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2018 systems and information engineering Design Symposium, SIEDS 2018

作者： Roy, Abhimanyu Sun, Jingyi Mahoney, Robert Alonzi, Loreto Adams, Stephen Beling, Peter Data Science Institute University of Virginia United States Library and Data Science Institute University of Virginia United States Systems and Information Engineering University of Virginia United States Department of Systems and Information Engineering University of Virginia United States

ISBN: (纸本)9781538663431

Credit card fraud resulted in the loss of $3 billion to North American financial institutions in 2017. The rise of digital payments systems such as Apple Pay, Android Pay, and Venmo has meant that loss due to fraudulent activity is expected to increase. Deep Learning presents a promising solution to the problem of credit card fraud detection by enabling institutions to make optimal use of their historic customer data as well as real-time transaction details that are recorded at the time of the transaction. In 2017, a study found that a Deep Learning approach provided comparable results to prevailing fraud detection methods such as Gradient Boosted Trees and Logistic Regression. However, Deep Learning encompasses a number of topologies. Additionally, the various parameters used to construct the model (e.g. the number of neurons in the hidden layer of a neural network) also influence its results. In this paper, we evaluate a subsection of Deep Learning topologies - from the general artificial neural network to topologies with built-in time and memory components such as Long Short-term memory - and different parameters with regard to their efficacy in fraud detection on a dataset of nearly 80 million credit card transactions that have been pre-labeled as fraudulent and legitimate. We utilize a high performance, distributed cloud computing environment to navigate past common fraud detection problems such as class imbalance and scalability. Our analysis provides a comprehensive guide to sensitivity analysis of model parameters with regard to performance in fraud detection. We also present a framework for parameter tuning of Deep Learning topologies for credit card fraud detection to enable financial institutions to reduce losses by preventing fraudulent activity. © 2018 IEEE.

关键词： Topology

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Applying the FAIR Principles to computational workflows

arXiv

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arXiv 2024年

作者： Wilkinson, Sean R. Aloqalaa, Meznah Belhajjame, Khalid Crusoe, Michael R. de Paula Kinoshita, Bruno Gadelha, Luiz Garijo, Daniel Ragnar Gustafsson, Ove Johan Juty, Nick Kanwal, Sehrish Khan, Farah Zaib Köster, Johannes Gehlen, Karsten Petersvon Pouchard, Line Rannow, Randy K. Soiland-Reyes, Stian Soranzo, Nicola Sufi, Shoaib Sun, Ziheng Vilne, Baiba Wouters, Merridee A. Yuen, Denis Goble, Carole Oak Ridge Leadership Computing Facility Oak Ridge National Laboratory Oak RidgeTN United States Department of Computer Science University of Manchester Manchester United Kingdom LAMSADE PSL Paris Dauphine University Paris France Berlin Germany Earth Sciences Barcelona Supercomputing Center Barcelona Spain Heidelberg Germany Ontology Engineering Group Universidad Politécnica de Madrid Madrid Spain Australian BioCommons University of Melbourne MelbourneVIC Australia ParkvilleVIC Australia University Medicine Essen University of Duisburg-Essen Essen Germany Data Management Department Deutsches Klimarechenzentrum GmbH Hamburg Germany Center for Computing Research Sandia National Laboratories AlbuquerqueNM United States Silverdraft Supercomputing BoiseID United States Informatics Institute University of Amsterdam Amsterdam Netherlands Earlham Institute Norwich United Kingdom Center for Spatial Information Science and Systems Department of Geography and Geoinformation Science George Mason University FairfaxVA United States Bioinformatics Group Riga Stradins University Riga Latvia School of Clinical Medicine University of New South Wales KensingtonNSW Australia Ontario Institute for Cancer Research TorontoON Canada

Recent trends within computational and data sciences show an increasing recognition and adoption of computational workflows as tools for productivity and reproducibility that also democratize access to platforms and processing know-how. As digital objects to be shared, discovered, and reused, computational workflows benefit from the FAIR principles, which stand for Findable, Accessible, Interoperable, and Reusable. The Workflows Community Initiative’s FAIR Workflows Working Group (WCI-FW), a global and open community of researchers and developers working with computational workflows across disciplines and domains, has systematically addressed the application of both FAIR data and software principles to computational workflows. We present recommendations with commentary that reflects our discussions and justifies our choices and adaptations. These are offered to workflow users and authors, workflow management system developers, and providers of workflow services as guidelines for adoption and fodder for discussion. The FAIR recommendations for workflows that we propose in this paper will maximize their value as research assets and facilitate their adoption by the wider community. © 2024, CC BY.

关键词： Application programs

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Deep learning based segmentation of various brain lesions for radiosurgery

arXiv

引用

arXiv 2020年

作者： Wu, Siang-Ruei Chang, Hao-Yun Su, Florence T. Liao, Heng-Chun Tseng, Wanju Liao, Chun-Chih Lai, Feipei Hsu, Feng-Ming Xiao, Furen Department of Electrical Engineering National Taiwan University College of Arts and Sciences Santa Clara University School of Medicine National Taiwan University Taiwan Data Intelligence and Application Division QNAP Systems Inc Department of Neurosurgery Taipei Hospital Department of Computer Science and Information Engineering National Taiwan University Taiwan Department of Oncology National Taiwan University Hospital Taiwan Department of Neurosurgery National Taiwan University Hospital Taiwan

Semantic segmentation of medical images with deep learning models is rapidly developed. In this study, we benchmarked state-of-the-art deep learning segmentation algorithms on our clinical stereotactic radiosurgery dataset, demonstrating the strengths and weaknesses of these algorithms in a fairly practical scenario. In particular, we compared the model performances with respect to their sampling method, model architecture, and the choice of loss functions, identifying the suitable settings for their applications and shedding light on the possible improvements. Copyright © 2020, The Authors. All rights reserved.

关键词： Magnetic resonance imaging

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Better, Not Just More: data-Centric Machine Learning for Earth Observation

arXiv

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arXiv 2023年

作者： Roscher, Ribana Rußwurm, Marc Gevaert, Caroline Kampffmeyer, Michael dos Santos, Jefersson A. Vakalopoulou, Maria Hänsch, Ronny Hansen, Stine Nogueira, Keiller Prexl, Jonathan Tuia, Devis Data Science for Crop Systems Group Forschungszentrum Jülich GmbH Wilhelm-Johnen-Straße Jülich52428 Germany Remote Sensing Group University of Bonn Niebuhrstr. 1a Bonn53113 Germany Laboratory of Geo-information Science and Remote Sensing Wageningen University Droevendaalsesteeg 3 Wageningen Gelderland6708 PB Netherlands Department of Earth Observation Science Faculty ITC University of Twente Drienerlolaan 5 Enschede Overijssel7522 NB Netherlands Department of Physics and Technology UiT The Arctic University of Norway Klokkargårdsbakken 35 Tromsø9019 Norway Department of Computer Science University of Sheffield Sheffield City Centre 211 Portobello SheffieldS1 4DP United Kingdom Münchner Str. 20 Oberpfaffenhofen-Wessling82234 Germany Computing Science and Mathematics University of Stirling StirlingFK9 4LA United Kingdom Department of Aerospace Engineering University of the Bundeswehr Munich Werner-Heisenberg-Weg 39 Neubiberg Bavaria85579 Germany Ronquos 86 Sion1951 Switzerland

Recent developments and research in modern machine learning have led to substantial improvements in the geospatial field. Although numerous deep learning architectures and models have been proposed, the majority of them have been solely developed on benchmark datasets that lack strong real-world relevance. Furthermore, the performance of many methods has already saturated on these datasets. We argue that a shift from a model-centric view to a complementary data-centric perspective is necessary for further improvements in accuracy, generalization ability, and real impact on end-user applications. Furthermore, considering the entire machine learning cycle—from problem definition to model deployment with feedback—is crucial for enhancing machine learning models that can be reliable in unforeseen situations. This work presents a definition as well as a precise categorization and overview of automated data-centric learning approaches for geospatial data. It highlights the complementary role of data-centric learning with respect to model-centric in the larger machine learning deployment cycle. We review papers across the entire geospatial field and categorize them into different groups. A set of representative experiments shows concrete implementation examples. These examples provide concrete steps to act on geospatial data with data-centric machine learning approaches. © 2023, CC BY.

关键词： Deep learning

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CitationAS： A Tool of Automatic Survey Generation Based on Citation Content

引用

Journal of data and information Science 2018年第2期3卷 20-37页

作者： jie wang chengzhi zhang mengying zhang sanhong deng School of Information Management Nanjing University Nanjing 210023 China Department of Information Management Nanjing University of Science and Technology Nanjing 210094 China Jiangsu Key Laboratory of Data Engineering and Knowledge Service Nanjing University Nanjing 210023 China

Purpose： This study aims to build an automatic survey generation tool, named CitationAS, based on citation content as represented by the set of citing sentences in the original ***/methodology/approach： Firstly, we apply LDA to analyse topic distribution of citation content. Secondly, in CitationAS, we use bisecting K-means, Lingo and STC to cluster retrieved citation content. Then Word2Vec, Word Net and combination of them are applied to generate cluster labels. Next, we employ TF-IDF, MMR, as well as considering sentence location information, to extract important sentences, which are used to generate surveys. Finally, we adopt manual evaluation for the generated ***： In experiments, we choose 20 high-frequency phrases as search terms. Results show that Lingo-Word2Vec, STC-Word Net and bisecting K-means-Word2Vec have better clustering effects. In 5 points evaluation system, survey quality scores obtained by designing methods are close to 3, indicating surveys are within acceptable limits. When considering sentence location information, survey quality will be improved. Combination of Lingo, Word2Vec, TF-IDF or MMR can acquire higher survey *** limitations： The manual evaluation method may have a certain subjectivity. We use a simple linear function to combine Word2Vec and Word Net that may not bring out their strengths. The generated surveys may not contain some newly created knowledge of some articles which may concentrate on sentences with no *** implications： CitationAS tool can automatically generate a comprehensive, detailed and accurate survey according to user’s search terms. It can also help researchers learn about research status in a certain ***/value： Citaiton AS tool is of practicability. It merges cluster labels from semantic level to improve clustering results. The tool also considers sentence location information when calculating sentence score by TF-IDF and MMR.

关键词： Automatic survey system Citation content Clustering algorithms Labelgeneration approaches Sentence extraction methods

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Finding shortest and nearly shortest path nodes in large substantially incomplete networks

arXiv

引用

arXiv 2022年

作者： Kitsak, Maksim Ganin, Alexander Elmokashfi, Ahmed Cui, Hongzhu Eisenberg, Daniel A. Alderson, David L. Korkin, Dmitry Linkov, Igor Faculty of Electrical Engineering Mathematics and Computer Science Delft University of Technology Delft Netherlands Network Science Institute Northeastern University BostonMA02115 United States Department of Systems and Information Engineering University of Virginia CharlottesvilleVA22904 United States U.S. Army Engineer Research and Development Center Contractor Concord MA01742 United States Simula Metropolitan Center for Digital Engineering Oslo Norway Bioinformatics and Computational Biology Program Worcester Polytechnic Institute WorcesterMA01609 United States Institute for Genomic Medicine Columbia University Medical Center New YorkNY United States Operations Research Department Naval Postgraduate School MontereyCA93943 United States Data Science Program Worcester Polytechnic Institute WorcesterMA01609 United States Computer Science Department Worcester Polytechnic Institute WorcesterMA01609 United States U.S. Army Engineer Research and Development Center Environmental Laboratory Concord MA01742 United States

Dynamic processes on networks, be it information transfer in the Internet, contagious spreading in a social network, or neural signaling, take place along shortest or nearly shortest paths. Unfortunately, our maps of most large networks are substantially incomplete due to either the highly dynamic nature of networks, or high cost of network measurements, or both, rendering traditional path finding methods inefficient. We find that shortest paths in large real networks, such as the network of protein-protein interactions (PPI) and the Internet at the autonomous system (AS) level, are not random but are organized according to latent-geometric rules. If nodes of these networks are mapped to points in latent hyperbolic spaces, shortest paths in them align along geodesic curves connecting endpoint nodes. We find that this alignment is sufficiently strong to allow for the identification of shortest path nodes even in the case of substantially incomplete networks. We demonstrate the utility of latent-geometric path finding in problems of cellular pathway reconstruction and communication security. Copyright © 2022, The Authors. All rights reserved.

关键词： Proteins

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Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence

arXiv

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arXiv 2025年

作者： Sun, Yingying Jun, A. Liu, Zhiwei Sun, Rui Qian, Liujia Payne, Samuel H. Bittremieux, Wout Ralser, Markus Li, Chen Chen, Yi Dong, Zhen Perez-Riverol, Yasset Khan, Asif Sander, Chris Aebersold, Ruedi Vizcaíno, Juan Antonio Krieger, Jonathan R. Yao, Jianhua Wen, Han Zhang, Linfeng Zhu, Yunping Xuan, Yue Sun, Benjamin Boyang Qiao, Liang Hermjakob, Henning Tang, Haixu Gao, Huanhuan Deng, Yamin Zhong, Qing Chang, Cheng Bandeira, Nuno Li, Ming Weinan, E. Sun, Siqi Yang, Yuedong Omenn, Gilbert S. Zhang, Yue Xu, Ping Fu, Yan Liu, Xiaowen Overall, Christopher M. Wang, Yu Deutsch, Eric W. Chen, Luonan Cox, Jürgen Demichev, Vadim He, Fuchu Huang, Jiaxing Jin, Huilin Liu, Chao Li, Nan Luan, Zhongzhi Song, Jiangning Yu, Kaicheng Wan, Wanggen Wang, Tai Zhang, Kang Zhang, Le Bell, Peter A. Mann, Matthias Zhang, Bing Guo, Tiannan Affiliated Hangzhou First People’s Hospital State Key Laboratory of Medical Proteomics School of Medicine Westlake University Zhejiang Province Hangzhou China Westlake Center for Intelligent Proteomics Westlake Laboratory of Life Sciences and Biomedicine Zhejiang Province Hangzhou China Biology Department Brigham Young University ProvoUT84602 United States Department of Computer Science University of Antwerp Antwerp2020 Belgium Department of Biochemistry CharitéUniversitätsmedizin Berlin Berlin Germany Biomedicine Discovery Institute Department of Biochemistry and Molecular Biology Monash University MelbourneVICVIC 3800 Australia Wellcome Genome Campus Hinxton CambridgeCB10 1SD United Kingdom Harvard Medical School Ludwig Center at Harvard United States Harvard Medical School Broad Institute Ludwig Center at Harvard Dana-Farber Cancer Institute United States Department of Biology Institute of Molecular Systems Biology ETH Zürich Zürich Switzerland Bruker Ltd. MiltonONL9T 6P4 Canada AI for Life Sciences Lab Tencent Shenzhen518057 China State Key Laboratory of Medical Proteomics AI for Science Institute Beijing100080 China Beijing Institute of Lifeomics Beijing102206 China Thermo Fisher Scientific GmbH Hanna-Kunath Str. 11 Bremen28199 Germany Informatics and Predictive Sciences Research Bristol Myers Squibb United States Department of Chemistry Fudan University Songhu Road 2005 Shanghai200438 China Department of Computer Science Luddy School of Informatics Computing and Engineering Indiana University IN47408 United States ProCan® Children’s Medical Research Institute Faculty of Medicine and Health The University of Sydney WestmeadNSW Australia La Jolla CA United States Central China Institute of Artificial Intelligence University of Waterloo Canada AI for Science Institute Center for Machine Learning Research School of Mathematical Sciences Peking University China Research Institute of Intelligent Complex Systems Fudan U

Artificial intelligence (AI) is transforming scientific research, including proteomics. Advances in mass spectrometry (MS)-based proteomics data quality, diversity, and scale, combined with groundbreaking AI techniques, are unlocking new challenges and opportunities in biological discovery. Here, we highlight key areas where AI is driving innovation, from data analysis to new biological insights. These include developing an AI-friendly ecosystem for proteomics data generation, sharing, and analysis;improving peptide and protein identification and quantification;characterizing protein-protein interactions and protein complexes;advancing spatial and perturbation proteomics;integrating multi-omics data;and ultimately enabling AI-empowered virtual cells. © 2025, CC BY.

关键词： Biotic

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Predicting violent behavior using language agnostic models 10

Predicting violent behavior using language agnostic models

引用

10th International Joint Conference on knowledge Discovery, knowledge engineering and knowledge Management, IC3K 2018

作者： Liu, Yingjie Wert, Gregory Greenawald, Benjamin Boni, Mohammad Al Brown, Donald E. Data Science Institute University of Virginia United States Department of Systems and Information Engineering University of Virginia United States

ISBN: (纸本)9789897583308

Groups advocating violence have caused significant destruction to individuals and societies. To combat this, governmental and non-governmental organizations must quickly identify violent groups and limit their exposure. While some groups are well-known for their violence, smaller, less recognized groups are difficult to classify. However, using texts from these groups, we may be able to identify them. This paper applies text analysis techniques to differentiate violent and non-violent groups using discourses from various value-motivated groups. Significantly, the algorithms are constructed to be language-agnostic. The results show that deep learning models outperform traditional models. Our models achieve high accuracy when fairly trained only on data from other groups. Additionally, the results indicate that the models achieve better performance by removing groups with a large amount of documents that can bias the classification. This study shows promise in using scalable, language-independent techniques to effectively identify violent value-motivated groups. Copyright 2018 by SCITEPRESS – Science and Technology Publications, Lda. All rights reserved

关键词： information retrieval systems

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Comparison of phase change process in Si-GST hybrid integrated waveguide and MMI devices

arXiv

引用

arXiv 2020年

作者： Zhang, Hanyu Yang, Xing Lu, Liangjun Chen, Jianping Rahman, B.M.A. Zhou, Linjie College of Telecommunications and Information Engineering Nanjing University of Posts and Telecommunications Nanjing210023 China State Key Laboratory of Advanced Optical Communication Systems and Networks Shanghai Institute for Advanced Communication and Data Science Department of Electronic Engineering Shanghai Jiao Tong University Shanghai200240 China Department of Electrical and Electronic Engineering City University of London LondonEC 1V0HB United Kingdom

In the past decades, silicon photonic integrated circuits (PICs) have been considered as a promising approach to solve the bandwidth bottleneck in optical communications and interconnections. Despite significant advances, large-scale PICs still face a series of technical challenges, such as footprint, power consumption, and routing state storage, resulting from the active tuning methods used to control the optical waves. These challenges can be partially addressed by combining chalcogenide phase change materials (PCMs) such as Ge2Sb2Te5 (GST) with silicon photonics, especially applicable in switching applications due to the nonvolatile nature of the GST. Although GST phase transitions between amorphous and crystalline states actuated by optical and electrical pulses heating have been experimentally demonstrated, there is no direct comparison between them. We carried out simulations and experiments to systematically investigate the difference in the phase change process induced by optical and electrical pulses for two types of Si-GST hybrid waveguides. For the phase transition induced by optical pulses, the device has a clear advantage in terms of power consumption and operation speed. For the phase transition induced by electrical pulses, the device is suitable for large-scale integration because it does not require complex light routing. It helps us better understand the phase change process and push forward the further development of Si-GST hybrid integration platform, bringing in new potential *** Codes 78M50 Copyright © 2020, The Authors. All rights reserved.

关键词： Photonic devices

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Social media in product development

Social media in product development

引用

2018 systems and information engineering Design Symposium, SIEDS 2018

作者： Sandor, Logan Midura, Justis Abedin, Sabreena Ingber, George Pederson, Maxwell Sander, Tim Wolf, Liam Bailey, Reid Flower, Abigail Department of Systems and Information Engineering University of Virginia United States Data Science Institute University of Virginia United States

ISBN: (纸本)9781538663431

Social media offers a unique and wide-reaching view into consumers' thoughts, opinions, recommendations, and personal experiences. This kind of information can be valuable in the product development process. The focus of this project is to examine if and how unprompted social media data can inform new product development using a case study with a Fortune 100 consumer products company. In the case study, a text analytics tool was created to allow discovery and exploration of potential new trends in skincare ingredients and application methods using data obtained from Reddit, Facebook, and skincare blogs. The tool identifies and monitors trends over time for popularity and impact to inform decision making in new product development. Based on the case study, important factors in using social media to identify trends include 1) finding social media sites with relevant content to meet the goals of the project, 2) using term lists to target specific areas of interest, and 3) considering time with respect to frequency of postings, setting time periods of trend measurement, and ensuring the data includes timestamps. Setting the time period over which trends are assessed involves a trade-off between the ability to identify early trends (shorter time periods are better) and sufficient data (longer time periods are better). In the case study, sites where people come for help from a community (e.g., Reddit) and DIY/maker blogs proved to be good sources of emerging trends. The use of term lists proved key in targeting analyses on ingredients and application methods in the case. © 2018 IEEE.

关键词： Product development

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