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Higher-order rich-club phenomenon in collaborative research grant networks

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arXiv 2022年

作者： Nakajima, Kazuki Shudo, Kazuyuki Masuda, Naoki Department of Mathematical and Computing Science Tokyo Institute of Technology Meguro-ku Tokyo152-8552 Japan Department of Mathematics State University of New York at Buffalo Buffalo14260 United States Academic Center for Computing and Media Studies Kyoto University Sakyo-ku Kyoto606-8501 Japan Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo Buffalo14260 United States Faculty of Science and Engineering Waseda University Tokyo169-8555 Japan

Modern scientific work, including writing papers and submitting research grant proposals, increasingly involves researchers from different institutions. In grant collaborations, it is known that institutions involved in many collaborations tend to densely collaborate with each other, forming rich clubs. Here we investigate higher-order rich-club phenomena in networks of collaborative research grants among institutions and their associations with research impact. Using publicly available data from the National science Foundation in the US, we construct a bipartite network of institutions and collaborative grants, which distinguishes among the collaboration with different numbers of institutions. By extending the concept and algorithms of the rich club for dyadic networks to the case of bipartite networks, we find rich clubs both in the entire bipartite network and the bipartite subnetwork induced by the collaborative grants involving a given number of institutions up to five. We also find that the collaborative grants within rich clubs tend to be more productive in a per-dollar sense than the control. Our results highlight advantages of collaborative grants among the institutions in the rich clubs. Copyright © 2022, The Authors. All rights reserved.

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Cloaking the underlying long-range order of randomly perturbed lattices

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Physical Review E 2020年第3期101卷 032118-032118页

作者： Michael A. Klatt Jaeuk Kim Salvatore Torquato Department of Physics Princeton University Princeton New Jersey 08544 USA Department of Chemistry Princeton Institute for the Science and Technology of Materials and Program in Applied and Computational Mathematics Princeton University Princeton New Jersey 08544 USA

Random, uncorrelated displacements of particles on a lattice preserve the hyperuniformity of the original lattice, that is, normalized density fluctuations vanish in the limit of infinite wavelengths. In addition to a diffuse contribution, the scattering intensity from the the resulting point pattern typically inherits the Bragg peaks (long-range order) of the original lattice. Here we demonstrate how these Bragg peaks can be hidden in the effective diffraction pattern of independent and identically distributed perturbations. All Bragg peaks vanish if and only if the sum of all probability densities of the positions of the shifted lattice points is a constant at all positions. The underlying long-range order is then “cloaked” in the sense that it cannot be reconstructed from the pair correlation function alone. On the one hand, density fluctuations increase monotonically with the strength of perturbations a, as measured by the hyperuniformity order metric Λ¯. On the other hand, the disappearance and reemergence of long-range order, depending on whether the system is cloaked as the perturbation strength increases, is manifestly captured by the τ order metric. Therefore, while the perturbation strength a may seem to be a natural choice for an order metric of perturbed lattices, the τ order metric is a superior choice. It is noteworthy that cloaked perturbed lattices allow one to easily simulate very large samples (with at least 106 particles) of disordered hyperuniform point patterns without Bragg peaks.

关键词： Classical statistical mechanics

Self-learning Monte Carlo for non-Abelian gauge theory with dynamical fermions

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Physical Review D 2023年第5期107卷 054501-054501页

作者： Yuki Nagai Akinori Tanaka Akio Tomiya Mathematical Science Team RIKEN Center for Advanced Intelligence Project (AIP) 1-4-1 Nihonbashi Chuo-ku Tokyo 103-0027 Japan CCSE Japan Atomic Energy Agency 178-4-4 Wakashiba Kashiwa Chiba 277-0871 Japan Interdisciplinary Theoretical and Mathematical Sciences Program (iTHEMS) RIKEN 2-1 Hirosawa Wako Saitama 351-0198 Japan Department of Mathematics Faculty of Science and Technology Keio University 3-14-1 Hiyoshi Kouhoku-ku Yokohama 223-8522 Japan RIKEN/BNL Research center Brookhaven National Laboratory Upton New York 11973 USA

In this paper, we develop the self-learning Monte-Carlo (SLMC) algorithm for non-Abelian gauge theory with dynamical fermions in four dimensions to resolve the autocorrelation problem in lattice QCD. We perform simulations with the dynamical staggered fermions and plaquette gauge action by both in the hybrid Monte-Carlo (HMC) and SLMC for zero and finite temperature to examine the validity of SLMC. We confirm that SLMC can reduce autocorrelation time in non-Abelian gauge theory and reproduce results from HMC. For finite temperature runs, we confirm that SLMC reproduces correct results with HMC, including higher-order moments of the Polyakov loop and the chiral condensate. Besides, our finite temperature calculations indicate that four flavor QC2D with m^=0.5 is likely in the crossover regime in the Colombia plot.

关键词： Lattice QCD Finite temperature field theory Heatbath algorithm Lattice gauge theory Machine learning Metropolis algorithm Monte Carlo methods

Generating Function for Projected Entangled-Pair States

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PRX Quantum 2024年第1期5卷 010335-010335页

作者： Wei-Lin Tu Laurens Vanderstraeten Norbert Schuch Hyun-Yong Lee Naoki Kawashima Ji-Yao Chen Faculty of Science and Technology Keio University 3-14-1 Hiyoshi Kohoku-ku Yokohama 223-8522 Japan Center for Nonlinear Phenomena and Complex Systems Université Libre de Bruxelles B-1050 Bruxelles Belgium University of Vienna Faculty of Physics Boltzmanngasse 5 Wien 1090 Austria University of Vienna Faculty of Mathematics Oskar-Morgenstern-Platz 1 Wien 1090 Austria Division of Display and Semiconductor Physics Korea University Sejong 30019 Korea Department of Applied Physics Graduate School Korea University Sejong 30019 Korea Interdisciplinary Program in E·ICT-Culture-Sports Convergence Korea University Sejong 30019 Korea Institute for Solid State Physics The University of Tokyo Kashiwa Chiba 277-8581 Japan Trans-scale Quantum Science Institute The University of Tokyo Bunkyo Tokyo 113-0033 Japan Center for Neutron Science and Technology Guangdong Provincial Key Laboratory of Magnetoelectric Physics and Devices School of Physics Sun Yat-sen University Guangzhou 510275 China

Diagrammatic summation is a common bottleneck in modern applications of projected entangled-pair states, especially in computing low-energy excitations of a two-dimensional quantum many-body system. To solve this problem, here we extend the generating-function approach for tensor-network diagrammatic summation, a scheme previously proposed in the context of matrix product states. Taking the form of a one-particle excitation, we show that the excited state can be computed efficiently in the generating-function formalism, which can further be used in evaluating the dynamical structure factor of the system. Our benchmark results for the spin-1/2 transverse-field Ising model and Heisenberg model on the square lattice provide a desirable accuracy, showing good agreement with known results. We then study the spin-1/2J1-J2 model on the same lattice and investigate the dynamical properties of the putative gapless spin liquid phase. We conclude with a discussion on generalizations to multiparticle excitations.

关键词： Quasiparticles & collective excitations Quantum many-body systems Quantum spin models Strongly correlated systems Many-body techniques Projected entangled pair states Tensor network methods

Quality of internal representation shapes learning performance in feedback neural networks

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Physical Review Research 2021年第1期3卷 013176-013176页

作者： Lee Susman Francesca Mastrogiuseppe Naama Brenner Omri Barak Interdisciplinary Program in Applied Mathematics Technion Israel Institute of Technology Haifa 32000 Israel Network Biology Research Laboratories Technion Israel Institute of Technology Haifa 32000 Israel Gatsby Computational Neuroscience Unit University College London London W1T 4JG United Kingdom Department of Chemical Engineering Technion Israel Institute of Technology Haifa 32000 Israel Rappaport Faculty of Medicine Technion Israel Institute of Technology Haifa 32000 Israel

A fundamental feature of complex biological systems is the ability to form feedback interactions with their environment. A prominent model for studying such interactions is reservoir computing, where learning acts on low-dimensional bottlenecks. Despite the simplicity of this learning scheme, the factors contributing to or hindering the success of training in reservoir networks are in general not well understood. In this work, we study nonlinear feedback networks trained to generate a sinusoidal signal, and analyze how learning performance is shaped by the interplay between internal network dynamics and target properties. By performing exact mathematical analysis of linearized networks, we predict that learning performance is maximized when the target is characterized by an optimal, intermediate frequency which monotonically decreases with the strength of the internal reservoir connectivity. At the optimal frequency, the reservoir representation of the target signal is high-dimensional, desynchronized, and thus maximally robust to noise. We show that our predictions successfully capture the qualitative behavior of performance in nonlinear networks. Moreover, we find that the relationship between internal representations and performance can be further exploited in trained nonlinear networks to explain behaviors which do not have a linear counterpart. Our results indicate that a major determinant of learning success is the quality of the internal representation of the target, which in turn is shaped by an interplay between parameters controlling the internal network and those defining the task.

关键词： Learning theory Artificial neural networks Dynamical systems Neuronal network models

A sharp interface Lagrangian-Eulerian method for flexible-body fluid-structure interaction

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arXiv 2022年

作者： Kolahdouz, Ebrahim M. Wells, David R. Rossi, Simone Aycock, Kenneth I. Craven, Brent A. Griffith, Boyce E. Center for Computational Biology Flatiron Institute Simons Foundation New YorkNY United States Department of Mathematics University of North Carolina Chapel HillNC United States Division of Applied Mechanics Office of Science and Engineering Laboratories Center for Devices and Radiological Health United States Food and Drug Administration Silver SpringMD United States Departments of Mathematics and Biomedical Engineering University of North Carolina Chapel HillNC United States Carolina Center for Interdisciplinary Applied Mathematics University of North Carolina Chapel HillNC United States Computational Medicine Program University of North Carolina Chapel HillNC United States McAllister Heart Institute University of North Carolina Chapel HillNC United States

This paper introduces a sharp-interface approach to simulating fluid-structure interaction (FSI) involving flexible bodies described by general nonlinear material models and across a broad range of mass density ratios. This new flexible-body immersed Lagrangian-Eulerian (ILE) scheme extends our prior work on integrating partitioned and immersed approaches to rigid-body FSI. Our numerical approach incorporates the geometrical and domain solution flexibility of the immersed boundary (IB) method with an accuracy comparable to body-fitted approaches that sharply resolve flows and stresses up to the fluid-structure interface. Unlike many IB methods, our ILE formulation uses distinct momentum equations for the fluid and solid subregions with a Dirichlet-Neumann coupling strategy that connects fluid and solid subproblems through simple interface conditions. As in earlier work, we use approximate Lagrange multiplier forces to treat the kinematic interface conditions along the fluid-structure interface. This penalty approach simplifies the linear solvers needed by our formulation by introducing two representations of the fluid-structure interface, one that moves with the fluid and another that moves with the structure, that are connected by stiff springs. This approach also enables the use of multi-rate time stepping, which allows us to use different time step sizes for the fluid and structure subproblems. Our fluid solver relies on an immersed interface method (IIM) for discrete surfaces to impose stress jump conditions along complex interfaces while enabling the use of fast structured-grid solvers for the incompressible Navier-Stokes equations. The dynamics of the volumetric structural mesh are determined using a standard finite element approach to large-deformation nonlinear elasticity via a nearly incompressible solid mechanics formulation. This formulation also readily accommodates compressible structures with a constant total volume, and it can handle fully compressibl

关键词： Fluid structure interaction

Heat transport in liquid water from first-principles and deep-neural-network simulations

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arXiv 2021年

作者： Tisi, Davide Zhang, Linfeng Bertossa, Riccardo Wang, Han Car, Roberto Baroni, Stefano SISSA - Scuola Internazionale Superiore di Studi Avanzati Trieste34136 Italy Program in Applied and Computational Mathematics Princeton University PrincetonNJ08544 United States Laboratory of Computational Physics Institute of Applied Physics and Computational Mathematics Huayuan Road 6 Beijing100088 China Department of Chemistry Department of Physics Princeton Institute for the Science and Technology of Materials Princeton University PrincetonNJ08544 United States CNR Istituto Officina Dei Materiali SISSA Unit Trieste34136 Italy

We compute the thermal conductivity of water within linear response theory from equilibrium molecular dynamics simulations, by adopting two different approaches. In one, the potential energy surface (PES) is derived on the fly from the electronic ground state of density functional theory (DFT) and the corresponding analytical expression is used for the energy flux. In the other, the PES is represented by a deep neural network (DNN) trained on DFT data, whereby the PES has an explicit local decomposition and the energy flux takes a particularly simple expression. By virtue of a gauge invariance principle, established by Marcolongo, Umari, and Baroni, the two approaches should be equivalent if the PES were reproduced accurately by the DNN model. We test this hypothesis by calculating the thermal conductivity, at the GGA (PBE) level of theory, using the direct formulation and its DNN proxy, finding that both approaches yield the same conductivity, in excess of the experimental value by approximately 60%. Besides being numerically much more efficient than its direct DFT counterpart, the DNN scheme has the advantage of being easily applicable to more sophisticated DFT approximations, such as meta-GGA and hybrid functionals, for which it would be hard to derive analytically the expression of the energy flux. We find in this way, that a DNN model, trained on meta-GGA (SCAN) data, reduce the deviation from experiment of the predicted thermal conductivity by about 50%, leaving the question open as to whether the residual error is due to deficiencies of the functional, to a neglect of nuclear quantum effects in the atomic dynamics, or, likely, to a combination of the two. Copyright © 2021, The Authors. All rights reserved.

关键词： Deep neural networks

ABACUS: An Electronic Structure Analysis Package for the AI Era

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arXiv 2025年

作者： Zhou, Weiqing Zheng, Daye Liu, Qianrui Lu, Denghui Liu, Yu Lin, Peize Huang, Yike Peng, Xingliang Bao, Jie J. Cai, Chun Jin, Zuxin Wu, Jing Zhang, Haochong Jin, Gan Ji, Yuyang Shen, Zhenxiong Liu, Xiaohui Sun, Liang Cao, Yu Sun, Menglin Liu, Jianchuan Chen, Tao Liu, Renxi Li, Yuanbo Han, Haozhi Liang, Xinyuan Bao, Taoni Chen, Nuo Ren, Hongxu Zhang, Xiaoyang Liu, Zhaoqing Fu, Yiwei Liu, Maochang Li, Zhuoyuan Wen, Tongqi Tang, Zechen Xu, Yong Duan, Wenhui Wang, Xiaoyang Gu, Qiangqiang Dai, Fu-Zhi Zheng, Qijing Zhao, Jin Zhang, Yuzhi Ou, Qi Jiang, Hong Liu, Shi Xu, Ben Xu, Shenzhen Ren, Xinguo He, Lixin Zhang, Linfeng Chen, Mohan AI for Science Institute Beijing100080 China HEDPS CAPT School of Physics College of Engineering Peking University Beijing100871 China College of Engineering Peking University Beijing100871 China Institute of Artificial Intelligence Hefei Comprehensive National Science Center Hefei230026 China Key Laboratory of Quantum Information University of Science and Technology of China Hefei230026 China Supercomputing Center University of Science and Technology of China Anhui Hefei230026 China Institute of Physics Chinese Academy of Sciences Beijing100190 China School of Materials Science and Engineering Peking University Beijing100871 China School of Electrical Engineering and Electronic Information Xihua University Chengdu610039 China Academy for Advanced Interdisciplinary Studies Peking University Beijing100871 China College of Chemistry and Molecular Engineering Peking University Beijing100871 China International Research Center for Renewable Energy State Key Laboratory of Multiphase Flow Xi’an Jiaotong University Shaanxi Xi’an710049 China Suzhou Academy of Xi’an Jiaotong University Jiangsu Suzhou215123 China Center for Structural Materials Department of Mechanical Engineering The University of Hong Kong Hong Kong The University of Hong Kong Shenzhen China State Key Laboratory of Low Dimensional Quantum Physics Department of Physics Tsinghua University Beijing100084 China Frontier Science Center for Quantum Information Beijing China Saitama Wako351-0198 Japan Institute for Advanced Study Tsinghua University Beijing100084 China Laboratory of Computational Physics Institute of Applied Physics and Computational Mathematics Fenghao East Road 2 Beijing100094 China School of Artificial Intelligence and Data Science University of Science and Technology of China Hefei230026 China School of Materials Science and Engineering University of Science and Technology Beijing Beijing100083 China Department of Physics University of Science and

ABACUS (Atomic-orbital Based Ab-initio Computation at USTC) is an open-source software for first-principles electronic structure calculations and molecular dynamics simulations. It mainly features density functional theory (DFT) and is compatible with both plane-wave basis sets and numerical atomic orbital basis sets. ABACUS serves as a platform that facilitates the integration of various electronic structure methods, such as Kohn-Sham DFT, stochastic DFT, orbital-free DFT, and real-time time-dependent DFT, etc. In addition, with the aid of high-performance computing, ABACUS is designed to perform efficiently and provide massive amounts of first-principles data for generating general-purpose machine learning potentials, such as DPA models. Furthermore, ABACUS serves as an electronic structure platform that interfaces with several AI-assisted algorithms and packages, such as DeePKS-kit, DeePMD, DP-GEN, DeepH, DeePTB, etc. Copyright © 2025, The Authors. All rights reserved.

关键词： Stochastic systems

On the Age of Status Updates in Unreliable Multi-Source M/G/1 Queueing Systems

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arXiv 2022年

作者： SenthilKumar, Muthukrishnan Dadlani, Aresh Moradian, Masoumeh Khonsari, Ahmad Tsiftsis, Theodoros A. The Department of Applied Mathematics and Computational Sciences Psg College of Technology Coimbatore641004 India The Faculty of Arts - Interdisciplinary Studies University of Alberta EdmontonABT6G 2E7 Canada The Department of Electrical and Computer Engineering Nazarbayev University Astana010000 Kazakhstan The School of Computer Science Institute for Research in Fundamental Sciences Tehran Iran The Department of Electrical and Computer Engineering University of Tehran Iran The Institute for Research in Fundamental Sciences Tehran Iran The School of Intelligent Systems Science and Engineering Jinan University Zhuhai Campus Zhuhai519070 China

The timeliness of status message delivery in communications networks is subjective to time-varying wireless channel transmissions. In this paper, we investigate the age of information (AoI) of each source in a multi-source M/G/1queueingupdatesystem with active server failures. In particular, we adopt the method of supplementary variables to derive a closed-form expression for the average AoI in terms of system parameters, where the server repair time follows a general distribution and the service time of packets generated by independent sources is a general random variable. Numerical results are provided to validate the effectiveness of the proposed packet serving policy under different parametric settings. © 2022, CC BY.

关键词： Real time systems