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International IEEE/EMBS Conference on Neural engineering, CNE

作者： Bhavna Gupta Mason L. Perillo Isabelle E. Christensen James R. Siegenthaler Robert Rechenberg Michael F. Becker Wen Li Erin K. Purcell Neuroscience Program at Michigan State University East Lansing MI USA Department of Biomedical Engineering Michigan State University East Lansing MI USA Department of Mechanical Engineering Michigan State University East Lansing MI USA Fraunhofer Center Midwest East Lansing MI USA Department of Electrical and Computer Engineering Michigan State University East Lansing MI USA Department of Biomedical Engineering and the Department of Electrical and Computer Engineering Michigan State University East Lansing MI USA

Technologies capable of detecting changes in neurochemical signals can be used to understand the underlying mechanisms of neurological diseases. They are also important components of systems which rely on neurochemical sensing as a source of feedback for closed-loop neuromodulation[1], [2]. Recently, our research team has developed a boron-doped diamond microelectrode (BDDME) fiber for neurotransmitter detection using fast-scan cyclic voltammetry (FSCV). These electrodes have several potential benefits in comparison to more traditional, carbon fiber microelectrodes (CFMEs), including a wider working potential window, customizable fabrication, and increased resistance to etching. Given the unique characteristics of BDDMEs in comparison to CFMEs, there is a need to re-examine and optimize the potential waveforms used for neurotransmitter detection. In this study, we explored waveform parameters (holding potential, scan rate, and application frequency) for serotonin detection on BDDME fibers. We found that frequency attenuation of normalized peak currents was mitigated on BDDMEs in comparison to CFMEs. Effects of varying holding potential and scan rate were qualitatively similar between the two electrode types. Frequency effects suggest that repeating the measurements at BDDME at higher frequency does not decrease the current as drastically as on the CFME. However, both electrodes showed optimal current response at 10 Hz. These studies represent an important step forward in our development of a next-generation, chronically implantable electrochemical sensor for neurotransmitter detection.

关键词： Resistance Electric potential Optical fiber sensors Microelectrodes Neurotransmitters Diamonds Frequency measurement

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High-Resolution Imaging of Human Cancer Proteins Using Microprocessor Materials

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ChemBioChem 2022年第17期23卷 e202200310-e202200310页

作者： Solares, Maria J. Jonaid, G.M. Luqiu, William Y. Berry, Samantha Khadela, Janki Liang, Yanping Evans, Madison C. Pridham, Kevin J. Dearnaley, William J. Sheng, Zhi Kelly, Deborah F. Molecular Cellular and Integrative Biosciences Graduate Program Huck Institutes of the Life Sciences Pennsylvania State University University Park 16802 PA United States Bioinformatics and Genomics Graduate Program Huck Institutes of the Life Sciences Pennsylvania State University University Park 16802 PA United States Department of Biomedical Engineering Pennsylvania State University University Park 16802 PA United States Center for Structural Oncology Pennsylvania State University University Park 16802 PA United States Department of Electrical and Computer Engineering Duke University Durham 27708 NC United States Fralin Biomedical Research Institute at VTC Virginia Tech Roanoke 24016 VA United States

Mutations in tumor suppressor genes, such as Tumor Protein 53 (TP53), are heavily implicated in aggressive cancers giving rise to gain- and loss-of-function phenotypes. While individual domains of the p53 protein have been studied extensively, structural information for full-length p53 remains incomplete. Functionalized microprocessor chips (microchips) with properties amenable to electron microscopy permitted us to visualize complete p53 assemblies for the first time. The new structures revealed p53 in an inactive dimeric state independent of DNA binding. Residues located at the protein-protein interface corresponded with modification sites in cancer-related hot spots. Changes in these regions may amplify the toxic effects of clinical mutations. Taken together, these results contribute advances in technology and imaging approaches to decode native protein models in different states of activation. © 2022 Wiley-VCH GmbH.

关键词： cancer electron microscopy microchips p53, molecular modeling

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Multiplex Magnetic Biosensor Microarrays Facilitate Personalized Vaccination Schedules for Sars-Cov-2 Variants

SSRN

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SSRN 2024年

作者： Um, Hyun-Kyung Kim, Songeun Wang, Shan X. Lee, Jung-Rok Department of Mechanical and Biomedical Engineering Ewha Womans University Seoul03760 Korea Republic of Graduate Program in Smart Factory Ewha Womans University Seoul03760 Korea Republic of Department of Materials Science and Engineering Stanford University Stanford CA94305 United States Department of Electrical Engineering Stanford University Stanford CA94305 United States

Rapid, sensitive, multiplexed antibody detection technologies are essential for assessing vaccine efficacy and recipient immunity against viruses. As severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants continue to emerge, and the fact that novel viruses may pose potential threats in the near future, personalized vaccines can be precisely tailored to an individual’s measured immunity to help mitigate the symptoms of infection and viral spread. Here, we present giant magnetoresistive (GMR) biosensor microarrays for the quantitative multiplexed detection of antibodies against SARS-CoV-2 variants. The multiplexed GMR biosensor microarrays demonstrated high sensitivity, comparable to that of the single-plex enzyme-linked immunosorbent assay, enabling multiplexed measurements using blood obtained from finger pricks. Additionally, the GMR biosensor microarrays demonstrated compatibility with clinical samples and could detect variant-specific antibodies in serum, allowing for the assessment of current immunity status. Notably, an increased concentration of antibodies against the Omicron variant was clearly observed two weeks after receiving an Omicron-based booster vaccination. These results indicate that GMR biosensor microarrays offer a practical point-of-care tool for monitoring humoral immunity and guiding personalized vaccination schedules, thereby supporting immunity management against SARS-CoV-2 and future viral threats. © 2024, The Authors. All rights reserved.

关键词： Giant magnetoresistance

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Alignment-Free Estimation of Read to Genome Distances and Its Applications 29th

Alignment-Free Estimation of Read to Genome Distances and...

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29th International Conference on Research in Computational Molecular Biology, RECOMB 2025

作者： Şapcı, Ali Osman Berk Mirarab, Siavash Bioinformatics and Systems Biology Graduate Program UC San Diego San DiegoCA92093 United States Department of Electrical and Computer Engineering UC San Diego San DiegoCA92093 United States

ISBN: (纸本)9783031902512

Searching reads from unknown origins in a reference database and finding evolutionarily similar genomes is central to many applications. Quantifying the similarity by estimating the distance between each read and matching references could further help downstream analyses such as taxonomic characterization or even placing the read on a reference phylogeny. Such distances can be computed using alignment. Since alignment becomes impractical for ultra-large reference databases, many use k-mer-based tools for downstream tasks, but these methods do not compute distances. We introduce krepp to compute the distance between a read and a genome using a maximum likelihood framework built around k-mers. We further introduce algorithms to place reads on a reference tree. Empirical evaluations show that krepp accurately estimates distances, scales well with large databases, and can place short reads coming from any part of the genome on a reference phylogeny. © The Author(s), under exclusive license to Springer Nature Switzerland AG 2025.

关键词： Average nucleotide identity Metagenomics Phylogenetic placement

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Passivity of nonlinear time-delay systems

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IFAC-PapersOnLine 2023年第2期56卷 8568-8573页

作者： Yu Kawano Saeed Ahmed Michele Cucuzzella Jacquelien M.A. Scherpen Graduate School of Advanced Science and Engineering Hiroshima University Higashi-hiroshima 739-8527 Japan Jan C. Willems Center for Systems and Control ENTEG Faculty of Science and Engineering University of Groningen 9747 AG Groningen The Netherlands Department of Electrical Computer and Biomedical Engineering University of Pavia 27100 Pavia Italy

This paper presents passivity-based control of nonlinear systems with retarded delays in the state. To this end, we first show that the standard passivity concept can naturally be generalized to time-delay systems, which readily implies that a feedback interconnection (with or without communication delays) of passive time-delay systems is also passive. Then, we propose a storage functional for passivity analysis and further use it for stability analysis of controlled-passive time-delay systems. In particular, invoking an invariance principle for retarded functional differential equations, we show that a passive time-delay system can always be stabilized by a static output feedback controller under a delayed version of the zero-state detectability assumption.

关键词： Passivity nonlinear systems time-delay systems retarded functional differential equations stabilizing control

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Wireless,multimodal sensors for continuous measurement of pressure,temperature,and hydration of patients in wheelchair

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npj Flexible Electronics 2023年第1期7卷 479-493页

作者： Seokjoo Cho Hyeonseok Han Hyunwoo Park Sung-Uk Lee Jae-Hwan Kim Sung Woo Jeon Mengqiu Wang Raudel Avila Zhaoqian Xi Kabseok Ko Minsu Park Jungyup Lee Myungwoo Choi Je-Sang Lee Weon Gi Min Byeong-Ju Lee Soyeong Lee Jungrak Choi Jimin Gu Jaeho Park Min Seong Kim Junseong Ahn Osman Gul Chankyu Han Gihun Lee Seunghwan Kim Kyuyoung Kim Jeonghyun Kim Chang-Mo Kang Jahyun Koo Sung Soo Kwak Sungbong Kim Dong Yun Choi Seokwoo Jeon Hyung Jin Sung Yong Bae Park Minkyu Je Young Tae Cho Yong Suk Oh Inkyu Park Department of Mechanical Engineering Korea Advanced Institute of Science and TechnologyDaejeon 34141Republic of Korea School of Electrical Engineering Korea Advanced Institute of Science and TechnologyDaejeon 34141Republic of Korea Advanced 3D Printing Technology Development Division Korea Atomic Energy Research InstituteDaejeon 34057Republic of Korea Department of Electrical and Computer Engineering University of Illinois at Urbana-ChampaignUrbanaIL 61801USA State Key Laboratory of Structural Analysis for Industrial Equipment Department of Engineering MechanicsDalian University of TechnologyDalian 116023P.R.China Department of Mechanical Engineering Northwestern UniversityEvanstonIL 60208USA DUT-BSU Joint Institute Dalian University of TechnologyDalian 116023China Ningbo Institute of Dalian University of Technology Ningbo 315016China Department of Electronics Engineering Kangwon National UniversityChuncheon 24341Republic of Korea Querrey-Simpson Institute for Bioelectronics Northwestern UniversityEvanstonIL 60208USA Sibel Health Inc NilesIL 60714USA Department of Materials Science and Engineering KAIST Institute for The Nanocentury(KINC)Korea Advanced Institute of Science and TechnologyDaejeon 34141Republic of Korea Department of Rehabilitation Medicine Gimhae Hansol Rehabilitation&Convalescent HospitalGimhae 50924Republic of Korea Department of planning and development Gimhae Hansol Rehabilitation&Convalescent HospitalGimhae 50924Republic of Korea Department of rehabilitation medicine Pusan national university hospitalBusan 49241Republic of Korea Department of AI Convergence Network Ajou UniversitySuwon 16499Republic of Korea Department of Electronic Convergence Engineering Kwangwoon UniversitySeoul 01897Republic of Korea Korea Photonics Technology Institute Gwangju 61007Republic of Korea School of Biomedical Engineering Korea UniversitySeoul 02841Republic of Korea Interdisciplinary Program in Precision Public Health Korea UniversitySeoul 02841Republic of Korea Center

Individuals who are unable to walk independently spend most of the day in a *** population is at high risk for developing pressure injuries caused by ***,early diagnosis and prevention of these injuries still remain ***,we introduce battery-free,wireless,multimodal sensors and a movable system for continuous measurement of pressure,temperature,and hydration at skin *** device design includes a crack-activated pressure sensor with nanoscale encapsulations for enhanced sensitivity,a temperature sensor for measuring skin temperature,and a galvanic skin response sensor for measuring skin hydration *** movable system enables power harvesting,and data communication to multiple wireless devices mounted at skin-cushion interfaces of wheelchair users over full body *** evaluations and numerical simulations of the devices,together with clinical trials for wheelchair patients,demonstrate the feasibility and stability of the sensor system for preventing pressure injuries caused by sitting.

关键词： injuries modal mounted

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Integrated proteomic profiling identifies amino acids selectively cytotoxic to pancreatic cancer cells

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The Innovation 2024年第3期5卷 138-145页

作者： Alfred Akinlalu Zachariah Flaten Komila Rasuleva Md Saimon Mia Aaron Bauer Santhalingam Elamurugan Nega Ejjigu Sudipa Maity Amara Arshad Min Wu Wenjie Xia Jia Fan Ang Guo Sijo Mathew Dali Sun Department of Electrical and Computer Engineering University of Denver2155 E Wesley AvenueDenverCO 80210USA Biomedical Engineering Program North Dakota State University1401 Centennial BoulevardEngineering AdministrationRoom 203FargoND 58102USA Department of Pharmaceutical Sciences School of PharmacyNorth Dakota State University1001 S.1401 Albrecht Boulevard Sudro HallFargoND 58102USA Materials and Nanotechnology Program North Dakota State University1410 North 14th AvenueCIE 201FargoND 58102USA Wenzhou Institute University of Chinese Academy of SciencesWenzhouZhejiang 325000China Department of Aerospace Engineering Iowa State UniversityAmesIA 50011USA Center for Cellular and Molecular Diagnostics Tulane University School of Medicine1430 Tulane AvenueNew OrleansLA 70112USA Department of Biochemistry and Molecular Biology Tulane University School of Medicine1430 Tulane AvenueNew OrleansLA 70112USA Knoebel Institute for Healthy Aging University of Denver2155 E Wesley AvenueDenverCO 80210USA

Pancreatic adenocarcinoma(PDAC)is one of the most deadly cancers,characterized by extremely limited therapeutic options and a poor prognosis,as it is often diagnosed during late disease *** and selective treatments are urgently needed,since current therapies have limited efficacy and significant side *** proteomics analysis of extracellular vesicles,we discovered an imbalanced distribution of amino acids secreted by PDAC tumor *** findings revealed that PDAC cells preferentially excrete proteins with certain preferential amino acids,including isoleucine and histidine,via extracellular *** amino acids are associated with disease progression and can be targeted to elicit selective toxicity to PDAC tumor *** in vitro and in vivo experiments demonstrated that supplementation with these specific amino acids effectively eradicated PDAC ***,we also identified XRN1 as a potential target for these amino *** high selectivity of this treatment method allows for specific targeting of tumor metabolism with very low toxicity to normal ***,we found this treatment approach is easy-to-administer and with sustained tumor-killing ***,our findings reveal that exocytosed amino acids may serve as therapeutic targets for designing treatments of intractable PDAC and potentially offer alternative treatments for other types of cancers.

关键词： finding identif selectivity

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Manhattan Nonnegative matrix factorization using the alternating direction method of multipliers

Manhattan Nonnegative matrix factorization using the alterna...

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International Workshop on Advanced Computational Intelligence (IWACI)

作者： Chan Cao Shuyu Tang Nian Zhang Xiangguang Dai Wei Zhang Yuming Feng Jiang Xiong Jinkui Liu Lara Thompson Chongqing Three Gorges University Wanzhou China Department of Electrical and Computer Engineering University of the District of Columbia Washington D.C. USA Department of Mechanical Engineering Biomedical Engineering Program University of the District of Columbia Washington D.C. USA

Nonnegative matrix factorization (NMF) was a classic model for dimensional reduction. Manhattan NMF is a variant version of NMF that uses a L 1 -norm cost function as the objective function instead of the L 2 -norm cost function. Manhattan NMF can be formulated as a nonconvex nonsmooth optimization problem. An algorithm framework for solving the Manhattan NMF problem based on the alternating direction method of multiplication is presented to us. Compared with the existed algorithm, our proposed algorithm is more effective by experiments on synthetic and real data sets.

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Accelerated Dynamic Magnetic Resonance Imaging from Spatial-Subspace Reconstructions (SPARS)

arXiv

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arXiv 2023年

作者： Mertens, Alexander J. Cheng, Hai-Ling Margaret The Edward S. Rogers Sr. Department of Electrical and Computer Engineering University of Toronto Canada Ted Rogers Centre for Heart Research Translational Biology & Engineering Program Toronto Canada Institute of Biomedical Engineering University of Toronto Canada

Dynamic contrast-enhanced (DCE) magnetic resonance imaging (MRI) ideally requires a high spatial and high temporal resolution, but hardware limitations prevent acquisitions from simultaneously achieving both. Existing image reconstruction techniques can artificially create spatial resolution at a given temporal resolution by estimating data that is not acquired, but, ultimately, spatial details are sacrificed at very high acceleration rates. The purpose of this paper is to introduce the concept of spatial subspace reconstructions (SPARS) and demonstrate its ability to reconstruct high spatial resolution dynamic images from as few as one acquired radial spoke per dynamic frame. Briefly, a low-temporal-high-spatial resolution organization of the acquired raw data is used to estimate a spatial subspace in which the high-temporal-high-spatial ground truth data resides. This subspace is then used to estimate entire images from single k-space spokes. In both simulated and human in-vivo data, the proposed SPARS reconstruction method outperformed standard GRASP and GRASP-Pro reconstruction, providing a shorter reconstruction time and yielding higher accuracy from both a spatial and temporal perspective. © 2023, CC BY.

关键词： Image reconstruction

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High Spatial Resolution Terahertz Time-Domain Imaging of Murine Pancreatic Ductal Adenocarcinoma Tissues

High Spatial Resolution Terahertz Time-Domain Imaging of Mur...

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2023 Conference on Lasers and Electro-Optics, CLEO 2023

作者： Chakraborty, Debamitra Mills, Bradley N. Cheng, Jing Komissarov, Ivan Gerber, Scott Sobolewski, Roman Materials Science Graduate Program University of Rochester RochesterNY14627-1299 United States Laboratory for Laser Energetics University of Rochester RochesterNY14623 United States Department of Surgery University of Rochester Medical Center RochesterNY14642 United States Department of Electrical and Computer Engineering University of Rochester RochesterNY14627-0231 United States

We developed a terahertz time-domain spectroscopy system to generate high-resolution 2-dimensional images of paraffin-embedded murine pancreatic ductal adenocarcinoma tissues using the refractive index and absorption ... 详细信息

ISBN: (纸本)9781957171258

关键词： Tissue

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