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Modeling temporal networks with bursty activity patterns of nodes and links

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arXiv 2019年

作者： Hiraoka, Takayuki Masuda, Naoki Li, Aming Jo, Hang-Hyun Asia Pacific Center for Theoretical Physics Pohang37673 Korea Republic of Department of Mathematics University at Buffalo State University of New York BuffaloNY14260-2900 United States Computational and Data-Enabled Science and Engineering Program University at Buffalo State University of New York BuffaloNY14260-5030 United States Department of Zoology University of Oxford OxfordOX1 3PS United Kingdom Department of Biochemistry University of Oxford OxfordOX1 3QU United Kingdom Department of Physics Pohang University of Science and Technology Pohang37673 Korea Republic of Department of Computer Science Aalto University EspooFI-00076 Finland

The concept of temporal networks provides a framework to understand how the interaction between system components changes over time. In empirical communication data, we often detect non-Poissonian, so-called bursty behavior in the activity of nodes as well as in the interaction between nodes. However, such reconciliation between node burstiness and link burstiness cannot be explained if the interaction processes on different links are independent of each other. This is because the activity of a node is the superposition of the interaction processes on the links incident to the node and the superposition of independent bursty point processes is not bursty in general. Here we introduce a temporal network model based on bursty node activation and show that it leads to heavy-tailed inter-event time distributions for both node dynamics and link dynamics. Our analysis indicates that activation processes intrinsic to nodes give rise to dynamical correlations across links. Our framework offers a way to model competition and correlation between links, which is key to understanding dynamical processes in various systems. Copyright © 2019, The Authors. All rights reserved.

关键词： Chemical activation

Detection of features from the internet of things customer attitudes in the hotel industry using a deep neural network model

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Measurement: Sensors 2022年 22卷

作者： Rajesh, Sudha Abd Algani, Yousef Methkal Al Ansari, Mohammed Saleh Balachander, Bhuvaneswari Raj, Roop Muda, Iskandar Kiran Bala, B. Balaji, S. Dept. of Computational Intelligence College of Engineering and Technology School of Computing SRMIST Kattankulathur Chennai India Department of Mathematics Sakhnin College Israel College of Engineering Department of Chemical Engineering University of Bahrain Bahrain Department of ECE Saveetha School of Engineering Saveetha Institute of Medical and Technical Sciences Chennai602105 India Lecturer in Economics Education Department Government of Haryana Haryana Panchkula India Department of Doctoral Program Faculty Economic and Business Universitas Sumatera Utara 20222 Jl. Prof TM Hanafiah 12 USU Campus Padang bulan Medan20155 Indonesia Department of Artificial Intelligence and Data Science K.Ramakrishnan College of Engineering Tamil Nadu Trichy India Department of CSE Panimalar Engineering College Chennai India Department of Mathematics The Arab Academic College for Education in Israel-Haifa Israel

Tourism and the hotel business have benefited greatly from the use of digital social networking. Using social big data research, the application of deep learning seems to have been beneficial in a marketing strategies and customer preference estimate. Recognizing human psychology, which is critical to industrial success, has benefited greatly from digital technology and social media. The Internet of Things (IoT) provides a chance for a hotel sector to improve the customer experience although lowering operational expenses. The ratings are determined by the following factors: Value, Apartment, Location, Hygiene, Front Office, Facilities, Professional Service, Internet, and Parking. Traditional techniques which anticipate hotel evaluations through minimal precision add difficulty to the rating assessment. As a result, efficient deep learning algorithms are employed to evaluate reviews designed to help consumers in selecting better hotels. To predict qualities, multiple classification techniques, including convolutional neural network-based deep learning (CNN-DL) and support vector machine (SVM) network-based deep learning, were used in this research. The system examines system efficiency by using the TripAdvisor website, this is a well American database. The research results reveal that the CNN-DL method outperforms another method in terms of classification efficiency and failure *** graphical results could also be utilized to enhance the effectiveness of the suggested model and offer insights into response tactics, demonstrating the study's academic and conceptual achievements. Although it is feasible to conclude from such research that the possibility of IoT within the hotel industry has not yet been fully investigated, as researchers commonly speculate on using IoT for implementations that might quickly be of involvement to a hotel sector, but refuse to recognize that possibility as a massive market. © 2022 The Author(s)

关键词： Hotels

data-driven brain network models predict individual variability in behavior

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arXiv 2018年

作者： Bansal, Kanika Medaglia, John D. Bassett, Danielle S. Vettel, Jean M. Muldoon, Sarah F. Department of Mathematics University at Buffalo BuffaloNY United States U.S. Army Research Laboratory Aberdeen Proving GroundMD United States Department of Biomedical Engineering Columbia University New YorkNY United States Department of Psychology Drexel University PhiladelphiaPA United States Department of Neurology Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Biomedical Engineering University of Pennsylvania PhiladelphiaPA United States Department of Electrical and Systems Engineering University of Pennsylvania PhiladelphiaPA United States Department of Physics and Astronomy University of Pennsylvania PhiladelphiaPA United States Department of Psychological and Brain Sciences University of California Santa BarbaraCA United States Computational and Data-Enabled Science and Engineering Program University at Buffalo-SUNY BuffaloNY United States

The relationship between brain structure and function has been probed using a variety of approaches, but how the underlying structural connectivity of the human brain drives behavior is far from understood. To investigate the effect of anatomical brain organization on human task performance, we use a data-driven computational modeling approach and explore the functional effects of naturally occurring structural differences in brain networks. We construct personalized brain network models by combining anatomical connectivity estimated from diffusion spectrum imaging of individual subjects with a nonlinear model of brain dynamics. By performing computational experiments in which we measure the excitability of the global brain network and spread of synchronization following a targeted computational stimulation, we quantify how individual variation in the underlying connectivity impacts both local and global brain dynamics. We further relate the computational results to individual variability in the subjects' performance of three language-demanding tasks both before and after transcranial magnetic stimulation to the left-inferior frontal gyrus. Our results show that task performance correlates with either local or global measures of functional activity, depending on the complexity of the task. By emphasizing differences in the underlying structural connectivity, our model serves as a powerful tool to predict individual differences in task performances, to dissociate the effect of targeted stimulation in tasks that differ in cognitive complexity, and to pave the way for the development of personalized therapeutics. Copyright © 2018, The Authors. All rights reserved.

关键词： Digital storage

Empowering Precision Medicine: AI-Driven Schizophrenia Diagnosis via EEG Signals: A Comprehensive Review from 2002-2023

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arXiv 2023年

作者： Jafari, Mahboobeh Sadeghi, Delaram Shoeibi, Afshin Alinejad-Rokny, Hamid Beheshti, Amin García, David López Chen, Zhaolin Acharya, U. Rajendra Gorriz, Juan M. Internship in BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering UNSW Sydney SydneyNSW2052 Australia Data Science and Computational Intelligence Institute University of Granada Spain BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering UNSW Sydney SydneyNSW2052 Australia UNSW Data Science Hub The University of New South Wales SydneyNSW2052 Australia Health Data Analytics Program Centre for Applied Artificial Intelligence Macquarie University Sydney2109 Australia Data Science Lab School of Computing Macquarie University SydneyNSW2109 Australia Monash University Melbourne Australia School of Mathematics Physics and Computing University of Southern Queensland Springfield Australia Department of Psychiatry University of Cambridge United Kingdom

Schizophrenia (SZ) is a prevalent mental disorder characterized by cognitive, emotional, and behavioral changes. Symptoms of SZ include hallucinations, illusions, delusions, lack of motivation, and difficulties in concentration. While the exact causes of SZ remain unproven, factors such as brain injuries, stress, and psychotropic drugs have been implicated in its development. SZ can be classified into different types, including paranoid, disorganized, catatonic, undifferentiated, and residual. Diagnosing SZ involves employing various tools, including clinical interviews, physical examinations, psychological evaluations, the Diagnostic and Statistical Manual of Mental Disorders (DSM), and neuroimaging techniques. Electroencephalography (EEG) recording is a significant functional neuroimaging modality that provides valuable insights into brain function during SZ. However, EEG signal analysis poses challenges for neurologists and scientists due to the presence of artifacts, long-term recordings, and the utilization of multiple channels. To address these challenges, researchers have introduced artificial intelligence (AI) techniques, encompassing conventional machine learning (ML) and deep learning (DL) methods, to aid in SZ diagnosis. This study reviews papers focused on SZ diagnosis utilizing EEG signals and AI methods. The introduction section provides a comprehensive explanation of SZ diagnosis methods and intervention techniques. Subsequently, review papers in this field are discussed, followed by an introduction to the AI methods employed for SZ diagnosis and a summary of relevant papers presented in tabular form. Additionally, this study reports on the most significant challenges encountered in SZ diagnosis, as identified through a review of papers in this field. Future directions to overcome these challenges are also addressed. The discussion section examines the specific details of each paper, culminating in the presentation of conclusions and findings. © 2023,

关键词： Electroencephalography

Biases in Inverse Ising Estimates of Near-Critical Behaviour

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arXiv 2023年

作者： Kloucek, Maximilian B. Machon, Thomas Kajimura, Shogo Royall, C. Patrick Masuda, Naoki Turci, Francesco H.H. Wills Laboratory School of Physics University of Bristol Bristol United Kingdom Bristol Centre for Functional Nanomaterials University of Bristol Bristol United Kingdom Faculty of Information and Human Sciences Kyoto Institute of Technology Kyoto606-8585 Japan Gulliver UMR CNRS 7083 ESPCI Paris Université PSL Paris75005 France Department of Mathematics State University of New York BuffaloNY14260-2900 United States Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo BuffaloNY14260-5030 United States

Inverse Ising inference allows pairwise interactions of complex binary systems to be reconstructed from empirical correlations. Typical estimators used for this inference, such as Pseudo-likelihood maximization (PLM), are biased. Using the Sherrington-Kirkpatrick (SK) model as a benchmark, we show that these biases are large in critical regimes close to phase boundaries, and may alter the qualitative interpretation of the inferred model. In particular, we show that the small-sample bias causes models inferred through PLM to appear closer-to-criticality than one would expect from the data. data-driven methods to correct this bias are explored and applied to a functional magnetic resonance imaging (fMRI) dataset from neuroscience. Our results indicate that additional care should be taken when attributing criticality to real-world datasets. Copyright © 2023, The Authors. All rights reserved.

关键词： Criticality (nuclear fission)

Estimation of the main air pollutants from different biomasses under combustion atmospheres by artificial neural networks

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Chemosphere 2024年 352卷 141484页

作者： Monteiro, Thalyssa Oliveira Alves, Pedro Augusto Araújo da Silva de Almeida Nava Barradas Filho, Alex Oliveira Villa-Vélez, Harvey Alexander Cruz, Glauber Postgraduate Program in Mechanical Engineering (PPGMEC) Department of Mechanics and Materials Federal Institute of Education Science and Technology of Maranhão (IFMA) Maranhão São Luís Brazil Postgraduate Program in Computer Science and Computational Mathematics (PPG-CCMC) Department of Computer Science University of São Paulo (USP) São Carlos São Paulo Brazil Data Analysis and Artificial Intelligence Laboratory (DARTi) Department of Computational Engineering Federal University of Maranhão (UFMA) Maranhão São Luís Brazil Department of Chemical Engineering Federal University of Maranhão (UFMA) Maranhão São Luís Brazil Processes and Thermal Systems Laboratory (LPSisTer) Department of Mechanical Engineering Federal University of Maranhão (UFMA) Maranhão São Luís Brazil

The production of biofuels to be used as bioenergy under combustion processes generates some gaseous emissions (CO, CO2, NOx, SOx, and other pollutants), affecting living organisms and requiring careful assessments. H... 详细信息

The production of biofuels to be used as bioenergy under combustion processes generates some gaseous emissions (CO, CO₂, NO_x, SO_x, and other pollutants), affecting living organisms and requiring careful assessments. However, obtaining such information experimentally for data evaluation is costly and time-consuming and its in situ obtaining for regional biomasses (e.g., those from Northeast Brazil (NEB) is still a major challenge. This paper reports on the application of artificial neural networks (ANNs) for the prediction of the main air pollutants (CO, CO₂, NO, and SO₂) produced during the direct biomass combustion (N₂/O₂:80/20%) with the use of ultimate analysis (carbon, hydrogen, nitrogen, sulfur, and oxygen). 116 worldwide biomasses were used as input data, which is a relevant alternative to overcome the lack of experimental resources in NEB and obtain such information. Cross-validation was conducted with k-fold to optimize the ANNs and performance was analyzed with the use of statistical errors for accuracy assessments. The results showed an acceptable statistical performance for all architectures of ANNs, with 0.001–12.41% MAPE, 0.001–5.82 mg Nm⁻³ MAE, and 0.03–52.30 mg Nm⁻³ RMSE, highlighting the high precision of the emissions studied. On average, the differences between predicted and real values for CO, CO₂, NO, and SO₂ emissions from NEB biomasses were approximately 0.01%, 10⁻⁶%, 0.14%, and 0.05%, respectively. Pearson coefficient provided consistent results of concentration of the ultimate analysis in relation to the emissions studied and effectiveness of the test set in the developed models. © 2024 Elsevier Ltd

关键词： Brazilian northeastern Environmental statistics Evaluation metrics Gaseous emissions Predictive models Thermoconversion

Accurately predicting anticancer peptide using an ensemble of heterogeneously trained classifiers

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Informatics in Medicine Unlocked 2023年 42卷

作者： Azim, Sayed Mehedi Sabab, Noor Hossain Nuri Noshadi, Iman Alinejad-Rokny, Hamid Sharma, Alok Shatabda, Swakkhar Dehzangi, Iman Center for Computational and Integrative Biology Rutgers University Camden 08102 NJ United States Department of Computer Science and Engineering United International University Plot 2 United City Madani Avenue BaddaDhaka 1212 Bangladesh Department of Bioengineering University of California Riverside 92507 CA United States BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering The University of New South Wales (UNSW Sydney) Sydney NSW 2052 Australia UNSW Data Science Hub UNSW Sydney Sydney NSW 2052 Australia Health Data Analytics Program AI-enabled Processes Research Centre Macquarie University Sydney 2109 Australia Institute for Integrated and Intelligent Systems Griffith University Brisbane Australia Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama 230-0045 Japan Department of Computer Science Rutgers University Camden 08102 NJ United States

The use of therapeutic peptides for the treatment of cancer has received tremendous attention in recent years. Anticancer peptides (ACPs) are considered new anticancer drugs which have several advantages over chemistry-based drugs including high specificity, strong tumor penetration capacity, and low toxicity level for normal cells. Due to the rise of experimentally verified bioactive peptides, several in silico approaches became imperative for the investigation of the characteristics of ACPs. In this paper, we proposed a new machine learning tool named iACP-RF that uses a combination of several sequence-based features and an ensemble of three heterogeneously trained Random Forest classifiers to accurately predict anticancer peptides. Experimental results show that our proposed model achieves an accuracy of 75.9% which outperforms other state-of-the-art methods by a significant margin. We also achieve 0.52, 75.6%, and 76.2% in terms of Matthews Correlation Coefficient (MCC), Sensitivity, and Specificity, respectively. iACP-RF as a standalone tool and its source code are publicly available at: https://***/MLBC-lab/iACP-RF. © 2023 The Authors

关键词： Anticancer peptides Ensemble learning Feature extraction Heterogeneous classifiers Machine learning Random Forest

Biases in inverse Ising estimates of near-critical behavior

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Physical Review E 2023年第1期108卷 014109-014109页

作者： Maximilian B. Kloucek Thomas Machon Shogo Kajimura C. Patrick Royall Naoki Masuda Francesco Turci School of Physics HH Wills Physics Laboratory University of Bristol Tyndall Avenue Bristol BS8 1TL United Kingdom Bristol Centre for Functional Nanomaterials HH Wills Physics Laboratory University of Bristol Tyndall Avenue Bristol BS8 1TL United Kingdom Faculty of Information and Human Sciences Kyoto Institute of Technology Kyoto 606-8585 Japan Gulliver UMR CNRS 7083 ESPCI Paris Université PSL 75005 Paris France Department of Mathematics State University of New York at Buffalo Buffalo New York 14260-2900 USA Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo Buffalo New York 14260-5030 USA

Inverse Ising inference allows pairwise interactions of complex binary systems to be reconstructed from empirical correlations. Typical estimators used for this inference, such as pseudo-likelihood maximization (PLM), are biased. Using the Sherrington-Kirkpatrick model as a benchmark, we show that these biases are large in critical regimes close to phase boundaries, and they may alter the qualitative interpretation of the inferred model. In particular, we show that the small-sample bias causes models inferred through PLM to appear closer to criticality than one would expect from the data. data-driven methods to correct this bias are explored and applied to a functional magnetic resonance imaging data set from neuroscience. Our results indicate that additional care should be taken when attributing criticality to real-world data sets.

关键词： Critical phenomena Cortical networks Spin glasses Functional magnetic resonance imaging Ising model

Modeling state-transition dynamics in resting-state brain signals by the hidden Markov and Gaussian mixture models

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arXiv 2020年

作者： Ezaki, Takahiro Himeno, Yu Watanabe, Takamitsu Masuda, Naoki Research Center for Advanced Science and Technology The University of Tokyo 4-6-1 Komaba Meguro-ku Tokyo153-8904 Japan PRESTO JST 4-1-8 Honcho Kawaguchi Saitama332-0012 Japan Department of Aeronautics and Astronautics The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo113-8656 Japan Laboratory for Cognition Circuit Dynamics RIKEN Centre for Brain Science Saitama351-0198 Japan International Research Center for Neurointelligence The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo113-0033 Japan Department of Mathematics State University of New York at Buffalo BuffaloNY14260-2900 United States Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo BuffaloNY14260-5030 United States

Recent studies have proposed that one can summarize brain activity into dynamics among a relatively small number of hidden states and that such an approach is a promising tool for revealing brain function. Hidden Markov models (HMMs) are a prevalent approach to inferring such neural dynamics among discrete brain states. However, the impact of assuming Markovian structure in neural time series data has not been sufficiently examined. Here, to address this situation and examine the performance of the HMM, we compare the model with the Gaussian mixture model (GMM), which is with no temporal regularization and thus a statistically simpler model than the HMM, by applying both models to synthetic time series generated from empirical resting-state functional magnetic resonance imaging (fMRI) data. We compared the GMM and HMM for various sampling frequencies, lengths of recording per participant, numbers of participants, and numbers of independent component signals. We find that the HMM attains a better accuracy of estimating the hidden state than the GMM in a majority of cases. However, we also find that the accuracy of the GMM is comparable to that of the HMM under the condition that the sampling frequency is reasonably low (e.g., TR = 2.88 or 3.60 s) or the data is relatively short. These results suggest that the GMM can be a viable alternative to the HMM for investigating hidden-state dynamics under this condition. Copyright © 2020, The Authors. All rights reserved.

关键词： Hidden Markov models