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Parallelism of clonal selection for PSP on CUDA

Parallelism of clonal selection for PSP on CUDA

引用

International Conference on Intelligent Network and Intelligent Systems

作者： Zhu, Hongbing Xiao, Heng Gu, JinGuang College of Computer Science and Technology Wuhan University of Science and Technology Wuhan China Dept. of Computer Science Faculty of Informatics Hiroshima Kokusai Gakuin University Hiroshima Japan

ISBN: (纸本)9780769542492

Protein structure prediction (PSP) is the process of searching for the min energy of the protein. While many algorithms have being put forward to predict the structure of protein, the complicated computation make the time cost of the algorithms are significantly expensive. CUDA, the newly developing technology, makes us use Graphic Processing Unit (GPU) that is mainly used on Graphic processing at before, much better to develop the general parallel program. So, it gives us a new direction to study the parallelism on PSP. In this paper, we select the clonal selection algorithm for PSP on AB Off-Lattice model and have attempted to fulfill it on the CUDA platform. The results from the experiments showed that it reduced the time cost of the algorithm greatly with a suitable precision. It also provides us a new beginning of the research on PSP. © 2010 IEEE.

关键词： Graphics processing unit

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Implementation of paralleling Genetic Annealing Algorithm on grid

Implementation of paralleling Genetic Annealing Algorithm on...

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International Conference on Intelligent Network and Intelligent Systems

作者： Zhu, Hongbing Li, Chunli Gu, JinGuang College of Computer Science and Technology Wuhan University of Science and Technology Wuhan China Dept. of Computer Science Faculty of Informatics Hiroshima Kokusai Gakuin University Hiroshima Japan

ISBN: (纸本)9780769542492

Genetic Annealing Algorithm(GAA) combines with simulated annealing algorithm and genetic algorithms, which is one of the most representative algorithms to be applied into the protein structure prediction (PSP), but it requires computing power for the complexity of the algorithm itself. So a parallel GAA was proposed, which was run on the grid system. In this paper, we established a three-node grid system, and implemented parallel GAA algorithm in the system. The experiment results were shown that the performance had been significantly improved. © 2010 IEEE.

关键词： Simulated annealing

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Polytopic representation of impedance model with feedback delay

Polytopic representation of impedance model with feedback de...

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作者： Galambos, Péter Baranyi, Péter Korondi, Péter Computer and Automation Research Institute Hungarian Academy of Sciences Cognitive Informatics Group Hungary Budapest University of Technology and Economics Dept. of Manufacturing Science and Technology Hungary Budapest University of Technology and Economics Dept. of Telecommunications and Media Informatics Hungary Budapest University of Technology and Economics Dept. of Mechatronics Optics and Engineering Informatics Hungary

ISBN: (纸本)9789549260014

In haptic and telemanipulation devices stability and transparency are contradicting requirements. Due to the network delay the control process may become unstable. In our research we consider the coupled impedance type control algorithms for force reflecting telemanipulation. In this paper, an extended TP model transformation is proposed to convert the delayed system into a polytopic tensor product (TP) model considering the value of the feedback delay as a parameter. Using such model, the design of a stabilizing controller become easier as it does not contain feedback delay. As example, a single degree of freedom impedance model with feedback delay is discussed. The results are confirmed by numerical simulation.

关键词： Degrees of freedom (mechanics)

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A toolkit to explore lived experience of motivation: When words are not enough

A toolkit to explore lived experience of motivation: When wo...

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2011 5th International Conference on Pervasive Computing Technologies for Healthcare and Workshops, PervasiveHealth 2011

作者： Axelrod, Lesley Balaam, Madeline Burridge, Jane Smith, Penny Probert Fitzpatrick, Geraldine Mawson, Sue Ricketts, Ian Rodden, Tom User Centred Technology Lab Interactive Systems Informatics University of Sussex Falmer Brighton BN1 9QH United Kingdom Culture Lab Newcastle University Newcastle upon Tyne NE1 7RU United Kingdom School of Health Sciences University of Southampton Southampton S017 1BJ United Kingdom Dept Engineering Science University of Oxford Oxford 0X1 3PJ United Kingdom Human Computer Interaction Group Technical University of Vienna Favoritenstrase 9-11 A-1040 Vienna Austria Centre for Health and Social Care Research Sheffield Hallam University Sheffield S10 2BP United Kingdom School of Computing University of Dundee Dundee DD1 4HN United Kingdom Dept. Computer Science University of Nottingham NG8 IBB United Kingdom

ISBN: (纸本)9781936968152

Designing to support motivation is an increasingly important issue, especially as pervasive technologies are used to facilitate various healthy behaviour changes. There are many motivation theories but these do not map specifically to inform design. In 'Motivating Mobility' we explore the lived experiences of motivation of people with stroke, in order to design rehabilitation technologies. Motivation varies between people, between contexts and over time and can be 'difficult to express', particularly for those with communication problems. We describe development of a theoretically based toolkit, principled in both content and form, and using multiple modes of communication, aimed at gathering motivational requirements in order to inspire design. We show use of the toolkit, discuss the rich data collected and reflect on how well the approach works and ties requirements, via their elicitation tool, back to theory. This toolkit has potential to inform design for motivational effect in similar pervasive health applications. © 2011 ICST.

关键词： Motivation

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Convex hull manipulation does matter in LMI based observer design, a TP model transformation based optimisation

Convex hull manipulation does matter in LMI based observer d...

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作者： Gróf, Patrícia Baranyi, Péter Korondi, Péter Computer and Automation Research Institute Cognitive Informatics Research Budapest Hungary Budapest University of Technology and Economics Dept. of Telecommunications and Media Informatics Budapest Hungary Budapest University of Technology and Economics Dept. of Mechatronics Optics and Engineering Informatics Budapest Hungary

ISBN: (纸本)9789549260014

This paper deals with the topic of qLPV state-space model based control design in which LMIs are used to optimize the multi-objective control performance. In this paper we investigate how the convex hull of the polytopic model influences the state value estimation of the LMI based control design. We examine these influences through the control design of the two dimensional aeroelastic system's example. First we define various TP type polytopic model representations of a wing section whose vertices define different convex hulls. In the second step we investigate how these models lead to different performances of the state value estimation.

关键词： State space methods

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Cyclic scheduling: Diophantine problems perspective

Cyclic scheduling: Diophantine problems perspective

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作者： Bocewicz, Grzegorz Muszyński, Wojciech Banaszak, Zbigniew Koszalin University of Technology Dept. of Computer Science and Management Koszalin Poland Technical University of Wroclaw Wroclaw Poland Warsaw University of Technology Faculty of Management Dept. of Business Informatics Warsaw Poland

ISBN: (纸本)9783902661777

Cyclic scheduling concerns of rules aimed at resources assignment as to minimize a given objective function, e.g. the cycle of order execution, feasible timetabling. Such kind of problems belongs to a class of the NP-hard ones. Moreover, assuming integer character of data domain it belongs to the class of Diophantine problems that implies their undecidability. In that context, the contribution emphasizes benefits derived from Diophantine problems perspective while focuses on cyclic steady state reachability problem. The conditions sufficient for periodic behaviour of a system composed of sequential, repetitive processes are the main objective. The relationship between system resource constraints and an initial state as well as priority rules allocation is investigated. Finally, the conditions assuring steady state behavior of the system controlled by distributed set of dispatching rules are discussed. Copyright © 2010 IFAC.

关键词： Concurrency control

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SRLG failure localization in transparent optical mesh networks with monitoring trees and trails

SRLG failure localization in transparent optical mesh networ...

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作者： Babarczi, Péter Tapolcai, János Ho, Pin-Han Wu, Bin Dept. of Telecommunications and Media Informatics Budapest University of Technology and Economics Hungary Department of Electrical and Computer Engineering University of Waterloo Canada

ISBN: (纸本)9781424477975

The paper investigates failure localization in all-optical mesh networks using monitoring trails (m-trails) and monitoring trees (m-trees). By considering shared risk link groups (SRLGs) of different scenarios, integer linear programs (ILP) for m-trail/m-tree allocation are provided that can achieve unambiguous failure localization (UFL) of any single SRLG failure. © 2010 IEEE.

关键词： MESH networking

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A tensor algebraic framework for the intuitive exploration of sensory substitution spaces

A tensor algebraic framework for the intuitive exploration o...

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8th IEEE International Symposium on Intelligent Systems and informatics, SIISY 2010

作者： Csapo, Adam Baranyi, Peter Budapest University of Technology and Economics Dept. of Telecommunications and Media Informatics Budapest Hungary Computer and Automation Research Institute Budapest Hungary

ISBN: (纸本)9781424473946

We refer to channels of communication that link the user to information systems as cognitive communication channels. One especially interesting research topic related to cognitive communication channels deals with a special application called sensory substitution, when information is conveyed through a channel other than the one that is normally used for the given application. Our goal is to develop engineering systems for the remote teleoperation of robots using sensory substitution to convey feedback information in meaningful ways. Such applications could help reduce the cognitive load for the user on the one hand, and help alleviate the effect of control instabilities and hidden parameters on the other. In this paper, we present a tensor algebraic approach for the compact representation of complete sensory substitution channels. Using HOSVD, we transform our representations into canonical, orthogonal forms. Through a combination of rank-reduction and error compensation techniques, we propose an iterative and hierarchical parameter space exploration method which may help users tune the generated sensory substituted signals in a more intuitive fashion. As an application example, we present a mapping between tactile percepts and auditory parameters in order to convey the tactile experience of a robot to a remote user through sound. In order to be able to apply a wide a wide range of mathematical analysis tools - such as principal component analysis and user performance-oriented adaptivity - we demonstrate that it is possible to convert our models into HOSVD-based canonical forms. The verification of the enhanced parameter space exploration method using rank reduction and error compensation in this application remains part of our future work. ©2010 IEEE.

关键词： Principal component analysis

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Tensor product model transformation based friction compensation of a mechatronic system

Tensor product model transformation based friction compensat...

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14th International Conference on Intelligent Engineering Systems, INES 2010

作者： Takarics, Béla Korondi, Péter Baranyi, Péter Dept. of Mechatronics Optics and Engineering Informatics Budapest University of Technology and Economics Budapest Hungary Cognitive Informatics Research Group Computer and Automation Research Institute Budapest Hungary

ISBN: (纸本)9781424476527

The Tensor Product (TP) model transformation is a recently proposed technique for transforming given Linear Parameter-Varying (LPV) state-space models into polytopic model form, namely, to parameter-varying convex combination of Linear Time Invariant (LTI) systems. The main advantage of the TP model transformation is that it is executable in a straightforward way and the Linear Matrix Inequality (LMI) based control design frameworks can immediately be applied to the resulting polytopic models to yield controllers with tractable and guaranteed performance. The main contribution of this paper is that it represents the friction of a DC servo drive in TP model form, automatically designs LMI based controller for friction compensation. The reference signal compensation is also based on the TP model transformation. The results were simulated for speed control of the DC servo drive and were compared to other control techniques. © 2010 IEEE.

关键词： Controllers

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Towards a numerically tractable model for the auditory substitution of tactile percepts

Towards a numerically tractable model for the auditory subst...

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International Symposium on Resilient Control Systems

ISBN: (纸本)9781424459544

We refer to channels of communication that link the user to information systems as cognitive communication channels. One especially interesting research topic related to cognitive communication channels deals with a special application called sensory substitution, when information is conveyed through a channel other than the one that is normally used for the given application. Our goal is to develop engineering systems for the remote teleoperation of robots using sensory substitution to convey feedback information in meaningful ways. Such applications could help reduce the cognitive load for the user on the one hand, and help alleviate the effect of control instabilities and hidden parameters on the other. A large part of our research deals with how to provide information on tactile percepts-otherwise inaccessible to the remote user - through sound. In this paper, we present one possible mapping between tactile percepts and auditory parameters. Through a set of controlled experiments, we show that the parameters used are meaningful and the sounds can at some level be learned by users as a substitute for tactile perception. Analyzing the error statistics of the experiments, we argue that it would be worthwhile to create a system in which the sound parameters could be locally tuned to enhance performance on a user-per-user basis. To this end, we convert the analytical descriptions of our sounds into an higher-order singular value decomposition (HOSVD) based tensor product model form. In order to be able to apply a wide range of mathematical analysis tools - such as principal component analysis and user performance-oriented adaptivity - we demonstrate that it is possible to convert our models into such canonical forms. © 2010 IEEE.

关键词： Tensors

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