology University of Calgary Calgary AB Canada Sport Injury Prevention Research Centre Faculty of Kinesiology University of Calgary Calgary AB Canada Hotchkiss Brain Institute University of Calgary Calgary AB Canada NIHR Leicester Biomedical Research Centre Bri

Cerebral Autoregulation (CA) is an important physiological mechanism stabilizing cerebral blood flow (CBF) in response to changes in cerebral perfusion pressure (CPP). By maintaining an adequate, relatively constant supply of blood flow, CA plays a critical role in brain function. Quantifying CA under different physiological and pathological states is crucial for understanding its implications. This knowledge may serve as a foundation for informed clinical decision-making, particularly in cases where CA may become impaired. The quantification of CA functionality typically involves constructing models that capture the relationship between CPP (or arterial blood pressure) and experimental measures of CBF. Besides describing normal CA function, these models provide a means to detect possible deviations from the latter. In this context, a recent white paper from the Cerebrovascular Research Network focused on Transfer Function Analysis (TFA), which obtains frequency domain estimates of dynamic CA. In the present paper, we consider the use of time-domain techniques as an alternative approach. Due to their increased flexibility, time-domain methods enable the mitigation of measurement/physiological noise and the incorporation of nonlinearities and time variations in CA dynamics. Here, we provide practical recommendations and guidelines to support researchers and clinicians in effectively utilizing these techniques to study CA. © The Author(s) 2024.

关键词： CARNet cerebral autoregulation cerebral blood flow time-domain methods white paper

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Bio-FlatScope: A flat, lensless microscope for fluorescence imaging

Bio-FlatScope: A flat, lensless microscope for fluorescence ...

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Optics and the Brain, BRAIN 2021 - Part of Biophotonics Congress: Optics in the Life Sciences 2021

作者： Wu, Jimin Yan, Dong Boominathan, Vivek Adams, Jesse K. Veeraraghavan, Ashok Robinson, Jacob T. Department of Bioengineering Rice University 6100 Main Street HoustonTX77005 United States Applied Physics Program Rice University 6100 Main Street HoustonTX77005 United States Department of Electrical and Computer Engineering Rice University 6100 Main Street HoustonTX77005 United States Department of Neuroscience Baylor College of Medicine One Baylor Plaza HoustonTX77030 United States Department of Computer Science Rice University 6100 Main Street HoustonTX77005 United States

We developed a lensless microscope with small, inexpensive form factor, large field-of-view (FOV) and cellular resolution for fluorescence imaging. Proof-of-principle measurements with "Bio-FlatScope" are pr... 详细信息

ISBN: (纸本)9781557528209

关键词： Fluorescence imaging

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Optimizing Marker Design to Improve Precision of Optical Camera-Based Rigid-Body Motion Tracking and Correction in Medical Imaging

Optimizing Marker Design to Improve Precision of Optical Cam...

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IEEE Symposium on Nuclear Science (NSS/MIC)

作者： Jonathan Fisher Chris C. Kim Andrew Groll Craig S. Levin Department of Electrical Engineering Stanford University California United States Department of Computer Science Stanford University California United States Department of Radiology and the Molecular Imaging Program Stanford University California United States Department of Radiology and by Courtesy Physics Electrical Engineering Bioengineering at Stanford University California United States

ISBN: (数字)9781665421133

ISBN: (纸本)9781665421140

In this work we evaluated the performance of a camera-based rigid body motion correction solution using a 2D checkerboard marker and a 3D encoded marker. The context of the results presented is in PET/MR imaging, but in principle this motion compensation method could be used in any type of medical imaging modality. A high precision, computer-controlled motion stage with four degrees of freedom was used to control the marker positions and orientations (a.k.a. ‘poses’). Still images of the markers taken in different poses mimicking a patient moving her/his head from side to side, were used to assess performance of this method. Comparing the known stage motion to the estimated motion, our results indicate that the 2D marker achieves better angular accuracy while the 3D marker’s translational (linear) accuracy is superior. For all axes, the angular error was less than 0.96, 0.35 [deg], and the translational error was less than 2.24, 4.76 [mm] for the 3D and 2D markers, respectively.

关键词： Three-dimensional displays Head Biomedical optical imaging Tracking Optical design Optical imaging Motion compensation

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A micromirror array with annular partitioning for high-speed random-access axial focusing

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Light(Science & Applications) 2020年第1期9卷 241-255页

作者： Nathan Tessema Ersumo Cem Yalcin Nick Antipa Nicolas Pegard Laura Waller Daniel Lopez Rikky Muller The University of California Berkeley and University of CaliforniaSan Francisco Graduate Program in BioengineeringBerkeleyCA 94720USA Department of Electrical Engineering&Computer Sciences University of CaliforniaBerkeleyCA 94720USA Department of Applied Physical Sciences University of North Carolina at Chapel HillChapel HillNC 27514USA Chan Zuckerberg Biohub San FranciscoCA 94158USA Physical Measurement Laboratory National Institute of Standards and TechnologyGaithersburgMD 20899USA

Dynamic axial focusing functionality has recently experienced widespread incorporation in microscopy,augmented/virtual reality(AR/VR),adaptive optics and material ***,the limitations of existing varifocal tools continue to beset the performance capabilities and operating overhead of the optical systems that mobilize such *** varifocal tools that are the least burdensome to operate(*** crystal,elastomeric or optofluidic lenses)suffer from low(≈100 Hz)refresh ***,the fastest devices sacrifice either critical capabilities such as their dwelling capacity(*** gradient lenses or monolithic micromechanical mirrors)or low operating overhead(*** mirrors).Here,we present a general-purpose random-access axial focusing device that bridges these previously conflicting features of high speed,dwelling capacity and lightweight drive by employing lowrigidity micromirrors that exploit the robustness of defocusing phase ***,the device consists of an 8.2mm diameter array of piston-motion and 48-μm-pitch micromirror pixels that provide 2πphase shifting for wavelengths shorter than 1100 nm with 10-90% settling in 64.8μs(i.e.,15.44 kHz refresh rate).The pixels are electrically partitioned into 32 rings for a driving scheme that enables phase-wrapped operation with circular symmetry and requires<30 V per *** experiments demonstrated the array’s wide focusing range with a measured ability to target 29 distinct resolvable depth ***,the features of the proposed array offer the potential for compact,straightforward methods of tackling bottlenecked applications,including high-throughput single-cell targeting in neurobiology and the delivery of dense 3D visual information in AR/VR.

关键词： mirror axial random

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Electrochemical measurement of serotonin by Au-CNT electrodes fabricated on microporous cell culture membranes

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Microsystems & Nanoengineering 2020年第1期6卷 494-506页

作者： Ashley A.Chapin Pradeep R.Rajasekaran David N.Quan Liangbing Hu Jens Herberholz William E.Bentley Reza Ghodssi Fischell Department of Bioengineering College ParkMD 20742USA Institute for Systems Research College ParkMD 20740USA Department of Materials Science and Engineering College ParkMD 20740USA Department of Psychology and Neuroscience and Cognitive Science Program College ParkMD 20740USA Institute for Bioscience and Biotechnology Research RockvilleMD 20850USA Robert E.Fischell Institute for Biomedical Devices RockvilleMD 20850USA Department of Electrical and Computer Engineering College ParkMD 20742USA

Gut–brain axis(GBA)communication relies on serotonin(5-HT)signaling between the gut epithelium and the peripheral nervous system,where 5-HT release patterns from the basolateral(i.e.,bottom)side of the epithelium activate nerve *** have been few quantitative studies of this gut-neuron signaling due to a lack of real-time measurement tools that can access the basolateral gut *** vitro platforms allow quantitative studies of cultured gut tissue,but they mainly employ offline and endpoint assays that cannot resolve dynamic molecular-release ***,we present the modification of a microporous cell culture membrane with carbon nanotube-coated gold(Au-CNT)electrodes capable of continuous,label-free,and direct detection of 5-HT at physiological *** characterization of single-walled carbon nanotube(SWCNT)-coated Au electrodes shows increased electroactive surface area,5-HT specificity,sensitivity,and saturation time,which are correlated with the CNT film drop-cast *** microliters of CNT films,with a 10-min saturation time,0.6μA/μM 5-HT sensitivity,and reliable detection within a linear range of 500 nM–10μM 5-HT,can be targeted for high-concentration,high-time-resolution 5-HT *** films(12.5μL)with a 2-h saturation time,4.5μA/μM 5-HT sensitivity,and quantitative detection in the linear range of 100 nM–1μM can target low concentrations with low time *** electrodes achieved continuous detection of dynamic diffusion across the porous membrane,mimicking basolateral 5-HT release from cells,and detection of cell-released 5-HT from separately cultured RIN14B cell ***-integrated cell culture systems such as this can improve in vitro molecular detection mechanisms and aid in quantitative GBA signaling studies.

关键词： release saturation dynamic

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Neural population dynamics in songbird RA and HVC during learned motor-vocal behavior

arXiv

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arXiv 2024年

作者： Tostado-Marcos, Pablo Arneodo, Ezequiel M. Ostrowski, Lauren Brown, Daril E. Perez, Xavier A. Kadwory, Adam Stanwicks, Lauren L. Alothman, Abdullah Gentner, Timothy Q. Gilja, Vikash Department of Bioengineering University of California San Diego 9500 Gilman Drive La Jolla CA92093 United States Department of Electrical and Computer Engineering University of California San Diego 9500 Gilman Drive La Jolla CA92093 United States Department of Psychology University of California San Diego 9500 Gilman Drive La Jolla CA92093 United States Department of Neurobiology University of California San Diego 9500 Gilman Drive La Jolla CA92093 United States Neurosciences Graduate Program University of California San Diego 9500 Gilman Drive La Jolla CA92093 United States

Complex, learned motor behaviors involve the coordination of large-scale neural activity across multiple brain regions, but our understanding of the population-level dynamics within different regions tied to the same behavior remains limited. Here, we investigate the neural population dynamics underlying learned vocal production in awake-singing songbirds. We use Neuropixels probes to record the simultaneous extracellular activity of populations of neurons in two regions of the vocal motor pathway. In line with observations made in non-human primates during limb-based motor tasks, we show that the population-level activity in both the premotor nucleus HVC and the motor nucleus RA is organized on low-dimensional neural manifolds upon which coordinated neural activity is well described by temporally structured trajectories during singing behavior. Both the HVC and RA latent trajectories provide relevant information to predict vocal sequence transitions between song syllables. However, the dynamics of these latent trajectories differ between regions. Our state-space models suggest a unique and continuous-over-time correspondence between the latent space of RA and vocal output, whereas the corresponding relationship for HVC exhibits a higher degree of neural variability. We then demonstrate that comparable high-fidelity reconstruction of continuous vocal outputs can be achieved from HVC and RA neural latents and spiking activity. Unlike those that use spiking activity, however, decoding models using neural latents generalize to novel sub-populations in each region, consistent with the existence of preserved manifolds that confine vocal-motor activity in HVC and RA. © 2024, CC BY.

关键词： Dynamics

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3D-Printed electrochemical sensor-integrated transwell systems

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Microsystems & Nanoengineering 2020年第1期6卷 357-368页

作者： Pradeep Ramiah Rajasekaran Ashley Augustiny Chapin David N.Quan Jens Herberholz William E.Bentley Reza Ghodssi Institute for Systems Research University of MarylandCollege ParkMDUSA Fischell Department of Bioengineering University of MarylandCollege ParkMDUSA Department of Psychology and Neuroscience and Cognitive Science Program University of MarylandCollege ParkMDUSA Institute for Bioscience and Biotechnology Research University of MarylandCollege ParkMDUSA Robert E.Fischell Institute for Biomedical Devices University of MarylandCollege ParkMDUSA Department of Electrical and Computer Engineering University of MarylandCollege ParkMDUSA

This work presents a 3D-printed,modular,electrochemical sensor-integrated transwell system for monitoring cellular and molecular events in situ without sample extraction or microfluidics-assisted downstream *** additive manufacturing techniques such as 3D printing,shadow masking,and molding are used to fabricate this modular system,which is autoclavable,biocompatible,and designed to operate following standard operating protocols(SOPs)of cellular *** to the platform is a flexible porous membrane,which is used as a cell culture substrate similarly to a commercial transwell *** electrochemical sensors fabricated on the membrane allow direct access to cells and their products.A pair of gold electrodes on the top side of the membrane measures impedance over the course of cell attachment and growth,characterized by an exponential decrease(~160%at 10Hz)due to an increase in the double layer capacitance from secreted extracellular matrix(ECM)*** voltammetry(CV)sensor electrodes,fabricated on the bottom side of the membrane,enable sensing of molecular release at the site of cell culture without the need for downstream ***-time detection of ferrocene dimethanol injection across the membrane showed a three order-of-magnitude higher signal at the membrane than in the bulk media after reaching *** modular sensor-integrated transwell system allows unprecedented direct,real-time,and noninvasive access to physical and biochemical information,which cannot be obtained in a conventional transwell system.

关键词： transwell electrochemical culture

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Plug-and-play stability for intracortical brain-computer interfaces: a one-year demonstration of seamless brain-to-text communication 23

Plug-and-play stability for intracortical brain-computer int...

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Proceedings of the 37th International Conference on Neural Information Processing Systems

作者： Chaofei Fan Nick Hahn Foram Kamdar Donald Avansino Guy H. Wilson Leigh Hochberg Krishna V. Shenoy Jaimie M. Henderson Francis R. Willett Department of Computer Science Stanford University Department of Neurosurgery Stanford University Howard Hughes Medical Institute at Stanford University Department of Neuroscience Stanford University School of Engineering and Carney Institute for Brain Science Brown University and VA RR & D Center for Neurorestoration and Neurotechnology VA Providence Healthcare System and Center for Neurotechnology and Neurorecovery Department of Neurology Massachusetts General Hospital Harvard Medical School Bio-X Program Stanford University and Department of Neurobiology Stanford University and Department of Bioengineering Stanford University and Wu Tsai Neurosciences Institute Stanford University and Howard Hughes Medical Institute at Stanford University and Department of Electrical Engineering Stanford University Department of Neurosurgery Stanford University and Wu Tsai Neurosciences Institute Stanford University

Intracortical brain-computer interfaces (iBCIs) have shown promise for restoring rapid communication to people with neurological disorders such as amyotrophic lateral sclerosis (ALS). However, to maintain high performance over time, iBCIs typically need frequent recalibration to combat changes in the neural recordings that accrue over days. This requires iBCI users to stop using the iBCI and engage in supervised data collection, making the iBCI system hard to use. In this paper, we propose a method that enables self-recalibration of communication iBCIs without interrupting the user. Our method leverages large language models (LMs) to automatically correct errors in iBCI outputs. The self-recalibration process uses these corrected outputs ("pseudo-labels") to continually update the iBCI decoder online. Over a period of more than one year (403 days), we evaluated our Continual Online Recalibration with Pseudo-labels (CORP) framework with one clinical trial participant. CORP achieved a stable decoding accuracy of 93.84% in an online handwriting iBCI task, significantly outperforming other baseline methods. Notably, this is the longest-running iBCI stability demonstration involving a human participant. Our results provide the first evidence for long-term stabilization of a plug-and-play, high-performance communication iBCI, addressing a major barrier for the clinical translation of iBCIs.

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