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arXiv 2024年

作者： Roth, L. Blöcker, A. de Kleer, K. Goldstein, D. Lellouch, E. Saur, J. Schmidt, C. Strobel, D.F. Tao, C. Tsuchiya, F. Dols, V. Huybrighs, H. Mura, A. Szalay, J.R. Badman, S.V. de Pater, I. Dott, A.-C. Kagitani, M. Klaiber, L. Koga, R. McEwen, A. Milby, Z. Retherford, K.D. Schlegel, S. Thomas, N. Tseng, W.L. Vorburger, A. KTH Royal Institute of Technology Space and Plasma Physics Stockholm Sweden Department of Earth and Environmental Sciences Ludwig Maximilian University of Munich Munich Germany Division of Geological and Planetary Sciences California Institute of Technology PasadenaCA91125 United States Dept. Aerospace Engineering and Engineering Mechanics The University of Texas at Austin AustinTX United States Observatoire de Paris Meudon France Institute of Geophysics and Meteorology University of Cologne Cologne Germany Center for Space Physics Boston University BostonMA United States Departments of Earth & Planetary Science and Physics & Astronomy Johns Hopkins University BaltimoreMD21218 United States National Institute of Information and Communications Technology Koganei Japan Graduate School of Science Tohoku University Sendai Japan Institute for Space Astrophysics and Planetology National Institute for Astrophysics Italy School of Cosmic Physics DIAS Dunsink Observatory Dublin Institute for Advanced Studies Dublin15 Ireland Space and Planetary Science Center Khalifa University Abu Dhabi United Arab Emirates Department of Mathematics Khalifa University Abu Dhabi United Arab Emirates Roma Italy Department of Astrophysical Sciences Princeton University PrincetonNJ United States Department of Physics Lancaster University LancasterLA1 4YB United Kingdom Department of Astronomy Department of Earth & Planetary Science University of California BerkeleyCA94720 United States Physics Institute University of Bern Bern3012 Switzerland School of Data Science Nagoya University Aichi Nagoya464-8601 Japan Department of Planetary Sciences University of Arizona TucsonAZ United States Southwest Research Institute San AntonioTX United States University of Texas at San Antonio San AntonioTX United States Department of Earth Sciences National Taiwan Normal University Taiwan

Since the Voyager mission flybys in 1979, we have known the moon Io to be both volcanically active and the main source of plasma in the vast magnetosphere of Jupiter. Material lost from Io forms neutral clouds, the Io plasma torus and ultimately the extended plasma sheet. This material is supplied from Io’s upper atmosphere and atmospheric loss is likely driven by plasma-interaction effects with possible contributions from thermal escape and photochemistry-driven escape. Direct volcanic escape is negligible. The supply of material to maintain the plasma torus has been estimated from various methods at roughly one ton per second. Most of the time the magnetospheric plasma environment of Io is stable on timescales from days to months. Similarly, Io’s atmosphere was found to have a stable average density on the dayside, although it exhibits lateral (longitudinal and latitudinal) and temporal (both diurnal and seasonal) variations. There is potential positive feedback in the Io torus supply: collisions of torus plasma with atmospheric neutrals are probably a significant loss process, which increases with torus density. The stability of the torus environment may be maintained by limiting mechanisms of either torus supply from Io or the loss from the torus by centrifugal interchange in the middle magnetosphere. Various observations suggest that occasionally (roughly 1 to 2 detections per decade) the plasma torus undergoes major transient changes over a period of several weeks, apparently overcoming possible stabilizing mechanisms. Such events (as well as more frequent minor changes) are commonly explained by some kind of change in volcanic activity that triggers a chain of reactions which modify the plasma torus state via a net change in supply of new mass. However, it remains unknown what kind of volcanic event (if any) can trigger events in torus and magnetosphere, whether Io’s atmosphere undergoes a general change before or during such events, and what processes could

关键词： Magnetosphere

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AI Models Close to your Chest: Robust Federated Learning Strategies for Multi-site CT

arXiv

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arXiv 2023年

作者： Lee, Edward H. Kelly, Brendan Altinmakas, Emre Dogan, Hakan Mohammadzadeh, Maryam Colak, Errol Fu, Steve Choudhury, Olivia Ratan, Ujjwal Kitamura, Felipe Chaves, Hernan Zheng, Jimmy Said, Mourad Reis, Eduardo Lim, Jaekwang Yokoo, Patrícia Mitchell, Courtney Houshmand, Golnaz Ghassemi, Marzyeh Killeen, Ronan Qiu, Wendy Hayden, Joel Rafiee, Farnaz Klochko, Chad Bevins, Nicholas Sazgara, Faeze Wong, S. Simon Moseley, Michael Halabi, Safwan Yeom, Kristen W. School of Medicine Stanford University United States Insight Centre for Data Analytics University College Dublin Ireland Icahn School of Medicine at Mount Sinai United States Koç University School of Medicine Turkey Division of Neuroradiology Amiralam Hospital Tehran University of Medical Sciences Iran Unity Health Toronto St. Michael’s Hospital University of Toronto Canada Amazon Web Services United States Universidade Federal de São Paulo Brazil Fleni Argentina Radiology Department Centre International Carthage Médicale Monastir Tunisia Hospital Israelita Albert Einstein SP São Paulo Brazil Department of Radiology Kyungpook National University Hospital Korea Republic of Department of Radiology St. Joseph’s Hospital and Medical Center United States Rajaie Cardiovascular Medical and Research Center Iran University of Medical Sciences Iran Dept. of Electrical Engineering and Computer Science at MIT United States Department of Radiology Henry Ford Health System DetroitMI United States Department of Radiology Guilan University of Medical Sciences Iran Department of Electrical Engineering Stanford University United States Ann & Robert H. Lurie Children's Hospital of Chicago United States

While it is well known that population differences from genetics, sex, race, and environmental factors contribute to disease, AI studies in medicine have largely focused on locoregional patient cohorts with less diverse data sources. Such limitation stems from barriers to large-scale data share and ethical concerns over data privacy. Federated learning (FL) is one potential pathway for AI development that enables learning across hospitals without data share. In this study, we show the results of various FL strategies on one of the largest and most diverse COVID-19 chest CT datasets: 21 participating hospitals across five continents that comprise >10,000 patients with >1 million images. We also propose an FL strategy that leverages synthetically generated data to overcome class and size imbalances. We also describe the sources of data heterogeneity in the context of FL, and show how even among the correctly labeled populations, disparities can arise due to these biases. Copyright © 2023, The Authors. All rights reserved.

关键词： Hospitals

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FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare

arXiv

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arXiv 2023年

作者： Lekadir, Karim Feragen, Aasa Fofanah, Abdul Joseph Frangi, Alejandro F. Buyx, Alena Emelie, Anais Lara, Andrea Porras, Antonio R. Chan, An-Wen Navarro, Arcadi Glocker, Ben Botwe, Benard O. Khanal, Bishesh Beger, Brigit Wu, Carol C. Cintas, Celia Langlotz, Curtis P. Rueckert, Daniel Mzurikwao, Deogratias Fotiadis, Dimitrios I. Zhussupov, Doszhan Ferrante, Enzo Meijering, Erik Weicken, Eva González, Fabio A. Asselbergs, Folkert W. Prior, Fred Krestin, Gabriel P. Collins, Gary S. Tegenaw, Geletaw S. Kaissis, Georgios Misuraca, Gianluca Tsakou, Gianna Dwivedi, Girish Kondylakis, Haridimos Jayakody, Harsha Woodruf, Henry C. Mayer, Horst Joachim Aerts, Hugo JWL Walsh, Ian Chouvarda, Ioanna Buvat, Irène Tributsch, Isabell Rekik, Islem Duncan, James Kalpathy-Cramer, Jayashree Zahir, Jihad Park, Jinah Mongan, John Gichoya, Judy W. Schnabel, Julia A. Kushibar, Kaisar Riklund, Katrine Mori, Kensaku Marias, Kostas Amugongo, Lameck M. Fromont, Lauren A. Maier-Hein, Lena Alberich, Leonor Cerdá Rittner, Leticia Phiri, Lighton Marrakchi-Kacem, Linda Donoso-Bach, Lluís Martí-Bonmatí, Luis Cardoso, M. Jorge Bobowicz, Maciej Shabani, Mahsa Tsiknakis, Manolis Zuluaga, Maria A. Bielikova, Maria Fritzsche, Marie-Christine Camacho, Marina Linguraru, Marius George Wenzel, Markus De Bruijne, Marleen Tolsgaard, Martin G. Ghassemi, Marzyeh Ashrafuzzaman, Md Goisauf, Melanie Yaqub, Mohammad Abadía, Mónica Cano Mahmoud, Mukhtar M.E. Elattar, Mustafa Rieke, Nicola Papanikolaou, Nikolaos Lazrak, Noussair Díaz, Oliver Salvado, Olivier Pujol, Oriol Sall, Ousmane Guevara, Pamela Gordebeke, Peter Lambin, Philippe Brown, Pieta Abolmaesumi, Purang Dou, Qi Lu, Qinghua Osuala, Richard Nakasi, Rose Zhou, S. Kevin Napel, Sandy Colantonio, Sara Albarqouni, Shadi Joshi, Smriti Carter, Stacy Klein, Stefan Petersen, Steffen E. Aussó, Susanna Awate, Suyash Raviv, Tammy Riklin Cook, Tessa Mutsvangwa, Tinashe E.M. Rogers, Wendy A. Niessen, Wiro J. Puig-Bosch, Xènia Zeng, Yi Mohammed, Yunusa G. Aquino, Yves Saint James Salahuddin, Zohaib Starmans, Martijn P.A. Department de Matemàtiques i Informàtica Universitat de Barcelona Barcelona Spain Barcelona Spain DTU Compute Technical University of Denmark Kgs Lyngby Denmark Department of Mathematics and Computer Science Faculty of Science and Technology Milton Margai Technical University Freetown Sierra Leone Center for Computational Imaging & Simulation Technologies in Biomedicine Schools of Computing and Medicine University of Leeds Leeds United Kingdom Cardiovascular Science and Electronic Engineering Departments KU Leuven Leuven Belgium Institute of History and Ethics in Medicine Technical University of Munich Munich Germany Faculty of Engineering of Systems Informatics and Sciences of Computing Galileo University Guatemala City Guatemala Department of Biostatistics and Informatics Colorado School of Public Health University of Colorado Anschutz Medical Campus AuroraCO United States Department of Medicine Women’s College Research Institute University of Toronto Toronto Canada Universitat Pompeu Fabra BarcelonaBeta Brain Research Center Barcelona Spain Department of Computing Imperial College London London United Kingdom School of Biomedical & Allied Health Sciences University of Ghana Accra Ghana Department of Midwifery & Radiography School of Health & Psychological Sciences City University of London United Kingdom Kathmandu Nepal European Heart Network Brussels Belgium Department of Thoracic Imaging University of Texas MD Anderson Cancer Center Houston United States IBM Research Africa Nairobi Kenya Departments of Radiology Medicine and Biomedical Data Science Stanford University School of Medicine Stanford United States Institute for AI and Informatics in Medicine Klinikum rechts der Isar Technical University Munich Munich Germany Department of Computing Imperial College London London United Kingdom Muhimbili University of Health and Allied Sciences Dar es Salaam Tanzania United Republic of Ioannina Greece Almaty AI Lab Almaty Kazakhstan

Background: Despite major advances in artificial intelligence (AI) research for healthcare, the deployment and adoption of AI technologies remain limited in clinical practice. In recent years, concerns have been raised about the clinical, technical, ethical and legal risks associated with healthcare AI. To increase adoption in the real world, it is essential that AI technologies are trusted and accepted by patients, clinicians, health organisations and authorities. This paper describes the FUTURE-AI framework as the first international consensus guideline for trustworthy AI in healthcare. Methods: The FUTURE-AI consortium was founded in 2021 and now comprises 117 interdisciplinary experts from 50 countries representing all continents, including AI scientists, clinical researchers, biomedical ethicists, and social scientists. Over a two-year period, the consortium established guiding principles and best practices for trustworthy and deployable AI through an iterative process comprising an in-dept. literature review, a modified Delphi survey, and online consensus meetings. Findings: The FUTURE-AI framework was established based on six guiding principles for trustworthy AI in healthcare, i.e. Fairness, Universality, Traceability, Usability, Robustness and Explainability. Through consensus, a set of 30 best practices were defined, addressing technical, clinical, socio-ethical and legal dimensions of trustworthy AI. The recommendations cover the entire lifecycle of healthcare AI, from design, development and validation to regulation, deployment, and monitoring. Interpretation: FUTURE-AI is a structured, risk-informed framework which provides guidance for constructing healthcare AI tools that will be trusted, deployed and adopted in real-world clinical practice. Researchers are encouraged to take the recommendations into account in proof-of-concept stages to facilitate future translation towards clinical practice of healthcare AI. Copyright © 2023, The Authors. All rights

关键词： Clinical research

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An OpenMetBuoy dataset of Marginal Ice Zone dynamics collected around Svalbard in 2022 and 2023

arXiv

引用

arXiv 2024年

作者： Rabault, Jean Taelman, Catherine Idžanović, Martina Hope, Gaute Nose, Takehiko Kristoffersen, Yngve Jensen, Atle Breivik, Øyvind Bryhni, Helge Thomas Hoppmann, Mario Demchev, Denis Korosov, Anton Johansson, Malin Eltoft, Torbjørn Dagestad, Knut-Frode Röhrs, Johannes Eriksson, Leif Moro, Marina Durán Rikardsen, Edel S.U. Waseda, Takuji Kodaira, Tsubasa Lohse, Johannes Desjonquères, Thibault Olsen, Sveinung Gundersen, Olav de Aguiar, Victor Cesar Martins Karlsen, Truls Babanin, Alexander Voermans, Joey Park, Jeong-Won Müller, Malte Norwegian Meteorological Institute IT Department Oslo0313 Norway UiT The Arctic University of Norway Dept. of Physics and Technology Tromsø9037 Norway Norwegian Meteorological Institute Division for Ocean and Ice Oslo0371 Norway Norwegian Meteorological Institute Division for Oceanography and Marine Meteorology Bergen5007 Norway The University of Tokyo Graduate School of Frontier Sciences Kashiwa277-8561 Japan University of Bergen Department of Earth Science Bergen5007 Norway University of Oslo Department of Mathematics Oslo0313 Norway University of Bergen Geophysical Institute Bergen5007 Norway Alfred-Wegener-Institut Helmholtz-Zentrum fuer Polar- und Meeresforschung Bremerhaven27580 Germany Department of Space Earth and Environment Chalmers University of Technology Gothenburg41296 Sweden Ocean and Sea Ice Remote Sensing Group Nansen Environmental and Remote Sensing Center Bergen5006 Norway Norwegian Meteorological Institute Remote sensing and data management division Oslo Norway University of Oslo Department of Geosciences Oslo0313 Norway Japan Agency for Marine-Earth Science and Technology Yokosuka237-0061 Japan Gothenburg University Gothenburg40508 Sweden Department of Infrastructure Engineering University of Melbourne Melbourne Australia Center of Remote Sensing and GIS Korea Polar Research Institute Incheon21990 Korea Republic of Norwegian Meteorological institute R&D Department Oslo0313 Norway

Sea ice is a key element of the global Earth system, with a major impact on global climate and regional weather. Unfortunately, accurate sea ice modeling is challenging due to the diversity and complexity of underlying physics happening there, and a relative lack of ground truth observations. This is especially true for the Marginal Ice Zone (MIZ), which is the area where sea ice is affected by incoming ocean waves. Waves contribute to making the area dynamic, and due to the low survival time of the buoys deployed there, the MIZ is challenging to monitor. In 2022-2023, we released 79 OpenMetBuoys (OMBs) around Svalbard, both in the MIZ and the ocean immediately outside of it. OMBs are affordable enough to be deployed in large number, and gather information about drift (GPS position) and waves (1-dimensional elevation spectrum). This provides data focusing on the area around Svalbard with unprecedented spatial and temporal resolution. We expect that this will allow to perform validation and calibration of ice models and remote sensing algorithms. © 2024, CC BY.

关键词： Water waves

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Apercal - The Apertif calibration pipeline

arXiv

引用

arXiv 2021年

作者： Adebahr, Björn Schulz, R. Dijkema, T.J. Moss, V.A. Offringa, A.R. Kutkin, A. van der Hulst, J.M. Frank, B.S. Vilchez, N.P.E. Verstappen, J. Adams, E.K. de Blok, W.J.G. Denes, H. Hess, K.M. Lucero, D. Morganti, R. Oosterloo, T. Pisano, D.-J. Ivashina, M.V. van Cappellen, W.A. Connor, L.D. Coolen, A.H.W.M. Damstra, S. Loose, G.M. Maan, Y. Maccagni, F.M. Mika, A. Mulder, H. Oostrum, L.C. Orrú, E. Smits, R. van der Schuur, D. van Leeuwen, J. Vohl, D. Wijnholds, S.J. Ziemke, J. Bochum Germany ASTRON Dwingeloo Netherlands CSIRO Astronomy and Space Science Sydney Australia University of Sydney Sydney Australia Cavendish Laboratory Cambridge United Kingdom Kapteyn Astronomical Institute University of Groningen Groningen Netherlands Department of Physics Virginia Tech BlacksburgVA United States Astro Space Center of Lebedev Physical Institute Profsoyuznaya Str. 84/32 Moscow117997 Russia 2 Fir Street Observatory 7925 South Africa Inter-University Institute for Data Intensive Astronomy Department of Astronomy University of Cape Town Private Bag X3 Rondebosch 7701 South Africa University of Cape Town University Private Bag Rondebosch Cape Town7701 South Africa Department of Physics and Astronomy West Virginia University White Hall Box 6315 MorgantownWV26506 United States Dept. of Electrical Engineering Chalmers University of Technology Gothenburg Sweden Anton Pannekoek Institute University of Amsterdam Postbus 94249 Amsterdam1090 GE Netherlands Rijksuniversiteit Groningen Center for Information Technology P.O. Box 11044 Groningen9700 CA Netherlands Netherlands eScience Center Science Park 140 Amsterdam1098 XG Netherlands INAF Osservatorio Astronomico di Cagliari Via della Scienza 5 CA Selargius09047 Italy

Apertif (APERture Tile In Focus) is one of the Square Kilometre Array (SKA) pathfinder facilities. The Apertif project is an upgrade to the 50-year-old Westerbork Synthesis Radio Telescope (WSRT) using phased-array feed technology. The new receivers create 40 individual beams on the sky, achieving an instantaneous sky coverage of 6.5 square degrees. The primary goal of the Apertif Imaging Survey is to perform a wide survey of 3500 square degrees (AWES) and a medium deep survey of 350 square degrees (AMES) of neutral atomic hydrogen (up to a redshift of 0.26), radio continuum emission and polarisation. Each survey pointing yields 4.6 TB of correlated data. The goal of Apercal is to process this data and fully automatically generate science ready data products for the astronomical community while keeping up with the survey observations. We make use of common astronomical software packages in combination with Python based routines and parallelisation. We use an object oriented module-based approach to ensure easy adaptation of the pipeline. A Jupyter notebook based framework allows user interaction and execution of individual modules as well as a full automatic processing of a complete survey observation. If nothing interrupts processing, we are able to reduce a single pointing survey observation on our five node cluster with 24 physical cores and 256 GB of memory each within 24h keeping up with the speed of the surveys. The quality of the generated images is sufficient for scientific usage for 44 % of the recorded data products with single images reaching dynamic ranges of several thousands. Future improvements will increase this percentage to over 80 %. Our design allowed development of the pipeline in parallel to the commissioning of the Apertif system. © 2021, CC BY.

关键词： Surveys

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Identifying the best machine learning algorithms for brain tumor segmentation, progression assessment, and overall survival prediction in the BRATS challenge

arXiv

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arXiv 2018年

作者： Bakas, Spyridon Reyes, Mauricio Jakab, Andras Bauer, Stefan Rempfler, Markus Crimi, Alessandro Shinohara, Russell Takeshi Berger, Christoph Ha, Sung Min Rozycki, Martin Prastawa, Marcel Alberts, Esther Lipkova, Jana Freymann, John Kirby, Justin Bilello, Michel Fathallah-Shaykh, Hassan M. Wiest, Roland Kirschke, Jan Wiestler, Benedikt Colen, Rivka Kotrotsou, Aikaterini Lamontagne, Pamela Marcus, Daniel Milchenko, Mikhail Nazeri, Arash Weber, Marc-Andr Mahajan, Abhishek Baid, Ujjwal Gerstner, Elizabeth Kwon, Dongjin Acharya, Gagan Agarwal, Manu Alam, Mahbubul Albiol, Alberto Albiol, Antonio Albiol, Francisco J. Alex, Varghese Allinson, Nigel Amorim, Pedro H.A. Amrutkar, Abhijit Anand, Ganesh Andermatt, Simon Arbel, Tal Arbelaez, Pablo Avery, Aaron Azmat, Muneeza Pranjal, B. Bai, Wenjia Banerjee, Subhashis Barth, Bill Batchelder, Thomas Batmanghelich, Kayhan Battistella, Enzo Beers, Andrew Belyaev, Mikhail Bendszus, Martin Benson, Eze Bernal, Jose Bharath, Halandur Nagaraja Biros, George Bisdas, Sotirios Brown, James Cabezas, Mariano Cao, Shilei Cardoso, Jorge M. Carver, Eric N. Casamitjana, Adri Castillo, Laura Silvana Cat, Marcel Cattin, Philippe Cérigues, Albert Chagas, Vinicius S. Chandra, Siddhartha Chang, Yi-Ju Chang, Shiyu Chang, Ken Chazalon, Joseph Chen, Shengcong Chen, Wei Chen, Jefferson W. Chen, Zhaolin Cheng, Kun Choudhury, Ahana Roy Chylla, Roger Clrigues, Albert Colleman, Steven Colmeiro, Ramiro German Rodriguez Combalia, Marc Costa, Anthony Cui, Xiaomeng Dai, Zhenzhen Dai, Lutao Daza, Laura Alexandra Deutsch, Eric Ding, Changxing Dong, Chao Dong, Shidu Dudzik, Wojciech Eaton-Rosen, Zach Egan, Gary Escudero, Guilherme Estienne, Tho Everson, Richard Fabrizio, Jonathan Fan, Yong Fang, Longwei Feng, Xue Ferrante, Enzo Fidon, Lucas Fischer, Martin French, Andrew P. Fridman, Naomi Fu, Huan Fuentes, David Gao, Yaozong Gates, Evan Gering, David Gholami, Amir Gierke, Willi Glocker, Ben Gong, Mingming Gonzlez-Vill, Sandra Grosges, T. Guan, Yuanfang Guo, Sheng Gupta, Sudeep Han, Woo-Sup Han, Il Song Harmuth, Ko Center for Biomedical Image Computing and Analytics University of Pennsylvania PhiladelphiaPA United States Department of Radiology Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Institute for Surgical Technology and Biomechanics University of Bern Bern Switzerland Center for MR-Research University Children's Hospital Zurich Zurich Switzerland Support Centre for Advanced Neuroimaging Inselspital Institute for Diagnostic and Interventional Neuroradiology Bern University Hospital Bern Switzerland University Hospital of Zurich Zurich Switzerland Center for Clinical Epidemiology and Biostatistics University of Pennsylvania Philadelphia United States Image-Based Biomedical Modeling Group Technical University of Munich Munich Germany Icahn School of Medicine Mount Sinai Health System New YorkNY United States Leidos Biomedical Research Inc. Frederick National Laboratory for Cancer Research FrederickMD21701 United States Cancer Imaging Program National Cancer Institute National Institutes of Health BethesdaMD20814 United States Department of Neurology University of Alabama at Birmingham BirminghamAL United States Department of Diagnostic Radiology University of Texas MD Anderson Cancer Center HoustonTX United States Department of Psychology Washington University St. LouisMO United States Neuroimaging Informatics and Analysis Center Washington University St. LouisMO United States Department of Radiology Washington University St. LouisMO United States Institute of Diagnostic and Interventional Radiology Pediatric Radiology and Neuroradiology University Medical Center Rostock Ernst-Heydemann-Str. 6 Rostock18057 Germany Tata Memorial Centre Homi Bhabha National Institute Mumbai India Shri Guru Gobind Singhji Institute of Engineering and Technology Nanded India NVIDIA Santa Clara

Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST/RANO criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that underwent gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset. Copyright © 2018, The Authors. All rights reserved.

关键词： Tumors

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Assessing generalisability of deep learning-based polyp detection and segmentation methods through a computer vision challenge

arXiv

引用

arXiv 2022年

作者： Ali, Sharib Ghatwary, Noha Jha, Debesh Isik-Polat, Ece Polat, Gorkem Yang, Chen Li, Wuyang Galdran, Adrian Ballester, Miguel-Ángel González Thambawita, Vajira Hicks, Steven Poudel, Sahadev Lee, Sang-Woong Jin, Ziyi Gan, Tianyuan Yu, ChengHui Yan, JiangPeng Yeo, Doyeob Lee, Hyunseok Tomar, Nikhil Kumar Haithmi, Mahmood Ahmed, Amr Riegler, Michael A. Daul, Christian Halvorsen, Pål Rittscher, Jens Salem, Osama E. Lamarque, Dominique Cannizzaro, Renato Realdon, Stefano de Lange, Thomas East, James E. Institute of Biomedical Engineering Department of Engineering Science University of Oxford OxfordOX3 7DQ United Kingdom Oxford National Institute for Health Research Biomedical Research Centre OxfordOX4 2PG United Kingdom Big Data Institute University of Oxford Li Ka Shing Centre for Health Information and Discovery OxfordOX3 7LF United Kingdom Translational Gastroenterology Unit Nuffield Department of Medicine Experimental Medicine Div. John Radcliffe Hospital University of Oxford OxfordOX3 9DU United Kingdom Computer Engineering Department Arab Academy for Science and Technology Alexandria1029 Egypt SimulaMet Oslo0167 Norway Department of Computer Science UiT The Arctic University of Norway Hansine Hansens veg 18 Tromsø9019 Norway Medical Department Sahlgrenska University Hospital-Mölndal Blå stråket 5 Göteborg413 45 Sweden Veneto Institute of Oncology IOV-IRCCS Via Gattamelata 64 Padua35128 Italy CRO Centro Riferimento Oncologico IRCCS Aviano Italy Via Franco Gallini 2 PN Aviano33081 Italy Université de Versailles St-Quentin en Yvelines Hôpital Ambroise Paré 9 Av. Charles de Gaulle Boulogne-Billancourt92100 France Faculty of Medicine University of Alexandria Alexandria21131 Egypt Graduate School of Informatics Middle East Technical University Ankara06800 Turkey City University of Hong Kong Kowloon Hong Kong BCN MedTech Dept. of Information and Communication Technologies Universitat Pompeu Fabra Barcelona08018 Spain Department of IT Convergence Engineering Gachon University Seongnam13120 Korea Republic of College of Biomedical Engineering and Instrument Science Zhejiang University Hangzhou310027 China Tsinghua Shenzhen International Graduate School Tsinghua University Shenzhen518055 China Department of Automation Tsinghua University Beijing100084 China Smart Sensing & Diagnosis Research Division Korea Atomic Energy Research Institute 34057 Korea Republic of Daegu-Gyeongbuk Medical Innovation Foundation Medical Device Deve

Polyps are well-known cancer precursors identified by colonoscopy. However, variability in their size, location, and surface largely affect identification, localisation, and characterisation. Moreover, colonoscopic surveillance and removal of polyps (referred to as polypectomy) are highly operator-dependent procedures. There exist a high missed detection rate and incomplete removal of colonic polyps due to their variable nature, the difficulties to delineate the abnormality, the high recurrence rates, and the anatomical topography of the colon. There have been several developments in realising automated methods for both detection and segmentation of these polyps using machine learning. However, the major drawback in most of these methods is their ability to generalise to out-of-sample unseen datasets that come from different centres, modalities and acquisition systems. To test this hypothesis rigorously we curated a multi-centre and multi-population dataset acquired from multiple colonoscopy systems and challenged teams comprising machine learning experts to develop robust automated detection and segmentation methods as part of our crowd-sourcing Endoscopic computer vision challenge (EndoCV) 2021. In this paper, we analyse the detection results of the four top (among seven) teams and the segmentation results of the five top teams (among 16). Our analyses demonstrate that the top-ranking teams concentrated on accuracy (i.e., accuracy > 80% on overall Dice score on different validation sets) over real-time performance required for clinical applicability. We further dissect the methods and provide an experiment-based hypothesis that reveals the need for improved generalisability to tackle diversity present in multi-centre datasets. © 2022, CC BY-NC-SA.

关键词： Endoscopy

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The Effect of Relative Humidity on Eddy Covariance Latent Heat Flux Measurements and its Implication for Partitioning into Transpiration and Evaporation

SSRN

引用

SSRN 2022年

作者： Zhang, Weijie Jung, Martin Migliavacca, Mirco Poyatos, Rafael Miralles, Diego El-Madany, Tarek S. Galvagno, Marta Carrara, Arnaud Arriga, Nicola Ibrom, Andreas Mammarella, Ivan Papale, Dario Cleverly, Jamie Liddell, Michael J. Wohlfahrt, Georg Markwitz, Christian Mauder, Matthias Paul-Limoges, Eugenie Schmidt, Marius Wolf, Sebastian Brümmer, Christian Arain, M. Altaf Fares, Silvano Kato, Tomomichi Ardö, Jonas Oechel, Walter Hanson, Chad Korkiakoski, Mika Biraud, Sébastien Steinbrecher, Rainer Billesbach, Dave Montagnani, Leonardo Woodgate, William Shao, Changliang Carvalhais, Nuno Reichstein, Markus Nelson, Jacob A. Department of Biogeochemical Integration Max Planck Institute for Biogeochemistry Jena Germany Faculty of Bioscience Engineering Ghent University Ghent Belgium Italy CREAF Cerdanyola del Vallès Spain Universitat Autònoma de Barcelona Cerdanyola del Vallès Spain Climate Change Unit Environmental Protection Agency of Aosta Valley Aosta Italy Fundación Centro de Estudios Ambientales del Mediterráneo Valencia Paterna46980 Spain Technical University of Denmark Dept. of Environment and Resource Management Kgs. Lyngby Denmark Faculty of Science University of Helsinki P.O. Box 68 Helsinki00014 Finland University of Tuscia - DIBAF Viterbo01100 Italy IAFES Viterbo01100 Italy College of Science and Engineering James Cook University CairnsQLD4878 Australia Department of Ecology University of Innsbruck Innsbruck Austria Bioclimatology University of Göttingen Göttingen Germany Technische Universität Dresden Faculty of Environmental Sciences Dresden Germany Department of Geography University of Zurich Zurich8057 Switzerland Agrosphere Institute IBG-3 Forschungszentrum Jülich GmbH Jülich52425 Germany Department of Environmental Systems Science ETH Zurich Zurich8092 Switzerland Thünen Institute of Climate-Smart Agriculture Braunschweig Germany School of Earth Environment and Society McMaster University HamiltonON Canada National Research Council of Italy Institute of Bioeconomy Rome Italy Research Faculty of Agriculture Hokkaido University Sapporo Japan Department of Physical Geography and Ecosystem Science Lund University Sweden Global Change Research Group San Diego State University San DiegoCA United States Department of Geography University of Exeter Exeter United Kingdom Department of Forests Ecosystems and Society College of Forestry Oregon State University CorvallisOR United States Climate Sciences Department Lawrence Berkeley National Laboratory BerkeleyCA United States Garmisch-Partenkirchen Germany University of Nebraska

While the eddy covariance (EC) technique is a well-established method for measuring water fluxes (i.e., evaporation or 'evapotranspiration’, ET), the method is susceptible to many uncertainties. One such issue is the potential underestimation of ET when relative humidity (RH) is high (>70%), due to low-pass filtering with some EC systems. The influence of these errors for different types of EC systems (e.g. open- or closed-path sensors) has not been characterized for synthesis datasets such as the widely used FLUXNET2015 dataset. Here, we assess the RH-associated underestimation of ET from different EC systems for 163 sites in the FLUXNET2015 dataset. We found that high RH errors were most apparent during hours when RH was approximately 70% or higher. This underestimation was predominantly observed at sites using closed-path EC systems, with ET underestimations estimated at 58% when RH was higher than 90%. To assess the potential impact of high RH on ET and EC-based transpiration (T) estimates, ET was corrected using a machine learning based empirical approach and then partitioned into T and E using two different data-driven methods. Results showed opposite (increasing vs decreasing T-to-ET ratios, T/ET) responses owing to the contrasting ways the two methods model WUE. Analysis of T estimates based on three different ET correction approaches showed no clear improvement in correlation with independent sap flow based T. Overall, our results demonstrate the existence of high RH-related bias in water fluxes in the FLUXNET2015 dataset and suggest that the underestimation of ET is a significant source of uncertainty that must be reckoned with when estimating ecosystem T/ET and WUE. This work further demonstrates the need for high-quality, independent ecosystem water flux measurements to understand the uncertainties in EC-based ET and T estimates. © 2022, The Authors. All rights reserved.

关键词： Evapotranspiration

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Preface

引用

Lecture Notes in Computer science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2000年 1803卷 6-6页

作者： Cagnoni, Stefano Poli, Riccardo Li, Yun Smith, George Corne, David Oates, Martin Hart, Emma Lanzi, Pier Luca Boers, Egbert J. W. Paechter, Ben Fogarty, Terence C. University of Parma Department of Computer Engineering Parco delle Scienze 181/a Parma Italy The University of Birmingham School of Computer Science Edgbaston Birmingham United Kingdom University of Glasgow Electronics and Electrical Engineering Rankine Building Glasgow United Kingdom University of East Anglia Department of Information Systems Norwich United Kingdom University of Reading P.O. Box 225 Whiteknights Reading United Kingdom BT Labs at Adastral Park Dept. Complex Systems Laboratory Martlesham Heath Suffolk United Kingdom University of Edinburgh Division of Informatics 80 South Bridge Edinburgh United Kingdom Milan Polytechnic Department of Electronics and Informatics Piazza Leonard0 da Vinci 32 Milan Italy National Aerospace Laboratory NLR Data and Knowledge Systems Dept I.C.T. Division Anthony Fokkerweg 2 Amsterdam Netherlands Napier University School of Computing 219 Colinton Road Edinburgh United Kingdom South Bank University School of Computing Information Systems and Mathematics 103 Borough Road London United Kingdom

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2022 Roadmap on Neuromorphic Computing and engineering

arXiv

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arXiv 2021年

作者： Christensen, Dennis Valbjørn Dittmann, Regina Linares-Barranco, Bernabé Sebastian, Abu Le Gallo, Manuel Redaelli, Andrea Slesazeck, Stefan Mikolajick, Thomas Spiga, Sabina Menzel, Stephan Valov, Ilia Milano, Gianluca Ricciardi, Carlo Liang, Shi-Jun Miao, Feng Lanza, Mario Quill, Tyler J. Keene, Scott T. Salleo, Alberto Grollier, Julie Marković, Danijela Mizrahi, Alice Yao, Peng Yang, J. Joshua Indiveri, Giacomo Strachan, John Paul Datta, Suman Vianello, Elisa Valentian, Alexandre Feldmann, Johannes Li, Xuan Pernice, Wolfram H.P. Bhaskaran, Harish Furber, Steve Neftci, Emre Scherr, Franz Maass, Wolfgang Ramaswamy, Srikanth Tapson, Jonathan Panda, Priyadarshini Kim, Youngeun Tanaka, Gouhei Thorpe, Simon Bartolozzi, Chiara Cleland, Thomas A. Posch, Christoph Liu, Shih-Chii Panuccio, Gabriella Mahmud, Mufti Mazumder, Arnab Neelim Hosseini, Morteza Mohsenin, Tinoosh Donati, Elisa Tolu, Silvia Galeazzi, Roberto Christensen, Martin Ejsing Holm, Sune Ielmini, Daniele Pryds, N. Department of Energy Conversion and Storage Technical University of Denmark Kgs. LyngbyDK-2800 Denmark Peter Gruenberg Institute 7 Forschungszentrum Juelich GmbH Juelich52425 Germany JARA-FIT RWTH Aachen University Aachen52056 Germany CSIC Universidad de Sevilla Seville41092 Spain IBM Research Zurich Switzerland STMicroelectronics Agrate Italy Dresden01187 Germany Institute of Semiconductors and Microsystems TU Dresden Dresden Germany CNR-IMM Unit of Agrate Brianza via C. Olivetti 2 MB Agrate Brianza Italy Juelich Germany Torino Italy Department of Applied Science and Technology Politecnico di Torino Torino Italy National Laboratory of Solid State Microstructures School of Physics Collaborative Innovation Center of Advanced Microstructures Nanjing University Nanjing China Thuwal23955-6900 Saudi Arabia Department of Materials Science and Engineering Stanford University StanfordCA94305 United States Department of Engineering University of Cambridge CambridgeCB2 1PZ United Kingdom Unité Mixte de Physique CNRS Thales Université Paris-Saclay Palaiseau91767 France Electrical and Computer Engineering Department University of Southern California Los AngelesCA United States Institute of Neuroinformatics University of Zurich ETH Zurich Switzerland Hewlett Packard Laboratories Hewlett Packard Enterprise San JoseCA United States Department of Electrical Engineering University of Notre Dame Notre DameIN United States CEA LETI Université Grenoble Alpes Grenoble France CEA LIST Université Grenoble Alpes Grenoble France Department of Materials University of Oxford Parks Road OxfordOX1 3PH United Kingdom Institute of Physics University of Münster Heisenbergstr. 11 Heisenbergstr Münster48149 Germany Center for Soft Nanoscience University of Münster Münster48149 Germany The University of Manchester United Kingdom Department of Cognitive Sciences University of California Irvine IrvineCA United States Institute of Theoretica

Modern computation based on the von Neumann architecture is today a mature cutting-edge science. In the Von Neumann architecture, processing and memory units are implemented as separate blocks interchanging data intensively and continuously. This data transfer is responsible for a large part of the power consumption. The next generation computer technology is expected to solve problems at the exascale with 1018 calculations each second. Even though these future computers will be incredibly powerful, if they are based on von Neumann type architectures, they will consume between 20 and 30 megawatts of power and will not have intrinsic physically built-in capabilities to learn or deal with complex data as our brain does. These needs can be addressed by neuromorphic computing systems which are inspired by the biological concepts of the human brain. This new generation of computers has the potential to be used for the storage and processing of large amounts of digital information with much lower power consumption than conventional processors. Among their potential future applications, an important niche is moving the control from data centers to edge devices. The aim of this Roadmap is to present a snapshot of the present state of neuromorphic technology and provide an opinion on the challenges and opportunities that the future holds in the major areas of neuromorphic technology, namely materials, devices, neuromorphic circuits, neuromorphic algorithms, applications, and ethics. The Roadmap is a collection of perspectives where leading researchers in the neuromorphic community provide their own view about the current state and the future challenges for each research area. We hope that this Roadmap will be a useful resource by providing a concise yet comprehensive introduction to readers outside this field, for those who are just entering the field, as well as providing future perspectives for those who are well established in the neuromorphic computing community. © 2021,

关键词： data transfer

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