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arXiv 2022年

作者： Li, Wenjie Li, Juncheng Gao, Guangwei Deng, Weihong Zhou, Jiantao Yang, Jian Qi, Guo-Jun The Intelligent Visual Information Perception Laboratory Institute of Advanced Technology Nanjing University of Posts and Telecommunications Nanjing210046 China The Provincial Key Laboratory for Computer Information Processing Technology Soochow University Suzhou215006 China The School of Communication and Information Engineering Shanghai University Shanghai200444 China Jiangsu Key Laboratory of Image and Video Understanding for Social Safety Nanjing University of Science and Technology Nanjing210094 China The Pattern Recognition and Intelligent System Laboratory School of Artificial Intelligence Beijing University of Posts and Telecommunications Beijing100876 China The State Key Laboratory of Internet of Things for Smart City Department of Computer and Information Science Faculty of Science and Technology University of Macau 999078 China The School of Computer Science and Technology Nanjing University of Science and Technology Nanjing210094 China The Research Center for Industries of the Future The School of Engineering Westlake University Hangzhou310024 China OPPO Research SeattleWA98101 United States

Recently, Transformer-based methods have shown impressive performance in single image super-resolution (SISR) tasks due to the ability of global feature extraction. However, the capabilities of Transformers that need to incorporate contextual information to extract features dynamically are neglected. To address this issue, we propose a lightweight Cross-receptive Focused Inference Network (CFIN) that consists of a cascade of CT Blocks mixed with CNN and Transformer. Specifically, in the CT block, we first propose a CNN-based Cross-Scale Information Aggregation Module (CIAM) to enable the model to better focus on potentially helpful information to improve the efficiency of the Transformer phase. Then, we design a novel Cross-receptive Field Guided Transformer (CFGT) to enable the selection of contextual information required for reconstruction by using a modulated convolutional kernel that understands the current semantic information and exploits the information interaction within different self-attention. Extensive experiments have shown that our proposed CFIN can effectively reconstruct images using contextual information, and it can strike a good balance between computational cost and model performance as an efficient model. Source codes will be available at https://***/IVIPLab/CFIN. Copyright © 2022, The Authors. All rights reserved.

关键词： Semantics

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Learning tubule-sensitive CNNs for pulmonary airway and artery-vein segmentation in CT

arXiv

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arXiv 2020年

作者： Qin, Yulei Zheng, Hao Gu, Yun Huang, Xiaolin Yang, Jie Wang, Lihui Yao, Feng Zhu, Yue-Min Yang, Guang-Zhong Institute of Image Processing and Pattern Recognition Institute of Medical Robotics Shanghai Jiao Tong University Shanghai China Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province School of Computer Science and Technology Guizhou University Guiyang China Department of Thoracic Surgery Shanghai Chest Hospital Shanghai Jiao Tong University Shanghai China Université de Lyon INSA Lyon CREATIS CNRS INSERM UMR 5220 VilleurbanneU1206 France Institute of Medical Robotics School of Biomedical Engineering Shanghai Jiao Tong University Shanghai China

Training convolutional neural networks (CNNs) for segmentation of pulmonary airway, artery, and vein is challenging due to sparse supervisory signals caused by the severe class imbalance between tubular targets and background. We present a CNNs-based method for accurate airway and artery-vein segmentation in non-contrast computed tomography. It enjoys superior sensitivity to tenuous peripheral bronchioles, arterioles, and venules. The method first uses a feature recalibration module to make the best use of features learned from the neural networks. Spatial information of features is properly integrated to retain relative priority of activated regions, which benefits the subsequent channel-wise recalibration. Then, attention distillation module is introduced to reinforce representation learning of tubular objects. Fine-grained details in high-resolution attention maps are passing down from one layer to its previous layer recursively to enrich context. Anatomy prior of lung context map and distance transform map is designed and incorporated for better artery-vein differentiation capacity. Extensive experiments demonstrated considerable performance gains brought by these components. Compared with state-of-the-art methods, our method extracted much more branches while maintaining competitive overall segmentation performance. Codes and models are available at http://***/News/56. © 2020, CC BY.

关键词： Computerized tomography

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AIM 2020 Challenge on image Extreme Inpainting 16th

AIM 2020 Challenge on Image Extreme Inpainting

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Workshops held at the 16th European Conference on Computer Vision, ECCV 2020

作者： Ntavelis, Evangelos Romero, Andrés Bigdeli, Siavash Timofte, Radu Hui, Zheng Wang, Xiumei Gao, Xinbo Shin, Chajin Kim, Taeoh Son, Hanbin Lee, Sangyoun Li, Chao Li, Fu He, Dongliang Wen, Shilei Ding, Errui Bai, Mengmeng Li, Shuchen Zeng, Yu Lin, Zhe Yang, Jimei Zhang, Jianming Shechtman, Eli Lu, Huchuan Zeng, Weijian Ni, Haopeng Cai, Yiyang Li, Chenghua Xu, Dejia Wu, Haoning Han, Yu Nadim, Uddin S. M. Jang, Hae Woong Ahmed, Soikat Hasan Yoon, Jungmin Jung, Yong Ju Li, Chu-Tak Liu, Zhi-Song Wang, Li-Wen Siu, Wan-Chi Lun, Daniel P. K. Suin, Maitreya Purohit, Kuldeep Rajagopalan, A.N. Narang, Pratik Mandal, Murari Chauhan, Pranjal Singh Computer Vision Lab ETH Zürich Zürich Switzerland CSEM Neuchâtel Switzerland School of Electronic Engineering Xidian University Xi’an China Image and Video Pattern Recognition Laboratory School of Electrical and Electronic Engineering Yonsei University Seoul Korea Republic of Baidu Inc. Beijing China Beijing China Dalian University of Technology Dalian China Adobe San Jose United States Rensselaer Polytechnic Institute Troy United States Peking University Beijing China Lab Gachon University Seongnam Korea Republic of Centre for Multimedia Signal Processing Department of Electronic and Information Engineering The Hong Kong Polytechnic University Hong Kong China Indian Institute of Technology Madras Chennai India BITS Pilani Pilani India MNIT Jaipur Jaipur India

ISBN: (纸本)9783030670696

This paper reviews the AIM 2020 challenge on extreme image inpainting. This report focuses on proposed solutions and results for two different tracks on extreme image inpainting: classical image inpainting and semantically guided image inpainting. The goal of track 1 is to inpaint large part of the image with no supervision. Similarly, the goal of track 2 is to inpaint the image by having access to the entire semantic segmentation map of the input. The challenge had 88 and 74 participants, respectively. 11 and 6 teams competed in the final phase of the challenge, respectively. This report gauges current solutions and set a benchmark for future extreme image inpainting methods. © 2020, Springer Nature Switzerland AG.

关键词： Semantic Segmentation

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Random Fourier features via fast surrogate leverage weighted sampling

arXiv

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arXiv 2019年

作者： Liu, Fanghui Huang, Xiaolin Chen, Yudong Yang, Jie Suykens, Johan A.K. Department of Electrical Engineering [ESAT-STADIUS KU Leuven Belgium Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China Institute of Medical Robotics Shanghai Jiao Tong University China School of Operations Research and Information Engineering Cornell University United States

In this paper, we propose a fast surrogate leverage weighted sampling strategy to generate refined random Fourier features for kernel approximation. Compared to the current state-of-the-art method that uses the leverage weighted scheme (Li et al. 2019), our new strategy is simpler and more effective. It uses kernel alignment to guide the sampling process and it can avoid the matrix inversion operator when we compute the leverage function. Given n observations and s random features, our strategy can reduce the time complexity for sampling from O(ns2 + s3) to O(ns2), while achieving comparable (or even slightly better) prediction performance when applied to kernel ridge regression (KRR). In addition, we provide theoretical guarantees on the generalization performance of our approach, and in particular characterize the number of random features required to achieve statistical guarantees in KRR. Experiments on several benchmark datasets demonstrate that our algorithm achieves comparable prediction performance and takes less time cost when compared to (Li et al. 2019). Copyright © 2019, The Authors. All rights reserved.

关键词： Benchmarking

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Local topology preservation for vascular centerline matching using a hybrid mixture model

Local topology preservation for vascular centerline matching...

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IEEE Symposium on Nuclear Science (NSS/MIC)

作者： Siming Bayer Zhiwei Zhai Maddalena Strumia Xiaoguang Tong Ying Gao Marius Staring Berend Stoel Martin Ostermeier Rebecca Fahrig Arya Nabavi Andreas Maier Nishant Ravikumar Pattern Recognition Lab Friedrich-Alexander Universtiy Erlangen Germany Division of Image Processing Leiden University Medical Center Leiden Netherlands Siemens Healthcare GmbH Forchheim Germany Tianjin Huanhu Hospital Tianjin China Siemens Healthineers Ltd Beijing China Department of Neurosurgery Nordstadt Hospital KRH Hannover Germany

ISBN: (数字)9781728141640

ISBN: (纸本)9781728141657

Non-rigid registration is essential for a wide range of clinical applications, such as intraoperative image-guidance and postoperative follow-up assessment, and longitudinal image analysis for disease diagnosis and monitoring. Vascular structures are a rich descriptor of the organ deformation, since it permeates through all organs within body. As vasculature differs in size, shape and topology, following surgical intervention/treatment or due to disease progression, non-rigid vessel matching remains a challenging task. Recently, hybrid mixture models (HdMM) have been applied to tackle this challenge, and demonstrate significant improvements in terms of accuracy and robustness relative to the state-of-the-art. However, the smoothness constraint enforced on the deformation field with this approach only accounts for the global topology of the vasculature, resulting in a reduced capacity to accurately match localized changes to vascular structures, and preserve local topology. In this work, we proposed a modified version of HdMM by formulating an adaptive kernel, to enforce a local smoothness constraint on the deformation field, henceforth referred to as HdMMad. The proposed HdMMad framework is evaluated with cerebral and pulmonary vasculature, acquired retrospectively. The registration results for both data sets demonstrate that the proposed approach outperforms registration algorithms also designed to preserve local topology. Using HdMMad, around 80% of the initial registration error was reduced, for both data sets.

关键词： Topology Kernel Mixture models Strain Robustness Task analysis Magnetohydrodynamics

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Sparse Kernel Regression with Coefficient-based `q−regularization

引用

Journal of Machine Learning Research 2019年 20卷

作者： Shi, Lei Huang, Xiaolin Feng, Yunlong Suykens, Johan A.K. Shanghai Key Laboratory for Contemporary Applied Mathematics School of Mathematical Sciences Fudan University Shanghai China Institute of Image Processing and Pattern Recognition Institute of Medical Robotics Shanghai Jiao Tong University MOE Key Laboratory of System Control and Information Processing Shanghai China Department of Mathematics and Statistics State University of New York at Albany New York United States Department of Electrical Engineering ESAT-STADIUS KU Leuven Kasteelpark Arenberg 10 LeuvenB-3001 Belgium

In this paper, we consider the `q−regularized kernel regression with 0 q−penalty term over a linear span of features generated by a kernel function. We study the asymptotic behavior of the algorithm under the framework of learning theory. The contribution of this paper is two-fold. First, we derive a tight bound on the `2−empirical covering numbers of the related function space involved in the error analysis. Based on this result, we obtain the convergence rates for the `1−regularized kernel regression which is the best so far. Second, for the case 0 ©c 2019 Lei Shi, Xiaolin Huang, Yunlong Feng, and Johan A.K. Suykens.

关键词： Regression analysis

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An improved convex programming model for the inverse problem in intensity-modulated radiation therapy

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International Journal of Performability Engineering 2018年第5期14卷 871-884页

作者： Lan, Yihua Zhang, Xingang Zhang, Jianyang Wang, Yang Hung, Chih-Cheng School of Computer and Information Technology Nanyang Normal University Nanyang473061 China Institute of Image Processing and Pattern Recognition Nanyang Normal University Nanyang473061 China Radiology Department Central Hospital of Nanyang Nanyang473061 China Laboratory for Machine Vision and Security Research College of Computing and Software Engineering Kennesaw State University - Marietta Campus 1100 South Marietta Parkway MariettaGA30067-2896 United States

Intensity modulated radiation therapy technology (IMRT) is one of the main approaches in cancer treatment because it can guarantee the killing of cancer cells while optimally protecting normal tissue from complications. Inverse planning, which is the core component of the entire IMRT system, is mainly based on accurate mathematical modeling and associated fast solving methods. In inverse planning, the fluence map optimization, which considers the multi-leaf collimator (MLC) modulation, is the current research focus. Although the hitting constrain problem with the unidirectional movement of leaf-sweeping has been solved, our goal is to solve the hitting constrain problem with the bidirectional movement of leaf-sweeping. In this study, we propose a non-synchronized type to solve the hitting constrain problem with the bidirectional movement of leaf-sweeping schemes for IMRT. In solving this problem, a new mathematical model is proposed under the framework of convex programming. The advantage of the convex model is to avoid the uncertainty and inaccuracy that occurs in the non-convex programming solving process. Experimental results for two clinical testing cases show that under the same condition of total number of monitoring units, the new proposed model produces better dose distribution than those of the total variance and quadratic models. © 2018 Totem Publisher, Inc. All rights reserved.

关键词： Convex optimization

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NCEM: Network structural similarity metric-based clustering for noisy cryo-EM single particle images

NCEM: Network structural similarity metric-based clustering ...

引用

Chinese Automation Congress

作者： Yin Shuo Biao Zhang Hong-Bin Shen Yang Yang Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Department of Computer Science Shanghai Jiao Tong University Shanghai China

Cryo-EM single particle image reconstruction is currently a powerful technique for revealing the structure of biomacromolecules. Compared to traditional structural biology techniques like X-Ray, it requires fewer restrictions on specimens and is highly efficient with image processing tools. In this single particle reconstruction protocol, the ultimate goal is to identify different particle projection orientations. Since the picked single particle images are highly noisy, clustering is an important step to refrain noise by dividing images with similar projection angles into groups and averaging these images. The goal of clustering analysis is to assign similar particles into same class, so similarity measurement between particles is an important part in all clustering algorithms. Directly measuring the similarity of two particle images will be unreliable due to their low SNR. In this study, we propose a novel network structural similarity metric-based clustering algorithm NCEM for clustering the single particle images. We first construct a complex network for all particle images, where each node represents a particle. Then calculating the similarity between two nodes using structural similarity. This new network-based single particle image similarity metric has advantages over direct measurement for its noise resistance by using the structural information of the network. Our experiments on both artificial and experimental datasets demonstrate its effectiveness.

关键词： Cryo-EM Single particle image clustering Complex network Structural similarity

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REFUGE2 CHALLENGE: A TREASURE TROVE FOR MULTI-DIMENSION ANALYSIS AND EVALUATION IN GLAUCOMA SCREENING

arXiv

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arXiv 2022年

作者： Fang, Huihui Li, Fei Wu, Junde Fu, Huazhu Sun, Xu Son, Jaemin Yu, Shuang Zhang, Menglu Yuan, Chenglang Bian, Cheng Lei, Baiying Zhao, Benjian Xu, Xinxing Li, Shaohua Fumero, Francisco Sigut, José Almubarak, Haidar Bazi, Yakoub Guo, Yuanhao Zhou, Yating Baid, Ujjwal Innani, Shubham Guo, Tianjiao Yang, Jie Orlando, José Ignacio Bogunović, Hrvoje Zhang, Xiulan Xu, Yanwu The REFUGE2 Challenge Australia State Key Laboratory of Ophthalmology Zhongshan Ophthalmic Center Sun Yat-Sen University Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science Guangzhou China Intelligent Healthcare Unit Baidu Inc. Beijing China The Institute of High Performance Computing Agency for Science Technology and Research Singapore Yatiris Group PLADEMA Institute CONICET UNICEN Tandil Argentina Christian Doppler Lab for Artificial Intelligence in Retina Department of Ophthalmology and Optometry Medical University of Vienna Vienna Austria VUNO Inc Seoul Korea Republic of Tencent HealthCare Tencent Shenzhen China Computer Vision Institute College of Computer Science and Software Engineering of Shenzhen University Shenzhen China School of Biomedical Engineering Health Science Center Shenzhen University China Xiaohe Healthcare ByteDance Guangdong Guangzhou510000 China School of Biomedical Engineering Shenzhen University China College of Computer Science & Software Engineering Shenzhen University China Department of Computer Science and Systems Engineering Universidad de La Laguna Spain Saudi Electronic University Saudi Arabia King Saud University Saudi Arabia Institute of Automation Chinese Academy of Sciences Beijing China University of Chinese Academy of Sciences Beijing China SGGS Institute of Engineering and Technology India Institute of Medical Robotics Shanghai Jiao Tong University China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China

With the rapid development of artificial intelligence (AI) in medical image processing, deep learning in color fundus photography (CFP) analysis is also evolving. Although there are some open-source, labeled datasets of CFPs in the ophthalmology community, large-scale datasets for screening only have labels of disease categories, and datasets with annotations of fundus structures are usually small in size. In addition, labeling standards are not uniform across datasets, and there is no clear information on the acquisition device. Here we release a multi-annotation, multi-quality, and multi-device color fundus image dataset for glaucoma analysis on an original challenge-Retinal Fundus Glaucoma Challenge 2nd Edition (REFUGE2). The REFUGE2 dataset contains 2000 color fundus images with annotations of glaucoma classification, optic disc/cup segmentation, as well as fovea localization. Meanwhile, the REFUGE2 challenge sets three sub-tasks of automatic glaucoma diagnosis and fundus structure analysis and provides an online evaluation framework. Based on the characteristics of multi-device and multi-quality data, some methods with strong generalizations are provided in the challenge to make the predictions more robust. This shows that REFUGE2 brings attention to the characteristics of real-world multi-domain data, bridging the gap between scientific research and clinical application. © 2022, CC BY-NC-ND.

关键词： Color

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Overexposure correction by mixed one-bit compressive sensing for C-Arm CT 1

引用

Workshops on image processing for the medicine, 2017

作者： Huang, Xiaolin Xia, Yan Huang, Yixing Hornegger, Joachim Maier, Andreas Pattern Recognition Lab Friedrich-Alexander-University Erlangen-Nürnberg Germany Department of Radiology Stanford University United States Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China

ISBN: (数字)9783662543450

ISBN: (纸本)9783662543443

This paper proposes a novel method to deal with overexposure for C-arm CT reconstruction. The proposed method is based on recent progress of one bit compressive sensing (1bit-CS), which is to recover sparse signals from sign measurements. Overexposure could be regarded as a kind of sign information, thus the application of 1bit-CS to overexposure correction in CT reconstruction is expected. This method is evaluated on a phantom and its promising performance implies potential application on clinical data. © Springer-Verlag GmbH Deutschland 2017.

关键词： Compressed sensing

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