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Multi-Label Annotation of Chest Abdomen Pelvis Computed Tomography Text Reports Using Deep Learning

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arXiv 2021年

作者： D'Anniballe, Vincent M. Tushar, Fakrul I. Faryna, Khrystyna Han, Songyue Mazurowski, Maciej A. Rubin, Geoffrey D. Lo, Joseph Y. Center for Virtual Imaging Trials Carl E. Ravin Advanced Imaging Laboratories Department of Radiology Duke University School of Medicine 2424 Erwin Rd. Ste. 302 DurhamNC27705 United States Department of Electrical & Computer Engineering Pratt School of Engineering Duke University DurhamNC United States Erasmus+ Joint Master in Medical Imaging and Applications University of Girona Girona Spain School of Software Engineering South China University of Technology Guangdong Guangzhou China Department of Medical Imaging University of Arizona College of Medicine TucsonAZ United States

Background: There is progress to be made in building artificially intelligent systems to detect abnormalities that are not only accurate but can handle the true breadth of findings that radiologists encounter in body (chest, abdomen, and pelvis) Computed Tomography (CT). Currently, the major bottleneck for developing multi-disease classifiers is a lack of manually annotated data. The purpose of this work was to develop high throughput multi-label annotators for body CT reports that can be applied across a variety of abnormalities, organs, and disease states thereby mitigating the need for human annotation. Methods: We used a dictionary approach to develop rule-based algorithms (RBA) for extraction of disease labels from radiology text reports. We targeted three organ systems (lungs/pleura, liver/gallbladder, kidneys/ureters) with four diseases per system based on their prevalence in our dataset. To expand the algorithms beyond pre-defined keywords, attention-guided recurrent neural networks (RNN) were trained using the RBA-extracted labels to classify reports as being positive for one or more diseases or normal for each organ system. Alternative effects on disease classification performance were evaluated using random initialization or pre-trained embedding as well as different sizes of training datasets. The RBA was tested on a subset of 2,158 manually labeled reports and performance was reported as accuracy and F-score. The RNN was tested against a test set of 48,758 reports labeled by RBA and performance was reported as area under the receiver operating characteristic curve (AUC), with 95% CIs calculated using the DeLong method. Results: Manual validation of the RBA confirmed 91%-99% accuracy across the 15 different labels. Our models extracted disease labels from 261,229 radiology reports of 112,501 unique subjects. Pre-trained models outperformed random initialization across all diseases. As the training dataset size was reduced, performance was robust except f

关键词： computerized tomography

Dynamic Pricing based Near-Optimal Resource Allocation for Elastic Edge Offloading

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arXiv 2024年

作者： Xia, Yun Xue, Hai Zhang, Di Mumtaz, Shahid Xu, Xiaolong Rodrigues, Joel J.P.C. School of Optical-Electrical and Computer Engineering University of Shanghai for Science and Technology Shanghai200093 China School of Electrical and Information Engineering Zhengzhou University the Henan International Joint Laboratory of Intelligent Health Information System The National Telemedicine Center The National Engineering Laboratory for Internet Medical Systems and Applications Zhengzhou450001 China Department of Engineering Nottingham Trent University NottinghamNG1 4FQ United Kingdom The Department of Electronic Engineering Kyung Hee University Gyeonggi-do Yongin-si17104 Korea Republic of School of Software Nanjing University of Information Science and Technology Nanjing210044 China Amazonas State University AM Manaus Brazil

In mobile edge computing (MEC), task offloading can significantly reduce task execution latency and energy consumption of end user (EU). However, edge server (ES) resources are limited, necessitating efficient allocation to ensure the sustainable and healthy development for MEC systems. In this paper, we propose a dynamic pricing mechanism based near-optimal resource allocation for elastic edge offloading. First, we construct a resource pricing model and accordingly develop the utility functions for both EU and ES, the optimal pricing model parameters are derived by optimizing the utility functions. In the meantime, our theoretical analysis reveals that the EU’s utility function reaches a local maximum within the search range, but exhibits barely growth with increased resource allocation beyond this point. To this end, we further propose the Dynamic Inertia and Speed-Constrained particle swarm optimization (DISC-PSO) algorithm, which efficiently identifies the near-optimal resource allocation. Comprehensive simulation results validate the effectiveness of DISC-PSO, demonstrating that it significantly outperforms existing schemes by reducing the average number of iterations to reach a near-optimal solution by 92.11%, increasing the final user utility function value by 0.24%, and decreasing the variance of results by 95.45%. Copyright © 2024, The Authors. All rights reserved.

关键词： Particle swarm optimization (PSO)

The 5th International Conference on Biomedical engineering and Biotechnology (ICBEB 2016) Abstracts

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BMC MEDICAL IMAGING 2016年第SUPPL 1期16卷 65-65页

作者： [Anonymous] Department of MRI Shandong Medical Imaging Research Institute Affiliated to Shandong University Jinan Shandong 250021 People’s Republic of China Department of Interventional Radiology Shandong Provincial Hospital Affiliated to Shandong University Jinan Shandong 250021 People’s Republic of China College of Information Science and Technology Engr. Research Center of Digitized Textile & Fashion Tech. for Ministry of Education Donghua University Shanghai 201620 China Intelligent multimedia information processing Lab College of Software Northeastern University Shenyang Liaoning Province 110004 China Institute of Biomedical and Health Engineering Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences Shenzhen 518055 China School of Computer Science and Technology Nanjing Normal University Nanjing China Department of Electrical Engineering The City College of New York CUNY New York USA Jiangsu Key Laboratory of 3D Printing Equipment and Manufacturing Nanjing China School of Electronic Science and Engineering Nanjing University Nanjing Jiangsu 210046 China College of Engineering Nanyang Technological University Singapore 639798 Singapore School of Electronic Information Shanghai Dianji University Shanghai China School of Natural Sciences and Mathematics Shepherd University Shepherdstown WV 25443 USA Davis College of Agriculture Natural Resources and Design West Virginia University Morgantown WV 26505 USA State Key Laboratory of Millimeter Waves Southeast University Nanjing 210096 China Center of Medical Physics and Technology Hefei Institutes of Physical Science Chinese Academy of Sciences Hefei China College of Agricultural and Life Sciences University of Florida Gainesville FL 32611 USA Courant Institute of Mathematical Sciences New York University New York NY 10012 USA Translational Imaging Division & MRI Unit Columbia University and New York State Psychiatric Institute New York NY 10032 USA Guangxi Key Laboratory of Manufacturing System & Adv

Proceedings of the 2016 International Conference on Image Pr...

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Foreword

Proceedings of the 2016 International Conference on Image Processing, computer Vision, and Pattern Recognition, IPCV 2016 2016年

作者： Abd-Wahab, Mohd Helmy Al-Bakry, Abbas Al-Holou, Nizar Arabnia, Hamid R. Bhattacharya, Mahua Martinez Castillo, Juan Jose Daimi, Kevin Deligiannidis, Leonidas Djoudi, Lamia Atma Duong, Trung Eshaghian-Wilner, Mary Mehrnoosh Gravvanis, George A. Huang, Ruizhu Jandieri, George Kim, Byung-Gyu Kim, Tai-hoon Korovin, Iakov Lai, Guoming Lee, Hyo Jong Bin Mansor, Muhammad Naufal Marsh, Andrew Mostafaeipour, Ali Park, James J. Patil, Shashikant Ponalagusamy, R. Schaefer, Gerald Singh, Akash Solo, Ashu M.G. Swee, Sim Kok Thomas, Jaya Tinetti, Fernando G. Vladimir, Hahanov Wang, Shiuh-Jeng Yang, Mary Yoe, Hyun You, Jane Zhao, Wenbing Department of Computer Engineering University Tun Hussein Onn Malaysia Malaysia University of IT and Communications Baghdad Iraq Electrical and Computer Engineering Department IEEE/SEM-Computer Chapter University of Detroit Mercy DetroitMI United States University of Georgia United States ABV Indian Institute of Information Technology and Management MHRD Government of India India Acantelys Alan Turing Nikola Tesla Research Group and GIPEB Universidad Nacional Abierta Venezuela Computer Science and Software Engineering Programs Department of Mathematics Computer Science and Software Engineering University of Detroit Mercy DetroitMI United States Department of Computer Information Systems Wentworth Institute of Technology BostonMA United States Synchrone Technologies France Rutgers University State University of New Jersey New Jersey United States University of Southern California California United States Electrical Engineering University of California Los Angeles Los Angeles [UCLA CA United States Advanced Scientific Computing Applied Math and Applications Research Group Applied Mathematics and Numerical Computing and Department of ECE School of Engineering Democritus University of Thrace Xanthi Greece Texas Advanced Computing Center University of Texas AustinTX United States Georgian Technical University Tbilisi Georgia Institute of Cybernetics Georgian Academy of Science Georgia Multimedia Processing CommunicationsLab.[MPCL Department of Computer Science and Engineering College of Engineering SunMoon University Korea Republic of School of Information and Computing Science University of Tasmania Australia Southern Federal University Russia Computer Science and Technology Sun Yat-Sen University Guangzhou China Center for Advanced Image and Information Technology Division of Computer Science and Engineering Chonbuk National University Korea Republic of Faculty of Engineering Technology Kampus Uniciti Alam Universiti Malaysia Perlis UniMAP Malaysi

Towards practical and massively parallel quantum computing emulation for quantum chemistry

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arXiv 2023年

作者： Shang, Honghui Fan, Yi Shen, Li Guo, Chu Liu, Jie Duan, Xiaohui Li, Fang Li, Zhenyu Institute of Computing Technology Chinese Academy of Sciences Beijing China Hefei National Laboratory University of Science and Technology of China Hefei230088 China Key Laboratory of Low-Dimensional Quantum Structures and Quantum Control of Ministry of Education Department of Physics Synergetic Innovation Center for Quantum Effects and Applications Hunan Normal University Changsha410081 China School of Software Shandong University Jinan China National Research Center of Parallel Computer Engineering and Technology Beijing China

Quantum computing is moving beyond its early stage and seeking for commercial applications in chemical and biomedical sciences. In the current noisy intermediate-scale quantum computing era, quantum resource is too scarce to support these explorations. Therefore, it is valuable to emulate quantum computing on classical computers for developing quantum algorithms and validating quantum hardware. However, existing simulators mostly suffer from the memory bottleneck so developing the approaches for large-scale quantum chemistry calculations remains challenging. Here we demonstrate a high-performance and massively parallel variational quantum eigensolver (VQE) simulator based on matrix product states, combined with embedding theory for solving large-scale quantum computing emulation for quantum chemistry on HPC platforms. We apply this method to study the torsional barrier of ethane and the quantification of the protein-ligand interactions. Our largest simulation reaches 1000 qubits, and a performance of 216.9 PFLOPS is achieved on a new Sunway supercomputer, which sets the state-of-the-art for quantum computing emulation for quantum chemistry. © 2023, CC BY.

关键词： Computational chemistry

SmartEdge: Smart Healthcare End-to-End Integrated Edge and Cloud Computing System for Diabetes Prediction Enabled by Ensemble Machine Learning

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SmartEdge: Smart Healthcare End-to-End Integrated Edge and C...

IEEE International Conference on Cloud Computing Technology and Science (CloudCom)

作者： Alain Hennebelle Qifan Dieng Leila Ismail Rajkumar Buyya Independent Researcher in Information Technology Systems and Artificial Intelligence Applications Abu Dhabi United Arab Emirates Cloud Computing and Distributed Systems (CLOUDS) Lab School of Computing and Information Systems University of Melbourne Melbourne Australia Department of Computer Science and Software Engineering Intelligent Distributed Computing and Systems (INDUCE) Lab College of Information Technology Emirates Center for Mobility Research National Water and Energy Center UAE University Al-Ain Abu Dhabi United Arab Emirates

ISBN: (数字)9798331507589

ISBN: (纸本)9798331507596

The Internet of Things (IoT) revolutionizes smart city domains such as healthcare, transportation, industry, and education. The Internet of Medical Things (IoMT) is gaining prominence, particularly in smart hospitals and Remote Patient Monitoring (RPM). The vast volume of data generated by IoMT devices should be analyzed in real-time for health surveillance, prognosis, and prediction of diseases. Current approaches relying on Cloud computing to provide the necessary computing and storage capabilities do not scale for these latency-sensitive applications. Edge computing emerges as a solution by bringing cloud services closer to IoMT devices. This paper introduces SmartEdge, an AI-powered smart healthcare end-to-end integrated edge and cloud computing system for diabetes prediction. This work addresses latency concerns and demonstrates the efficacy of edge resources in healthcare applications within an end-to-end system. The system leverages various risk factors for diabetes prediction. We propose an Edge and Cloud-enabled framework to deploy the proposed diabetes prediction models on various configurations using edge nodes and main cloud servers. Performance metrics are evaluated using, latency, accuracy, and response time. By using ensemble machine learning voting algorithms we can improve the prediction accuracy by 5% versus a single model prediction.

关键词： Cloud computing Accuracy Smart cities Computational modeling Transportation industry Surveillance Machine learning Predictive models Diabetes Time factors

A Brief Review of Explainable Artificial Intelligence in Healthcare

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arXiv 2023年

作者： Sadeghi, Zahra Alizadehsani, Roohallah Cifci, Mehmet Akif Kausar, Samina Rehman, Rizwan Mahanta, Priyakshi Bora, Pranjal Kumar Almasri, Ammar Alkhawaldeh, Rami S. Hussain, Sadiq Alatas, Bilal Shoeibi, Afshin Moosaei, Hossein Hladík, Milan Nahavandi, Saeid Pardalos, Panos M. Institute for Big Data Analytics Faculty of Computer Science Dalhousie University Canada Deakin University Geelong Australia The Institute of Computer Technology Tu Wien University Vienna1040 Austria University of Kotli Azad Jammu and Kashmir Azad Kashmir Kotli Pakistan Centre for Computer Science and Applications Dibrugarh University Assam India Department of Management Information Sys Al-Balqa Applied University Salt19117 Jordan Department of Computer Information Systems The University of Jordan Aqaba77110 Jordan Examination Branch Dibrugarh University Assam Dibrugarh India Department of Software Eng. Firat University Elazig23100 Turkey Data Science and Computational Intelligence Institute University of Granada Spain Department of Informatics Faculty of Science Jan Evangelista Purkyně University in Ústí nad Labem Czech Republic Department of Applied Mathematics School of Computer Science Faculty of Mathematics and Physics Charles University Prague Czech Republic Harvard Paulson School of Engineering and Applied Sciences Harvard University AllstonMA02134 United States Center for Applied Optimization Department of Industrial and Systems Engineering University of Florida Gainesville32611 United States

XAI refers to the techniques and methods for building AI applications which assist end users to interpret output and predictions of AI models. Black box AI applications in high-stakes decision-making situations, such as medical domain have increased the demand for transparency and explainability since wrong predictions may have severe consequences. Model explainability and interpretability are vital successful deployment of AI models in healthcare practices. AI applications' underlying reasoning needs to be transparent to clinicians in order to gain their trust. This paper presents a systematic review of XAI aspects and challenges in the healthcare domain. The primary goals of this study are to review various XAI methods, their challenges, and related machine learning models in healthcare. The methods are discussed under six categories: Features-oriented methods, global methods, concept models, surrogate models, local pixel-based methods, and human-centric methods. Most importantly, the paper explores XAI role in healthcare problems to clarify its necessity in safety-critical applications. The paper intends to establish a comprehensive understanding of XAI-related applications in the healthcare field by reviewing the related experimental results. To facilitate future research for filling research gaps, the importance of XAI models from different viewpoints and their limitations are investigated. © 2023, CC BY-NC-ND.

关键词： Decision making

A Brief Review of Explainable Artificial Intelligence in Healthcare

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SSRN

SSRN 2023年

作者： Sadeghi, Zahra Alizadehsani, Roohallah Cifci, Mehmet Akif Kausar, Samina Rehman, Rizwan Mahanta, Priyakshi Bora, Pranjal Kumar Almasri, Ammar Alkhawaldeh, Rami S. Hussain, Sadiq Alatas, Bilal Shoeibi, Afshin Moosaei, Hossein Hladík, Milan Nahavandi, Saeid Pardalo, Panos M. Institute for Big Data Analytics Faculty of Computer Science Dalhousie University Canada Deakin University Geelong Australia The Institute of Computer Technology Tu Wien University Vienna1040 Austria University of Kotli Azad Jammu and Kashmir Azad Kashmir Kotli Pakistan Centre for Computer Science and Applications Dibrugarh University Assam India Department of Management Information Sys Al-Balqa Applied University Salt19117 Jordan Department of Computer Information Systems The University of Jordan Aqaba77110 Jordan Examination Branch Dibrugarh University Assam Dibrugarh India Department of Software Eng. Firat University Elazig23100 Turkey Data Science and Computational Intelligence Institute University of Granada Spain Department of Informatics Faculty of Science Jan Evangelista Purkyně University in Ústí nad Labem Czech Republic Department of Applied Mathematics School of Computer Science Faculty of Mathematics and Physics Charles University Prague Czech Republic Harvard Paulson School of Engineering and Applied Sciences Harvard University AllstonMA02134 United States Swinburne University of Technology HawthornVIC3122 Australia Center for Applied Optimization Department of Industrial and Systems Engineering University of Florida Gainesville32611 United States

关键词： Decision making

Robust frequent directions with application in online learning

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The Journal of Machine Learning Research

The Journal of Machine Learning Research 2019年第1期20卷

作者： Luo Luo Cheng Chen Zhihua Zhang Wu-Jun Li Tong Zhang Department of Computer Science and Engineering Shanghai Jiao Tong University Shanghai China National Engineering Lab for Big Data Analysis and Applications School of Mathematical Sciences Peking University Beijing China National Key Laboratory for Novel Software Technology Collaborative Innovation Center of Novel Software Technology and Industrialization Department of Computer Science and Technology Nanjing University Nanjing China Computer Science & Mathematics Hong Kong University of Science and Technology Hong Kong

The frequent directions (FD) technique is a deterministic approach for online sketching that has many applications in machine learning. The conventional FD is a heuristic procedure that often outputs rank deficient matrices. To overcome the rank deficiency problem, we propose a new sketching strategy called robust frequent directions (RFD) by introducing a regularization term. RFD can be derived from an optimization problem. It updates the sketch matrix and the regularization term adaptively and jointly. RFD reduces the approximation error of FD without increasing the computational cost. We also apply RFD to online learning and propose an effective hyperparameter-free online Newton algorithm. We derive a regret bound for our online Newton algorithm based on RFD, which guarantees the robustness of the algorithm. The experimental studies demonstrate that the proposed method outperforms state-of-the-art second order online learning algorithms.

关键词： frequent directions matrix approximation online Newton algorithm online convex optimization sketching