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Granular Computing: An Augmented Scheme of Degranulation Through a Modified Partition Matrix

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arXiv 2020年

作者： Xu, Kaijie Pedrycz, Witold Li, Zhiwu Xing, Mengdao School of Electro-Mechanical Engineering Xidian University Xi’an710071 China Department of remote sensing science and technology School of Electronic Engineering Xidian University Xi’an710071 China Department of Electrical and Computer Engineering University of Alberta EdmontonABT6R 2V4 Canada Systems Research Institute Polish Academy of Sciences Warsaw Poland Faculty of Engineering King Abdulaziz University Jeddah21589 Saudi Arabia Institute of Systems Engineering Macau University of Science and Technology Macau999078 China National Laboratory of Radar Signal Processing Xidian University Xi’an710071 China Collaborative Innovation Center of Information Sensing and Understanding Xidian University Xi’an710071 China National Key Laboratory of Microwave Imaging Technology Institute of Electronics Chinese Academy of Sciences Beijing100190 China

As an important technology in artificial intelligence Granular Computing (GrC) has emerged as a new multi-disciplinary paradigm and received much attention in recent years. Information granules forming an abstract and efficient characterization of large volumes of numeric data have been considered as the fundamental constructs of GrC. By generating centroids (prototypes) and partition matrix, fuzzy clustering is a commonly encountered way of information granulation. As a reverse process of granulation, degranulation involves data reconstruction completed on a basis of the granular representatives (decoding information granules into numeric data). Previous studies have shown that there is a relationship between the reconstruction error and the performance of the granulation process. Typically, the lower the degranulation error is, the better performance of granulation process becomes. However, the existing methods of degranulation usually cannot restore the original numeric data, which is one of the important reasons behind the occurrence of the reconstruction error. To enhance the quality of reconstruction (degranulation), in this study, we develop an augmented scheme through modifying the partition matrix. By proposing the augmented scheme, we dwell on a novel collection of granulation-degranulation mechanisms. In the constructed approach, the prototypes can be expressed as the product of the dataset matrix and the partition matrix. Then, in the degranulation process, the reconstructed numeric data can be decomposed into the product of the partition matrix and the matrix of prototypes. Both the granulation and degranulation are regarded as generalized rotation between the data subspace and the prototype subspace with the partition matrix and the fuzzification factor. By modifying the partition matrix, the new partition matrix is constructed through a series of matrix operations. We offer a thorough analysis of the developed scheme. Copyright © 2020, The Authors. Al

关键词： Granulation

BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

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Nature methods 2023年第6期20卷 824-835页

作者： Linus Manubens-Gil Zhi Zhou Hanbo Chen Arvind Ramanathan Xiaoxiao Liu Yufeng Liu Alessandro Bria Todd Gillette Zongcai Ruan Jian Yang Miroslav Radojević Ting Zhao Li Cheng Lei Qu Siqi Liu Kristofer E Bouchard Lin Gu Weidong Cai Shuiwang Ji Badrinath Roysam Ching-Wei Wang Hongchuan Yu Amos Sironi Daniel Maxim Iascone Jie Zhou Erhan Bas Eduardo Conde-Sousa Paulo Aguiar Xiang Li Yujie Li Sumit Nanda Yuan Wang Leila Muresan Pascal Fua Bing Ye Hai-Yan He Jochen F Staiger Manuel Peter Daniel N Cox Michel Simonneau Marcel Oberlaender Gregory Jefferis Kei Ito Paloma Gonzalez-Bellido Jinhyun Kim Edwin Rubel Hollis T Cline Hongkui Zeng Aljoscha Nern Ann-Shyn Chiang Jianhua Yao Jane Roskams Rick Livesey Janine Stevens Tianming Liu Chinh Dang Yike Guo Ning Zhong Georgia Tourassi Sean Hill Michael Hawrylycz Christof Koch Erik Meijering Giorgio A Ascoli Hanchuan Peng Institute for Brain and Intelligence Southeast University Nanjing China. Microsoft Corporation Redmond WA USA. Tencent AI Lab Bellevue WA USA. Computing Environment and Life Sciences Directorate Argonne National Laboratory Lemont IL USA. Kaya Medical Seattle WA USA. University of Cassino and Southern Lazio Cassino Italy. Center for Neural Informatics Structures and Plasticity Krasnow Institute for Advanced Study George Mason University Fairfax VA USA. Faculty of Information Technology Beijing University of Technology Beijing China. Beijing International Collaboration Base on Brain Informatics and Wisdom Services Beijing China. Nuctech Netherlands Rotterdam the Netherlands. Janelia Research Campus Howard Hughes Medical Institute Ashburn VA USA. Department of Electrical and Computer Engineering University of Alberta Edmonton Alberta Canada. Ministry of Education Key Laboratory of Intelligent Computation and Signal Processing Anhui University Hefei China. Paige AI New York NY USA. Scientific Data Division and Biological Systems and Engineering Division Lawrence Berkeley National Lab Berkeley CA USA. Helen Wills Neuroscience Institute and Redwood Center for Theoretical Neuroscience UC Berkeley Berkeley CA USA. RIKEN AIP Tokyo Japan. Research Center for Advanced Science and Technology (RCAST) The University of Tokyo Tokyo Japan. School of Computer Science University of Sydney Sydney New South Wales Australia. Texas A&M University College Station TX USA. Cullen College of Engineering University of Houston Houston TX USA. Graduate Institute of Biomedical Engineering National Taiwan University of Science and Technology Taipei Taiwan. National Centre for Computer Animation Bournemouth University Poole UK. PROPHESEE Paris France. Department of Neuroscience Columbia University New York NY USA. Mortimer B. Zuckerman Mind Brain Behavior Institute Columbia University New York NY USA. Department of Computer Science Northern Illinois Universit

BigNeuron is an open community bench-testing platform with the goal of setting open standards for accurate and fast automatic neuron tracing. We gathered a diverse set of image volumes across several species that is representative of the data obtained in many neuroscience laboratories interested in neuron tracing. Here, we report generated gold standard manual annotations for a subset of the available imaging datasets and quantified tracing quality for 35 automatic tracing algorithms. The goal of generating such a hand-curated diverse dataset is to advance the development of tracing algorithms and enable generalizable benchmarking. Together with image quality features, we pooled the data in an interactive web application that enables users and developers to perform principal component analysis, t-distributed stochastic neighbor embedding, correlation and clustering, visualization of imaging and tracing data, and benchmarking of automatic tracing algorithms in user-defined data subsets. The image quality metrics explain most of the variance in the data, followed by neuromorphological features related to neuron size. We observed that diverse algorithms can provide complementary information to obtain accurate results and developed a method to iteratively combine methods and generate consensus reconstructions. The consensus trees obtained provide estimates of the neuron structure ground truth that typically outperform single algorithms in noisy datasets. However, specific algorithms may outperform the consensus tree strategy in specific imaging conditions. Finally, to aid users in predicting the most accurate automatic tracing results without manual annotations for comparison, we used support vector machine regression to predict reconstruction quality given an image volume and a set of automatic tracings.

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Experimental observation of real spectra in Parity-Time symmetric ZRC dimers with positive and negative frequencies

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arXiv 2020年

作者： Tabeu, Stéphane Boris Fotsa-Ngaffo, Fernande Tagouegni, Senghor Shouno, Kazuhiro Kenfack-Jiotsa, Aurélien Laboratory of Mechanics Materials and Structures Department of Physics Faculty of Science University of Yaounde I P.O. Box 812 Yaounde Cameroon Nonlinear Physics and Complex Systems Group Department of Physics Higher Teacher’s Training College University of Yaounde I P.O. Box 47 Yaounde Cameroon Laboratory of Electronics and Signal Processing Department of Electrical and Telecommunication Engineering National Advanced School of Engineering University of Yaounde I P.O. Box 8390 Yaounde Cameroon Institute of Wood technologies University of Yaounde I P.O. Box 306 Mbalmayo Cameroon Graduate School of Systems and Information Engineering University of Tsukuba Ibaraki305-8573 Japan P.O. Box 105 Yaounde Cameroon

We present in this work the first experimental observation of oscillations in Parity-Time symmetric ZRC dimers. The system obtained is of first order ordinary differential equation due to the use of imaginary resistors. The coupled cells must share the same type of frequency: positive or negative. We observed the real and imaginary parts of the voltage across the components of a ZRC cell. Exceptional points are well identified. This work may be very useful in the generation of new type of oscillators. It can also be used in the design of new optoelectronic devices for major applications in the transport of information and the mimics of two-level systems for quantum computing. Copyright © 2020, The Authors. All rights reserved.

关键词： Resistors

Common Limitations of image processing Metrics: A Picture Story

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arXiv 2021年

作者： Reinke, Annika Tizabi, Minu D. Sudre, Carole H. Eisenmann, Matthias Rädsch, Tim Baumgartner, Michael Acion, Laura Antonelli, Michela Arbel, Tal Bakas, Spyridon Bankhead, Peter Benis, Arriel Blaschko, Matthew Buettner, Florian Cardoso, M. Jorge Chen, Jianxu Cheplygina, Veronika Christodoulou, Evangelia Cimini, Beth A. Collins, Gary S. Engelhardt, Sandy Farahani, Keyvan Ferrer, Luciana Galdran, Adrian van Ginneken, Bram Glocker, Ben Godau, Patrick Haase, Robert Hamprecht, Fred Hashimoto, Daniel A. Heckmann-Nötzel, Doreen Hirsch, Peter Hoffman, Michael M. Huisman, Merel Isensee, Fabian Jannin, Pierre Kahn, Charles E. Kainmueller, Dagmar Kainz, Bernhard Karargyris, Alexandros Karthikesalingam, Alan Kavur, A. Emre Kenngott, Hannes Kleesiek, Jens Kleppe, Andreas Koehler, Sven Kofler, Florian Kopp-Schneider, Annette Kooi, Thijs Kozubek, Michal Kreshuk, Anna Kurc, Tahsin Landman, Bennett A. Litjens, Geert Madani, Amin Maier-Hein, Klaus Martel, Anne L. Mattson, Peter Meijering, Erik Menze, Bjoern Moher, David Moons, Karel G.M. Müller, Henning Nichyporuk, Brennan Nickel, Felix Noyan, M. Alican Petersen, Jens Polat, Gorkem Rafelski, Susanne M. Rajpoot, Nasir Reyes, Mauricio Rieke, Nicola Riegler, Michael A. Rivaz, Hassan Saez-Rodriguez, Julio Sánchez, Clara I. Schroeter, Julien Saha, Anindo Selver, M. Alper Sharan, Lalith Shetty, Shravya Smeden, Maarten V.A.N. Stieltjes, Bram Summers, Ronald M. Taha, Abdel A. Tiulpin, Aleksei Tsaftaris, Sotirios A. Calster, Ben V.A.N. Varoquaux, Gaël Wiesenfarth, Manuel Yaniv, Ziv R. Jäger, Paul Maier-Hein, Lena Division of Intelligent Medical Systems and HI Helmholtz Imaging Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Division of Intelligent Medical Systems Heidelberg Germany NCT Heidelberg DKFZ University Medical Center Heidelberg Germany MRC Unit for Lifelong Health and Ageing UCL Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom School of Biomedical Engineering and Imaging Science King’s College London London United Kingdom Division of Medical Image Computing Heidelberg Germany Instituto de Cálculo CONICET – Universidad de Buenos Aires Buenos Aires Argentina Centre for Medical Image Computing University College London London United Kingdom McGill University Montréal Canada Division of Computational Pathology Dept of Pathology & Laboratory Medicine Indiana University School of Medicine IU Health Information and Translational Sciences Building Indianapolis United States University of Pennsylvania Richards Medical Research Laboratories FL7 PhiladelphiaPA United States Institute of Genetics and Cancer University of Edinburgh Edinburgh United Kingdom Department of Digital Medical Technologies Holon Institute of Technology Holon Israel European Federation for Medical Informatics Le Mont-sur-Lausanne Switzerland Center for Processing Speech and Images Department of Electrical Engineering KU Leuven Kasteelpark Arenberg 10 - box 2441 Leuven3001 Belgium Frankfurt/Mainz DKFZ UCT Frankfurt-Marburg Germany Heidelberg Germany Goethe University Frankfurt Department of Medicine Germany Goethe University Frankfurt Department of Informatics Germany Frankfurt Cancer Insititute Germany Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Dortmund Germany Department of Computer Science IT University of Copenhagen Copenhagen Denmark Imaging Platform Broad Institute of MIT and Harvard CambridgeMA United States Centre for St

While the importance of automatic image analysis is continuously increasing, recent meta-research revealed major flaws with respect to algorithm validation. Performance metrics are particularly key for meaningful, objective, and transparent performance assessment and validation of the used automatic algorithms, but relatively little attention has been given to the practical pitfalls when using specific metrics for a given image analysis task. These are typically related to (1) the disregard of inherent metric properties, such as the behaviour in the presence of class imbalance or small target structures, (2) the disregard of inherent data set properties, such as the non-independence of the test cases, and (3) the disregard of the actual biomedical domain interest that the metrics should reflect. This living dynamically document has the purpose to illustrate important limitations of performance metrics commonly applied in the field of image analysis. In this context, it focuses on biomedical image analysis problems that can be phrased as image-level classification, semantic segmentation, instance segmentation, or object detection task. The current version is based on a Delphi process on metrics conducted by an international consortium of image analysis experts from more than 60 institutions worldwide. © 2021, CC BY.

关键词： Medical imaging

Normalization before shaking toward learning symmetrically distributed representation without margin in speech emotion recognition

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arXiv 2018年

作者： Huang, Che-Wei Narayanan, Shrikanth S. Department of Electrical Engineering and Signal and Image Processing Institute University of Southern California Los AngelesCA90089 United States

Regularization is crucial to the success of many practical deep learning models, in particular in a more often than not scenario where there are only a few to a moderate number of accessible training samples. In addition to weight decay, data augmentation and dropout, regularization based on multi-branch architectures, such as Shake-Shake regularization, has been proven successful in many applications and attracted more and more attention. However, beyond model-based representation augmentation, it is unclear how Shake-Shake regularization helps to provide further improvement on classification tasks, let alone the baffling interaction between batch normalization and shaking. In this work, we present our investigation on Shake-Shake regularization, drawing connections to the vicinal risk minimization principle and discriminative feature learning in verification tasks. Furthermore, we identify a strong resemblance between batch normalized residual blocks and batch normalized recurrent neural networks, where both of them share a similar convergence behavior, which could be mitigated by a proper initialization of batch normalization. Based on the findings, our experiments on speech emotion recognition demonstrate simultaneously an improvement on the classification accuracy and a reduction on the generalization gap both with statistical significance. Copyright © 2018, The Authors. All rights reserved.

关键词： Recurrent neural networks

Quality Inspection of Phalaenopsis Hybrids Using Hyperspectral Band Selection Techniques

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Quality Inspection of Phalaenopsis Hybrids Using Hyperspectr...

IEEE International Symposium on Geoscience and Remote Sensing (IGARSS)

作者： Yen-Chieh Ouyang Bo-Han Chen Meng-Chueh Lee Tsang-Sen Liu Mang Ou-Yang Hsian-Min Chen Chao-Cheng Wu Chia-Hsien Wen Min-Shao Shih Chein-I Chang Yung-Jhe Yan Department of Electrical Engineering National Chung Hsing University Taiwan Institute of communication Engineering National Chung Hsing University Taiwan Taiwan Agriculture Research Institute Nantou Taiwan Department of Electrical and Computer Engineering National Chiao-Tung University Hsinchu City Taiwan Center for Quantitative Imaging in Medicine Taichung Veterans General Hospital Taiwan Department of Electrical Engineering National Taipei University of Technology Taipei Taiwan Department of Computer Science and Information Management Providence University Taiwan Remote Sensing Signal and Image Processing Laboratory University of Maryland Baltimore MD USA

Fusarium wilt on Phalaenopsis is a disease that makes farmers suffer seriously. Although Phalaenopsis does not die immediately with Fusarium wilt, it seriously decreases the quality that buyers cannot accept. In this paper, we introduce an emerging method to detect Fusarium wilt at the base of Phalaenopsis stems. The detection model divides Phalaenopsis samples into two categories, healthy and infection. The band selection (BS) processing technique based on band prioritization (BP) is applied to extract significant bands and eliminate redundant bands. Subsequently, some algorithms which are constrained energy minimization (CEM), spectral information divergence(SID) and SeQuential N-FINDER to detect the Fusarium wilt, and we hope the research would help farmers decrease their losses.

关键词： Hyperspectral imaging Support vector machines Diseases signal to noise ratio Hybrid fiber coaxial cables Correlation

Noisy expectation-maximization: Applications and generalizations

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arXiv 2018年

作者： Osoba, Osonde Kosko, Bart Signal and Image Processing Institute Electrical Engineering Department University of Southern California Los AngelesCA90089-2564 United States

We present a noise-injected version of the Expectation-Maximization (EM) algorithm: the Noisy Expectation Maximization (NEM) algorithm. The NEM algorithm uses noise to speed up the convergence of the EM algorithm. The NEM theorem shows that injected noise speeds up the average convergence of the EM algorithm to a local maximum of the likelihood surface if a positivity condition holds. The generalized form of the noisy expectation-maximization (NEM) algorithm allow for arbitrary modes of noise injection including adding and multiplying noise to the data. We demonstrate these noise benefits on EM algorithms for the Gaussian mixture model (GMM) with both additive and multiplicative NEM noise injection. A separate theorem (not presented here) shows that the noise benefit for independent identically distributed additive noise decreases with sample size in mixture models. This theorem implies that the noise benefit is most pronounced if the data is sparse. Injecting blind noise only slowed convergence. Copyright © 2018, The Authors. All rights reserved.

关键词： Maximum principle

Illumination estimation challenge: Experience of past two years

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arXiv 2020年

作者： Ershov, Egor I. Savchik, Alex Semenkov, Ilya Banić, Nikola Koščević, Karlo Subašić, Marko Belokopytov, Alexander Li, Zhihao Terekhin, Arseniy Senshina, Daria Nikonorov, Artem Qian, Yanlin Buzzelli, Marco Riva, Riccardo Bianco, Simone Schettini, Raimondo Lončarić, Sven Nikolaev, Dmitry Institute for Information Transmission Problems RAS Bol’shoi Karetnyi per. 19 Moscow Russia National Research University Higher School of Economics Myasnitskaya Ulitsa 20 Moscow101000 Russia Image Processing Systems Institute of RAS Molodogvardeyskaya st. 151 Samara Russia Gideon Brothers Radnička 177 Zagreb10000 Croatia Faculty of Electrical Engineering and Computing University of Zagreb Unska 3 Zagreb10000 Croatia University of Milano – Bicocca Department of Informatics Systems and Communication Viale Sarca Milan336 Italy Nanjing University Xianlin Road 163 Qixia District NanjingJiangsu Province China Huawei MultiMedia Team

Illumination estimation is the essential step of computational color constancy, one of the core parts of various image processing pipelines of modern digital cameras. Having an accurate and reliable illumination estimation is important for reducing the illumination influence on the image colors. To motivate the generation of new ideas and the development of new algorithms in this field, the 2nd Illumination estimation challenge (IEC#2) was conducted. The main advantage of testing a method on a challenge over testing in on some of the known datasets is the fact that the ground-truth illuminations for the challenge test images are unknown up until the results have been submitted, which prevents any potential hyperparameter tuning that may be biased. The challenge had several tracks: general, indoor, and two-illuminant with each of them focusing on different parameters of the scenes. Other main features of it are a new large dataset of images (about 5000) taken with the same camera sensor model, a manual markup accompanying each image, diverse content with scenes taken in numerous countries under a huge variety of illuminations extracted by using the SpyderCube calibration object, and a contest-like markup for the images from the Cube+ dataset that was used in IEC#1. This paper focuses on the description of the past two challenges, algorithms which won in each track, and the conclusions that were drawn based on the results obtained during the 1st and 2nd challenge that can be useful for similar future developments. © 2020, CC BY.

关键词： Large dataset

AI-based volumetric six-tissue body composition quantification from CT cardiac attenuation scans for mortality prediction: a multicentre study

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The Lancet. Digital health 2025年第5期7卷 100862页

作者： Jirong Yi Anna M Marcinkiewicz Aakash Shanbhag Robert J H Miller Jolien Geers Wenhao Zhang Aditya Killekar Nipun Manral Mark Lemley Mikolaj Buchwald Jacek Kwiecinski Jianhang Zhou Paul B Kavanagh Joanna X Liang Valerie Builoff Terrence D Ruddy Andrew J Einstein Attila Feher Edward J Miller Albert J Sinusas Daniel S Berman Damini Dey Piotr J Slomka Departments of Medicine (Division of Artificial Intelligence in Medicine) Biomedical Sciences and Imaging Cedars-Sinai Medical Center Los Angeles CA USA. Departments of Medicine (Division of Artificial Intelligence in Medicine) Biomedical Sciences and Imaging Cedars-Sinai Medical Center Los Angeles CA USA Center of Radiological Diagnostics National Medical Institute of the Ministry of the Interior and Administration Warsaw Poland. Signal and Image Processing Institute Ming Hsieh Department of Electrical and Computer Engineering University of Southern California Los Angeles CA USA. Department of Cardiac Sciences University of Calgary Calgary AB Canada. Department of Cardiology Centrum voor Hart-en Vaatziekten (CHVZ) Universitair Ziekenhuis Brussel (UZ Brussel) Vrije Universiteit Brussel (VUB) Brussels Belgium. Department of Interventional Cardiology and Angiology Institute of Cardiology Warsaw Poland. Division of Cardiology University of Ottawa Heart Institute Ottawa ON Canada. Division of Cardiology Department of Medicine and Department of Radiology Columbia University Irving Medical Center and New York-Presbyterian Hospital New York NY USA. Section of Cardiovascular Medicine Department of Internal Medicine Yale University School of Medicine New Haven CT USA. Departments of Medicine (Division of Artificial Intelligence in Medicine) Biomedical Sciences and Imaging Cedars-Sinai Medical Center Los Angeles CA USA. Electronic address: piotr.slomka@***.

BACKGROUND:CT attenuation correction (CTAC) scans are routinely obtained during cardiac perfusion imaging, but currently only used for attenuation correction and visual calcium estimation. We aimed to develop a novel artificial intelligence (AI)-based approach to obtain volumetric measurements of chest body composition from CTAC scans and to evaluate these measures for all-cause mortality risk stratification. METHODS:We applied AI-based segmentation and image-processing techniques on CTAC scans from a large international image-based registry at four sites (Yale University, University of Calgary, Columbia University, and University of Ottawa), to define the chest rib cage and multiple tissues. Volumetric measures of bone, skeletal muscle, subcutaneous adipose tissue, intramuscular adipose tissue (IMAT), visceral adipose tissue (VAT), and epicardial adipose tissue (EAT) were quantified between automatically identified T5 and T11 vertebrae. The independent prognostic value of volumetric attenuation and indexed volumes were evaluated for predicting all-cause mortality, adjusting for established risk factors and 18 other body composition measures via Cox regression models and Kaplan-Meier curves. FINDINGS:The end-to-end processing time was less than 2 min per scan with no user interaction. Between 2009 and 2021, we included 11 305 participants from four sites participating in the REFINE SPECT registry, who underwent single-photon emission computed tomography cardiac scans. After excluding patients who had incomplete T5-T11 scan coverage, missing clinical data, or who had been used for EAT model training, the final study group comprised 9918 patients. 5451 (55%) of 9918 participants were male and 4467 (45%) of 9918 participants were female. Median follow-up time was 2·48 years (IQR 1·46-3·65), during which 610 (6%) patients died. High VAT, EAT, and IMAT attenuation were associated with an increased all-cause mortality risk (adjusted hazard ratio 2·39, 95% CI 1·92-2·96; p<

关键词： image segmentation