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检索条件"机构=Department of Mathematics and Computational and Data-Enabled Science and Engineering Program"
130 条 记 录,以下是71-80 订阅
排序:
Critical mass effect in evolutionary games triggered by zealots
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Physical Review Research 2020年 第2期2卷 023305-023305页
作者: Alessio Cardillo Naoki Masuda Department of Engineering Mathematics University of Bristol Bristol BS8 1UB United Kingdom Department of Computer Science and Mathematics University Rovira i Virgili E-43007 Tarragona Spain GOTHAM Lab – Institute for Biocomputation and Physics of Complex Systems (BIFI) University of Zaragoza E-50018 Zaragoza Spain Department of Mathematics State University of New York at Buffalo Buffalo New York 14260-2900 USA Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo Buffalo New York 14260-5030 USA
Tiny perturbations may trigger large responses in systems near criticality, shifting them across equilibria. Committed minorities are suggested to be responsible for the emergence of collective behaviors in many physi... 详细信息
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Interplay between k-core and community structure in complex networks
arXiv
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arXiv 2020年
作者: Malvestio, Irene Cardillo, Alessio Masuda, Naoki Department of Engineering Mathematics University of Bristol BristolBS8 1UB United Kingdom Department of Computer Science and Mathematics University Rovira i Virgili TarragonaE-43007 Spain University of Zaragoza ZaragozaE-50018 Spain Department of Mathematics University at Buffalo BuffaloNY14260-2900 United States Computational and Data-Enabled Science and Engineering Program University at Buffalo State University of New York BuffaloNY14260-5030 United States
The organisation of a network in a maximal set of nodes having at least k neighbours within the set, known as k-core decomposition, has been used for studying various phenomena. It has been shown that nodes in the inn... 详细信息
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Small inter-event times govern epidemic spreading on networks
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Physical Review Research 2020年 第2期2卷 023163-023163页
作者: Naoki Masuda Petter Holme Department of Mathematics University at Buffalo State University of New York Buffalo New York 14260-2900 USA Computational and Data-Enabled Science and Engineering Program University at Buffalo State University of New York Buffalo New York 14260-5030 USA Tokyo Tech World Research Hub Initiative (WRHI) Institute of Innovative Research Tokyo Institute of Technology Yokohama 226-8503 Japan
Many aspects of human and animal interaction, such as the frequency of contacts of an individual, the number of interaction partners, and the time between the contacts of two individuals, are characterized by heavy-ta... 详细信息
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Finding shortest and nearly shortest path nodes in large substantially incomplete networks
arXiv
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arXiv 2022年
作者: Kitsak, Maksim Ganin, Alexander Elmokashfi, Ahmed Cui, Hongzhu Eisenberg, Daniel A. Alderson, David L. Korkin, Dmitry Linkov, Igor Faculty of Electrical Engineering Mathematics and Computer Science Delft University of Technology Delft Netherlands Network Science Institute Northeastern University BostonMA02115 United States Department of Systems and Information Engineering University of Virginia CharlottesvilleVA22904 United States U.S. Army Engineer Research and Development Center Contractor Concord MA01742 United States Simula Metropolitan Center for Digital Engineering Oslo Norway Bioinformatics and Computational Biology Program Worcester Polytechnic Institute WorcesterMA01609 United States Institute for Genomic Medicine Columbia University Medical Center New YorkNY United States Operations Research Department Naval Postgraduate School MontereyCA93943 United States Data Science Program Worcester Polytechnic Institute WorcesterMA01609 United States Computer Science Department Worcester Polytechnic Institute WorcesterMA01609 United States U.S. Army Engineer Research and Development Center Environmental Laboratory Concord MA01742 United States
Dynamic processes on networks, be it information transfer in the Internet, contagious spreading in a social network, or neural signaling, take place along shortest or nearly shortest paths. Unfortunately, our maps of ... 详细信息
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Opinion dynamics on tie-decay networks
arXiv
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arXiv 2020年
作者: Sugishita, Kashin Porter, Mason A. Beguerisse-Díaz, Mariano Masuda, Naoki Department of Mathematics State University of New York at Buffalo BuffaloNY14260-2900 United States Department of Mathematics University of California Los AngelesCA90095 United States Mathematical Institute University of Oxford OxfordOX2 6GG United Kingdom Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo BuffaloNY14260-5030 United States Faculty of Science and Engineering Waseda University Tokyo169-8555 Japan
In social networks, interaction patterns typically change over time. We study opinion dynamics on tie-decay networks in which tie strength increases instantaneously when there is an interaction and decays exponentiall... 详细信息
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Estimating international trade status of countries from global liner shipping networks
arXiv
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arXiv 2020年
作者: Xu, Mengqiao Pan, Qian Xia, Haoxiang Masuda, Naoki School of Economics and Management Dalian University of Technology No. 2 Linggong Road Ganjingzi District Dalian City Liaoning Province116024 China Department of Mathematics University at Buffalo BuffaloNY14260-2900 United States Computational and Data-Enabled Science and Engineering Program University at Buffalo State University of New York BuffaloNY14260-5030 United States
Maritime shipping is a backbone of international trade and thus the world economy. Vessels travel from a port of one country to another on networks of ports to carry cargos, which contribute to countries’ internation... 详细信息
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Integrating spatially-resolved transcriptomics data across tissues and individuals: challenges and opportunities
arXiv
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arXiv 2024年
作者: Guo, Boyi Ling, Wodan Kwon, Sang Ho Panwar, Pratibha Ghazanfar, Shila Martinowich, Keri Hicks, Stephanie C. Department of Biostatistics Johns Hopkins Bloomberg School of Public Health BaltimoreMD United States Division of Biostatistics Department of Population Health Sciences Weill Cornell Medicine NY United States Lieber Institute for Brain Development Johns Hopkins Medical Campus BaltimoreMD United States Solomon H. Snyder Department of Neuroscience Johns Hopkins School of Medicine BaltimoreMD United States Biochemistry Cellular and Molecular Biology Graduate Program Johns Hopkins School of Medicine BaltimoreMD United States School of Mathematics and Statistics The University of Sydney NSW2006 Australia Sydney Precision Data Science Centre University of Sydney NSW2006 Australia Charles Perkins Centre The University of Sydney NSW2006 Australia Department of Psychiatry and Behavioral Sciences Johns Hopkins School of Medicine BaltimoreMD United States Johns Hopkins Kavli Neuroscience Discovery Institute BaltimoreMD United States Department of Biomedical Engineering Johns Hopkins University BaltimoreMD United States Center for Computational Biology Johns Hopkins University BaltimoreMD United States Malone Center for Engineering in Healthcare Johns Hopkins University BaltimoreMD United States
Advances in spatially-resolved transcriptomics (SRT) technologies have propelled the development of new computational analysis methods to unlock biological insights. As the cost of generating these data decreases, the... 详细信息
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SI-spreading-based network embedding in static and temporal networks
arXiv
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arXiv 2020年
作者: Zhan, Xiu-Xiu Li, Ziyu Masuda, Naoki Holme, Petter Wang, Huijuan Faculty of Electrical Engineering Mathematics and Computer Science Delft University of Technology Mekelweg 4 Delft2628 CD Netherlands Department of Mathematics University at Buffalo State University of New York Buffalo New YorkNY14260-2900 United States Computational and Data-Enabled Science and Engineering Program University at Buffalo State University of New York Buffalo New YorkNY14260-2900 United States Institute of Innovative Research Tokyo Institute of Technology Yokohama226-8503 Japan
Link prediction can be used to extract missing information, identify spurious interactions as well as forecast network evolution. Network embedding is a methodology to assign coordinates to nodes in a low-dimensional ... 详细信息
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Metrics for benchmarking and uncertainty quantification: Quality, applicability, and a path to best practices for machine learning in chemistry
arXiv
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arXiv 2020年
作者: Vishwakarma, Gaurav Sonpal, Aditya Hachmann, Johannes Department of Chemical and Biological Engineering University at Buffalo State University of New York BuffaloNY14260 United States Computational and Data-Enabled Science and Engineering Graduate Program University at Buffalo State University of New York BuffaloNY14260 United States New York State Center of Excellence in Materials Informatics BuffaloNY14203 United States
This review aims to draw attention to two issues of concern when we set out to make machine learning work in the chemical and materials domain, i.e., statistical loss function metrics for the validation and benchmarki... 详细信息
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DeePMD-kit v2: A software package for Deep Potential models
arXiv
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arXiv 2023年
作者: Zeng, Jinzhe Zhang, Duo Lu, Denghui Mo, Pinghui Li, Zeyu Chen, Yixiao Rynik, Marián Huang, Li'ang Li, Ziyao Shi, Shaochen Wang, Yingze Ye, Haotian Tuo, Ping Yang, Jiabin Ding, Ye Li, Yifan Tisi, Davide Zeng, Qiyu Bao, Han Xia, Yu Huang, Jiameng Muraoka, Koki Wang, Yibo Chang, Junhan Yuan, Fengbo Bore, Sigbjørn Løland Cai, Chun Lin, Yinnian Wang, Bo Xu, Jiayan Zhu, Jia-Xin Luo, Chenxing Zhang, Yuzhi Goodall, Rhys E.A. Liang, Wenshuo Singh, Anurag Kumar Yao, Sikai Zhang, Jingchao Wentzcovitch, Renata Han, Jiequn Liu, Jie Jia, Weile York, Darrin M. Weinan, E. Car, Roberto Zhang, Linfeng Wang, Han Laboratory for Biomolecular Simulation Research Institute for Quantitative Biomedicine Department of Chemistry and Chemical Biology Rutgers University PiscatawayNJ08854 United States AI for Science Institute Beijing100080 China DP Technology Beijing100080 China Academy for Advanced Interdisciplinary Studies Peking University Beijing100871 China HEDPS CAPT College of Engineering Peking University Beijing100871 China College of Electrical and Information Engineering Hunan University Changsha China Yuanpei College Peking University Beijing100871 China Program in Applied and Computational Mathematics Princeton University PrincetonNJ08540 United States Department of Experimental Physics Comenius University Mlynská Dolina F2 Bratislava842 48 Slovakia Center for Quantum Information Institute for Interdisciplinary Information Sciences Tsinghua University Beijing100084 China Center for Data Science Peking University Beijing100871 China ByteDance Research Zhonghang Plaza No. 43 North 3rd Ring West Road Haidian District Beijing China College of Chemistry and Molecular Engineering Peking University Beijing100871 China Baidu Inc. Beijing China Key Laboratory of Structural Biology of Zhejiang Province School of Life Sciences Westlake University Zhejiang Hangzhou China Westlake AI Therapeutics Lab Westlake Laboratory of Life Sciences and Biomedicine Zhejiang Hangzhou China Department of Chemistry Princeton University PrincetonNJ08544 United States SISSA Scuola Internazionale Superiore di Studi Avanzati Trieste34136 Italy Laboratory of Computational Science and Modeling Institute of Materials École Polytechnique Fédérale de Lausanne Lausanne1015 Switzerland Department of Physics National University of Defense Technology Hunan Changsha410073 China State Key Lab of Processors Institute of Computing Technology Chinese Academy of Sciences Beijing China University of Chinese Academy of Sciences Beijing China School of Electronics Engineerin
DeePMD-kit is a powerful open-source software package that facilitates molecular dynamics simulations using machine learning potentials (MLP) known as Deep Potential (DP) models. This package, which was released in 20... 详细信息
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