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International Conference on BioMedical engineering and Informatics (BMEI)

作者： Chi-Huang Chen Xiao-Ou Ping Zi-Jun Wang Sheau-Ling Hsieh Li-Chin Chen Yi-Ju Tseng Ching-Wei Hsu Feipei Lai Department of Electrical Engineering National Taiwan University Taipei Taiwan Graduate Institute of Computer Science and Information Engineering National Taiwan University Taipei Taiwan Graduate Institute of Biomedical Electronic and Bioinformatics National Taiwan University Taipei Taiwan EECS International Graduate Program Institute IT Center National Chiao Tung University Hsinchu Taiwan

The clinical data stored in the health information system can be categorized as two types including structuralized data and non-structuralized ones. In the paper, a data extraction system is developed to assist data retrieval from the non-structuralized textual clinical documents such as radiology reports, pathology reports, etc. The system provides keyword-based and semantic-driven data matching methodology to extract the specific information from the textual clinical documents. The matching methodology provides the capabilities to recognize the selected keywords and the related semantics in the documents. Through the extraction verification interface, clinicians can extract and verify the matched information semi-automatically. The extracted data can be filled into predefined case-oriented templates. The structuralized data can be stored back into the clinical data warehouse for further analyzing. Moreover, the case-oriented templates can support collecting corresponding extracted data for various researches.

关键词： Data mining Semantics Pattern matching Tumors Radiology Pathology Cancer

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Technology Roadmap for Flexible Sensors

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ACS NANO 2023年第6期17卷 5211-5295页

作者： Luo, Yifei Abidian, Mohammad Reza Ahn, Jong-Hyun Akinwande, Deji Andrews, Anne M. Antonietti, Markus Bao, Zhenan Berggren, Magnus Berkey, Christopher A. Bettinger, Christopher John Chen, Jun Chen, Peng Cheng, Wenlong Cheng, Xu Choi, Seon-Jin Chortos, Alex Dagdeviren, Canan Dauskardt, Reinhold H. Di, Chong-an Dickey, Michael D. Duan, Xiangfeng Facchetti, Antonio Fan, Zhiyong Fang, Yin Feng, Jianyou Feng, Xue Gao, Huajian Gao, Wei Gong, Xiwen Guo, Chuan Fei Guo, Xiaojun Hartel, Martin C. He, Zihan Ho, John S. Hu, Youfan Huang, Qiyao Huang, Yu Huo, Fengwei Hussain, Muhammad M. Javey, Ali Jeong, Unyong Jiang, Chen Jiang, Xingyu Kang, Jiheong Karnaushenko, Daniil Khademhosseini, Ali Kim, Dae-Hyeong Kim, Il-Doo Kireev, Dmitry Kong, Lingxuan Lee, Chengkuo Lee, Nae-Eung Lee, Pooi See Lee, Tae-Woo Li, Fengyu Li, Jinxing Liang, Cuiyuan Lim, Chwee Teck Lin, Yuanjing Lipomi, Darren J. Liu, Jia Liu, Kai Liu, Nan Liu, Ren Liu, Yuxin Liu, Yuxuan Liu, Zhiyuan Liu, Zhuangjian Loh, Xian Jun Lu, Nanshu Lv, Zhisheng Magdassi, Shlomo Malliaras, George G. Matsuhisa, Naoji Nathan, Arokia Niu, Simiao Pan, Jieming Pang, Changhyun Pei, Qibing Peng, Huisheng Qi, Dianpeng Ren, Huaying Rogers, John A. Rowe, Aaron Schmidt, Oliver G. Sekitani, Tsuyoshi Seo, Dae-Gyo Shen, Guozhen Sheng, Xing Shi, Qiongfeng Someya, Takao Song, Yanlin Stavrinidou, Eleni Su, Meng Sun, Xuemei Takei, Kuniharu Tao, Xiao-Ming Tee, Benjamin C. K. Thean, Aaron Voon-Yew Trung, Tran Quang Wan, Changjin Wang, Huiliang Wang, Joseph Wang, Ming Wang, Sihong Wang, Ting Wang, Zhong Lin Weiss, Paul S. Wen, Hanqi Xu, Sheng Xu, Tailin Yan, Hongping Yan, Xuzhou Yang, Hui Yang, Le Yang, Shuaijian Yin, Lan Yu, Cunjiang Yu, Guihua Yu, Jing Yu, Shu-Hong Yu, Xinge Zamburg, Evgeny Zhang, Haixia Zhang, Xiangyu Zhang, Xiaosheng Zhang, Xueji Zhang, Yihui Zhang, Yu Zhao, Siyuan Zhao, Xuanhe Zheng, Yuanjin Zheng, Yu-Qing Zheng, Zijian Zhou, Tao Zhu, Bowen Zhu, Ming Zhu, Rong Zhu, Yangzhi Zhu, Yong Zou, Guijin Chen, Xiaodong 08-03 Innovis Singapore 138634 Republic of Singapore Innovative Centre for Flexible Devices (iFLEX) School of Materials Science and Engineering Nanyang Technological University Singapore 639798 Singapore Department of Biomedical Engineering University of Houston Houston Texas 77024 United States School of Electrical and Electronic Engineering Yonsei University Seoul 03722 Republic of Korea Department of Electrical and Computer Engineering The University of Texas at Austin Austin Texas 78712 United States Microelectronics Research Center The University of Texas at Austin Austin Texas 78758 United States Department of Chemistry and Biochemistry California NanoSystems Institute and Department of Psychiatry and Biobehavioral Sciences Semel Institute for Neuroscience and Human Behavior and Hatos Center for Neuropharmacology University of California Los Angeles Los Angeles California 90095 United States Colloid Chemistry Department Max Planck Institute of Colloids and Interfaces 14476 Potsdam Germany Department of Chemical Engineering Stanford University Stanford California 94305 United States Laboratory of Organic Electronics Department of Science and Technology Campus Norrköping Linköping University 83 Linköping Sweden Wallenberg Initiative Materials Science for Sustainability (WISE) and Wallenberg Wood Science Center (WWSC) SE-100 44 Stockholm Sweden Department of Materials Science and Engineering Stanford University Stanford California 94301 United States Department of Biomedical Engineering and Department of Materials Science and Engineering Carnegie Mellon University Pittsburgh Pennsylvania 15213 United States Department of Bioengineering University of California Los Angeles Los Angeles California 90095 United States School of Chemistry Chemical Engineering and Biotechnology Nanyang Technological University Singapore 637457 Singapore Nanobionics Group Department of Chemical and Biological Engineering Monash University Clayton Australia 3800 Monash

Humans rely increasingly on sensors to address grand challenges and to improve quality of life in the era of digitalization and big data. For ubiquitous sensing, flexible sensors are developed to overcome the limitations of conventional rigid counterparts. Despite rapid advancement in bench-side research over the last decade, the market adoption of flexible sensors remains limited. To ease and to expedite their deployment, here, we identify bottlenecks hindering the maturation of flexible sensors and propose promising solutions. We first analyze continued...challenges in achieving satisfactory sensing performance for real-world applications and then summarize issues in compatible sensor-biology interfaces, followed by brief discussions on powering and connecting sensor networks. Issues en route to commercialization and for sustainable growth of the sector are also analyzed, highlighting environmental concerns and emphasizing nontechnical issues such as business, regulatory, and ethical considerations. Additionally, we look at future intelligent flexible sensors. In proposing a comprehensive roadmap, we hope to steer research efforts towards common goals and to guide coordinated development strategies from disparate communities. Through such collaborative

关键词： soft materials mechanics engineering flexible electronics conformable sensors bioelectronics human-machine interfaces body area sensor networks technology translation sustainable electronics

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Phylogeographic and genetic network assessment of COVID-19 mitigation protocols on SARS-CoV-2 transmission in university campus residences

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EBioMedicine 2025年 116卷 105729页

作者： Joel O Wertheim Tetyana I Vasylyeva Robert J Wood Kalen Cantrell Soraya Piña Contreras Aryeh Feldheim Ravi Goyal Jennifer L Havens Rob Knight Louise C Laurent Niema Moshiri Robert Neuhard Shashank Sathe Alysson Satterlund Angela Scioscia Angela Y Song Robert T Schooley Cheryl M Anderson Natasha K Martin Department of Medicine University of California San Diego La Jolla CA USA. Electronic address: jwertheim@health.ucsd.edu. Department of Medicine University of California San Diego La Jolla CA USA Department of Population Health and Disease Prevention University of California Irvine Irvine CA USA. Herbert Wertheim School of Public Health and Human Longevity Science University of California San Diego La Jolla CA USA. Department of Computer Science & Engineering University of California San Diego La Jolla CA USA. Department of Medicine University of California San Diego La Jolla CA USA. Bioinformatics and Systems Biology Graduate Program University of California San Diego La Jolla CA USA. Department of Pediatrics University of California San Diego La Jolla CA USA Department of Bioengineering University of California San Diego La Jolla CA USA Department of Computer Science and Engineering University of California San Diego La Jolla CA USA Center for Microbiome Innovation University of California San Diego La Jolla CA USA Halıcıoğlu Data Science Institute University of California San Diego La Jolla CA USA. Sanford Consortium of Regenerative Medicine University of California San Diego La Jolla CA USA University of California San Diego La Jolla CA USA. Department of Obstetrics Gynecology and Reproductive Sciences University of California San Diego La Jolla CA USA.

BACKGROUND:Congregate living provides an ideal setting for SARS-CoV-2 transmission in which many outbreaks and superspreading events occurred. To avoid large outbreaks, universities turned to remote operations during the initial COVID-19 pandemic waves in 2020 and 2021. In late-2021, the University of California San Diego (UC San Diego) facilitated the return of students to campus with comprehensive testing, vaccination, masking, wastewater surveillance, and isolation policies. METHODS:We performed molecular epidemiological and phylogeographic analysis of 4418 SARS-CoV-2 genomes sampled from UC San Diego students during the Omicron waves between December 2021 and September 2022, representing 58% of students with confirmed SARS-CoV-2 infection. We overlaid these analyses across on-campus residential information to assess the spread and persistence of SARS-CoV-2 within university residences. FINDINGS:Within campus residences, SARS-CoV-2 transmission was frequent among students residing in the same room or suite. However, a quarter of pairs of suitemates with concurrent infections had distantly related viruses, suggesting separate sources of infection during periods of high incidence in the surrounding community. Students with concurrent infections residing in the same building were not at substantial increased probability of being members of the same transmission cluster. Genetic network and phylogeographic inference indicated that only between 3.1 and 12.4% of infections among students could be associated with transmission within buildings outside of individual suites. The only super-spreading event we detected was related to a large event outside campus residences. INTERPRETATION:We found little evidence for sustained SARS-CoV-2 transmission within individual buildings, aside from students who resided in the same suite. Even in the face of heightened community transmission during the 2021-2022 Omicron waves, congregate living did not result in a heightened risk for

关键词： Mitigation Phylogeography SARS-CoV-2 Transmission cluster University

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Time Series Mining Approach for Noninvasive Intracranial Pressure Assessment: An Investigation of Different Regularization Techniques

Time Series Mining Approach for Noninvasive Intracranial Pre...

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computer science and Information engineering, CSIE, WRI World Congress on FLAGGED

作者： Shaozhi Wu Peng Xu Shadnaz Asgari Marvin Bergsneider Xiao Hu Biomedical Engineering Graduate Program Henry Samueli School of Engineering and Applied Science University of California Los Angeles USA Neural Systems and Dynamics Laboratory Department of Neurosurgery the David Geffen School of Medicine University of California Los Angeles USA School of Computer Science and Engineering University of Electronic Science and Technology Chengdu China

A data mining framework has been proposed to estimate intracranial pressure (ICP) non-invasively in our previous work. In the corresponding approach, the feature vector extracted from arterial blood pressure (ABP) and flow velocity (FV) is translated to the estimated errors by the mapping function for each entry in the database. In this paper, three different mapping function solutions, linear least squares (LLS), truncated singular value decomposition (TSVD) and standard Tikhonov regularization (STR) are systemically tested to compare the possible effects of different solutions on the non-invasive ICP estimation. The conducted comparison demonstrated that the selection of mapping function solution actually influences the estimation. Among the tested three solutions for mapping function, TSVD and STR show better ICP estimation performance with smaller ICP errors than LLS.

关键词： Cranial pressure Data mining Biomedical engineering Data engineering Spatial databases computer science Feature extraction Arterial blood pressure Biomedical measurements Laboratories

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Multiscale Numerical Modeling for Near-Field Microwave Impedance Microscopy

Multiscale Numerical Modeling for Near-Field Microwave Imped...

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Conference on Lasers and Electro-Optics (CLEO)

作者： Diego Tami Douglas A. A. Ohlberg Jhonattan C. Ramirez Cássio Gonçalves Do Rego Gilberto Medeiros-Ribeiro Graduate Program in Electrical Engineering Universidade Federal de Minas Gerais Brazil Microscopy Center Universidade Federal de Minas Gerais Brazil Department of Electronic Engineering Universidade Federal de Minas Gerais Brazil Computer Science Department Universidade Federal de Minas Gerais Brazil

In this work, we analyzed numerically a multiscale nanosystem based on sMIM on TBG. Spontaneous formation of a water-meniscus by the approximation between the tip-sample concentrates the microwave fields, reaching res... 详细信息

ISBN: (数字)9781957171050

ISBN: (纸本)9781665466660

关键词： Microscopy Masers Lasers and electrooptics Laser modes Numerical models Impedance Electrooptical waveguides

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Vision-based Semantic Communications for Metaverse Services: A Contest Theoretic Approach

Vision-based Semantic Communications for Metaverse Services:...

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IEEE Conference on Global Communications (GLOBECOM)

作者： Guangyuan Liu Hongyang Du Dusit Niyato Jiawen Kang Zehui Xiong Boon Hee Soong Energy Research Institute@NTU Interdisciplinary Graduate Program School of Computer Science and Engineering Nanyang Technological University Singapore School of Computer Science and Engineering Nanyang Technological University Singapore School of Automation Guangdong University of Technology China Pillar of Information Systems Technology and Design Singapore University of Technology and Design Singapore Department of Electrical and Electronic Engineering Nanyang Technological University Singapore

The popularity of Metaverse as an entertainment, social, and work platform has led to a great need for seamless avatar integration in the virtual world. In Metaverse, avatars must be updated and rendered to reflect users' behaviour. Achieving real-time synchronization between the virtual bilocation and the user is complex, placing high demands on the Metaverse Service Provider (MSP)'s rendering resource allocation scheme. To tackle this issue, we propose a semantic communication framework that leverages contest theory to model the interactions between users and MSPs and determine optimal resource allocation for each user. To reduce the consumption of network resources in wireless transmission, we use the semantic communication technique to reduce the amount of data to be transmitted. Under our simulation settings, the encoded semantic data only contains 51 bytes of skeleton coordinates instead of the image size of 8.243 megabytes. Moreover, we implement Deep Q-Network to optimize reward settings for maximum performance and efficient resource allocation. With the optimal reward setting, users are incentivized to select their respective suitable uploading frequency, reducing down-sampling loss due to rendering resource constraints by 66.076% compared with the traditional average distribution method. The framework provides a novel solution to resource allocation for avatar association in VR environments, ensuring a smooth and immersive experience for all users.

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A Multi-phase Deep Learning Approach for Predicting HCC Response to TACE using Complete Computed Tomography

A Multi-phase Deep Learning Approach for Predicting HCC Resp...

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Data science and engineering in Healthcare, Medicine and Biology, IEEE EMBS Special Topic Conference on

作者： Shun Cheng Chang Chien Fu Liu Marta Misztal Yi Hsien Hsieh Che Lin Graduate Institute of Communication Engineering National Taiwan University (NTU) Taiwan School of Electronic Engineering and Computer Science Queen Mary University of London UK Department of Electrical Engineering NTU Taiwan Center for Computational and Systems Biology and Center for Biotechnology NTU Taiwan Smart Medicine and Health Informatics Program NTU Taiwan

In this research study, we compare the predictive performance of two advanced deep learning-based models in order to provide a solution to TACE (Transarterial Chemoembolization) response prediction in HCC (Hepatocellular Carcinoma) patients. Using entire abdominal CT scans enabled a broader perspective available for the model, eliminating the need for segmentation during the preprocessing. Making use of both single-phase and multi-phase CT imaging, we have used DenseNet121 and have obtained an accuracy of 80% for the multi-phase *** Relevance: The ability to predict the effectiveness of TACE treatment prior to its administration makes it possible to provide a better decision-making aid for physicians and patients.

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LaPE: Layer-adaptive position Embedding for Vision Transformers with Independent Layer Normalization

LaPE: Layer-adaptive Position Embedding for Vision Transform...

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International Conference on computer Vision (ICCV)

作者： Runyi Yu Zhennan Wang Yinhuai Wang Kehan Li Chang Liu Haoyi Duan Xiangyang Ji Jie Chen School of Electronic and Computer Engineering Peking University Shenzhen China AI for Science (AI4S)-Preferred Program Peking University Shenzhen Graduate School China Peng Cheng Laboratory Shenzhen China Department of Automation and BNRist Tsinghua University Beijing China School of Computer Science and Technology Zhejiang University Zhejiang China

position information is critical for Vision Transformers (VTs) due to the permutation-invariance of self-attention operations. A typical way to introduce position information is adding the absolute position Embedding (PE) to patch embedding before entering VTs. However, this approach operates the same Layer Normalization (LN) to token embedding and PE, and delivers the same PE to each layer. This results in restricted and monotonic PE across layers, as the shared LN affine parameters are not dedicated to PE, and the PE cannot be adjusted on a per-layer basis. To overcome these limitations, we propose using two independent LNs for token embeddings and PE in each layer, and progressively delivering PE across layers. By implementing this approach, VTs will receive layer-adaptive and hierarchical PE. We name our method as Layer-adaptive position Embedding, abbreviated as LaPE, which is simple, effective, and robust. Extensive experiments on image classification, object detection, and semantic segmentation demonstrate that LaPE significantly outperforms the default PE method. For example, LaPE improves +1.06% for CCT on CIFAR100, +1.57% for DeiT-Ti on ImageNet-1K, +0.7 box AP and +0.5 mask AP for ViT-Adapter-Ti on COCO, and +1.37 mIoU for tiny Segmenter on ADE20K. This is remarkable considering LaPE only increases negligible parameters, memory, and computational cost.

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Fuzzy positive Learning for Semi-Supervised Semantic Segmentation

Fuzzy Positive Learning for Semi-Supervised Semantic Segment...

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Conference on computer Vision and Pattern Recognition (CVPR)

作者： Pengchong Qiao Zhidan Wei Yu Wang Zhennan Wang Guoli Song Fan Xu Xiangyang Ji Chang Liu Jie Chen School of Electronic and Computer Engineering Peking University Shenzhen China Peng Cheng Laboratory Shenzhen China AI for Science (AI4S)-Preferred Program Peking University Shenzhen Graduate School China Department of Automation and BNRist Tsinghua University Beijing China

Semi-supervised learning (SSL) essentially pursues class boundary exploration with less dependence on human annotations. Although typical attempts focus on ameliorating the inevitable error-prone pseudo-labeling, we think differently and resort to exhausting informative semantics from multiple probably correct candidate labels. In this paper, we introduce Fuzzy positive Learning (FPL) for accurate SSL semantic segmentation in a plug-and-play fashion, targeting adaptively encouraging fuzzy positive predictions and suppressing highly-probable negatives. Being conceptually simple yet practically effective, FPL can remarkably alleviate interference from wrong pseudo labels and progressively achieve clear pixel-level semantic discrimination. Concretely, our FPL approach consists of two main components, including fuzzy positive assignment (FPA) to provide an adaptive number of labels for each pixel and fuzzy positive regularization (FPR) to restrict the predictions of fuzzy positive categories to be larger than the rest under different perturbations. Theoretical analysis and extensive experiments on Cityscapes and VOC 2012 with consistent performance gain justify the superiority of our approach. Codes are provided in https://***/qpc1611094/FPL.

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Out-of-Distributed Semantic Pruning for Robust Semi-Supervised Learning

Out-of-Distributed Semantic Pruning for Robust Semi-Supervis...

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Conference on computer Vision and Pattern Recognition (CVPR)

作者： Yu Wang Pengchong Qiao Chang Liu Guoli Song Xiawu Zheng Jie Chen School of Electronic and Computer Engineering Peking University Shenzhen China AI for Science(AI4S)-Preferred Program Peking University Shenzhen Graduate School China Peng Cheng Laboratory Shenzhen China Department of Automation and BNRist Tsinghua University Beijing China

Recent advances in robust semi-supervised learning (SSL) typically filter out-of-distribution (OOD) information at the sample level. We argue that an overlooked problem of robust SSL is its corrupted information on semantic level, practically limiting the development of the field. In this paper, we take an initial step to explore and propose a unified framework termed OOD Semantic Pruning (OSP), which aims at pruning OOD semantics out from in-distribution (ID) features. Specifically, (i) we propose an aliasing OOD matching module to pair each ID sample with an OOD sample with semantic overlap. (ii) We design a soft orthogonality regularization, which first transforms each ID feature by suppressing its semantic component that is collinear with paired OOD sample. It then forces the predictions before and after soft orthogonality decomposition to be consistent. Being practically simple, our method shows a strong performance in OOD detection and ID classification on challenging benchmarks. In particular, OSP surpasses the previous state-of-the-art by 13.7% on accuracy for ID classification and 5.9% on AUROC for OOD detection on TinyImageNet dataset. The source codes are publicly available at https://***/rain305f/OSP.

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