A description of the so called "particles with coupled oscillator dynamics" (PCOD) is presented which is used to model, analyze and synthesize collective motion. An oscillator model with spatial dynamics is ...
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A description of the so called "particles with coupled oscillator dynamics" (PCOD) is presented which is used to model, analyze and synthesize collective motion. An oscillator model with spatial dynamics is presented to help describe how to design steering control laws while it is being used to study biological collectives. Lastly, both engineering and biological analysis were described.
Boundary conditions for molecular dynamics simulation of crystalline solids are considered with the objective of eliminating the reflection of phonons.A variational formalism is presented to construct boundary conditi...
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Boundary conditions for molecular dynamics simulation of crystalline solids are considered with the objective of eliminating the reflection of phonons.A variational formalism is presented to construct boundary conditions that minimize total phonon *** boundary conditions that involve a few neighbors of the boundary atoms and limited number of time steps are found using the variational *** effects are studied and compared with other boundary conditions such as truncated exact boundary conditions or by appending border atoms where artificial damping forces are *** general it is found that,with the same cost or complexity,the variational boundary conditions perform much better than the truncated exact boundary conditions or by appending border atoms with empirical damping *** issues of implementation are discussed for real *** to brittle fracture dynamics is illustrated.
For the iterative solution of saddle point problems, a nonsymmetric preconditioner is studied which, with respect to the upper-left block of the system matrix, can be seen as a variant of SSOR. An idealized situation ...
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The second-order Sigma-Delta (ΣΔ) scheme with linear quantization rule is analyzed for quantizing finite unit-norm tight frame expansions for Rd. Approximation error estimates are derived, and it is shown that for c...
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We present an equation-free computational approach to the study of the coarse-grained dynamics of finite assemblies of nonidentical coupled oscillators at and near full synchronization. We use coarse-grained observabl...
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We present an equation-free computational approach to the study of the coarse-grained dynamics of finite assemblies of nonidentical coupled oscillators at and near full synchronization. We use coarse-grained observables which account for the (rapidly developing) correlations between phase angles and natural frequencies. Exploiting short bursts of appropriately initialized detailed simulations, we circumvent the derivation of closures for the long-term dynamics of the assembly statistics.
Using a coarse molecular-dynamics (CMD) approach with an appropriate choice of coarse variable (order parameter), we map the underlying effective free-energy landscape for the melting of a crystalline solid. Implement...
Using a coarse molecular-dynamics (CMD) approach with an appropriate choice of coarse variable (order parameter), we map the underlying effective free-energy landscape for the melting of a crystalline solid. Implementation of this approach provides a means for constructing effective free-energy landscapes of structural transitions in condensed matter. The predictions of the approach for the thermodynamic melting point of a model silicon system are in excellent agreement with those of “traditional” techniques for melting-point calculations, as well as with literature values.
We formulate statistical-mechanical inverse methods in order to determine optimized interparticle interactions that spontaneously produce target many-particle configurations. Motivated by advances that give experiment...
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We formulate statistical-mechanical inverse methods in order to determine optimized interparticle interactions that spontaneously produce target many-particle configurations. Motivated by advances that give experimentalists greater and greater control over colloidal interaction potentials, we propose and discuss two computational algorithms that search for optimal potentials for self-assembly of a given target configuration. The first optimizes the potential near the ground state and the second near the melting point. We begin by applying these techniques to assembling open structures in two dimensions (square and honeycomb lattices) using only circularly symmetric pair interaction potentials; we demonstrate that the algorithms do indeed cause self-assembly of the target lattice. Our approach is distinguished from previous work in that we consider (i) lattice sums, (ii) mechanical stability (phonon spectra), and (iii) annealed Monte Carlo simulations. We also devise circularly symmetric potentials that yield chainlike structures as well as systems of clusters.
Previous Monte Carlo investigations by Wojciechowski et al. have found two unusual phases in two-dimensional systems of anisotropic hard particles: a tetratic phase of fourfold symmetry for hard squares [Comput. Meth...
Previous Monte Carlo investigations by Wojciechowski et al. have found two unusual phases in two-dimensional systems of anisotropic hard particles: a tetratic phase of fourfold symmetry for hard squares [Comput. Methods Sci. Tech. 10, 235 (2004)], and a nonperiodic degenerate solid phase for hard-disk dimers [Phys. Rev. Lett. 66, 3168 (1991)]. In this work, we study a system of hard rectangles of aspect ratio two, i.e., hard-square dimers (or dominos), and demonstrate that it exhibits phases with both of these unusual properties. The liquid shows quasi-long-range tetratic order, with no nematic order. The solid phase we observe is a nonperiodic tetratic phase having the structure of a random tiling of the square lattice with dominos with the well-known degeneracy entropy 1.79kB per particle. Our simulations do not conclusively establish the thermodynamic stability of this orientationally disordered solid; however, there are strong indications that this phase is glassy. Our observations are consistent with a two-stage phase transition scenario developed by Kosterlitz and co-workers with two continuous phase transitions, the first from isotropic to tetratic liquid, and the second from tetratic liquid to solid. We obtain similar results with both a classical Monte Carlo method using true rectangles and a novel molecular dynamics algorithm employing rectangles with rounded corners.
We demonstrate that there is no ideal glass transition in a binary hard-disk mixture by explicitly constructing an exponential number of jammed packings with densities spanning the spectrum from the accepted amorphous...
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We demonstrate that there is no ideal glass transition in a binary hard-disk mixture by explicitly constructing an exponential number of jammed packings with densities spanning the spectrum from the accepted amorphous glassy state to the phase-separated crystal. Thus the configurational entropy cannot be zero for an ideal amorphous glass, presumed distinct from the crystal in numerous theoretical and numerical estimates in the literature. This objection parallels our previous critique of the idea that there is a most-dense random (close) packing for hard spheres [Torquato et al., Phys. Rev. Lett. 84, 2064 (2000)].
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