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Author Correction: Full reconstruction of simplicial complexes from binary contagion and Ising data

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Nature communications 2022年第1期13卷 3692页

作者： Huan Wang Chuang Ma Han-Shuang Chen Ying-Cheng Lai Hai-Feng Zhang The Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education School of Mathematical Science Anhui University Hefei 230601 China. School of Internet Anhui University Hefei 230601 China. School of Physics and Material Science Anhui University Hefei 230601 China. School of Electrical Computer and Energy Engineering Arizona State University Tempe AZ 85287 USA. The Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education School of Mathematical Science Anhui University Hefei 230601 China. haifengzhang1978@***.

GoSum: Extractive Summarization of Long Documents by Reinforcement Learning and Graph Organized discourse state

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arXiv 2022年

作者： Bian, Junyi Huang, Xiaodi Zhou, Hong Zhu, Shanfeng School of Computer Science Fudan University Shanghai200433 China School of Computing and Mathematics Charles Sturt University AlburyNSW2640 Australia Atypon Systems LLC United Kingdom Institute of Science and Technology for Brain-Inspired Intelligence Fudan University China Ministry of Education Shanghai200433 China MOE Frontiers Center for Brain Science Fudan University Shanghai200433 China Zhangjiang Fudan International Innovation Center Shanghai200433 China Shanghai Key Lab of Intelligent Information Processing Fudan University Shanghai200433 China

Extracting summaries from long documents can be regarded as sentence classification using the structural information of the documents. How to use such structural information to summarize a document is challenging. In this paper, we propose GoSum, a novel graph and reinforcement learning based extractive model for long-paper summarization. In particular, GoSum encodes sentence states in reinforcement learning by building a heterogeneous graph for each input document at different discourse levels. An edge in the graph reflects the discourse hierarchy of a document for restraining the semantic drifts across section boundaries. We evaluate GoSum on two datasets of scientific articles summarization: PubMed and arXiv. The experimental results have demonstrated that GoSum achieve state-of-the-art results compared with strong baselines of both extractive and abstractive models. The ablation studies further validate that the performance of our GoSum benefits from the use of discourse information. Copyright © 2022, The Authors. All rights reserved.

关键词： Reinforcement learning

Two weight Zpk -codes, p odd prime

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arXiv 2017年

作者： Shi, Minjia Sepasdar, Zahra Solé, Patrick Key Laboratory of Intelligent Computing & Signal Processing Ministry of Education Anhui University No. 3 Feixi Road Hefei Anhui Province230039 China National Mobile Communications Research Laboratory Southeast University Nanjing210096 China School of Mathematical Sciences of Anhui University Hefei230601 China Department of Pure Mathematics Ferdowsi University of Mashhad P. O. Box 1159 Mashhad91775 Iran CNRS/LTCI Telecom ParisTech University of Paris-Saclay Paris75 013 France Department of Mathematics Faculty of Science King Abdulaziz University Jeddah21589 Saudi Arabia

We show that regular homogeneous two-weight Zpk -codes where p is odd and k ≥ 2 with dual Hamming distance at least four do not exist. The proof relies on existence conditions for the strongly regular graph built on ... 详细信息

关键词： Hamming distance

Graphene based functional devices: A short review

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arXiv 2018年

作者： Wang, Rong Jiang, Lijun Ren, Xingang Yan, Ze Sha, Wei E.I. Shan, Guangcun Department of Electrical and Electronic Engineering University of Hong Kong Pokfulam Road Hong Kong Key Laboratory of Intelligent Computing & Signal Processing Ministry of Education Anhui University Hefei230039 China School of Instrumentation Science & Opto-electronics Engineering Beihang University Beijing100191 China Key Laboratory of Micro-nano Electronic Devices and Smart Systems of Zhejiang Province College of Information Science & Electronic Engineering Zhejiang University Hangzhou310027 China School of Instrumentation Science & Opto-electronics Engineering Beihang University Beijing100191 China California NanoSystem Institute Department of Chemistry & Biochemistry University of California Los AngelesCA90095 United States

Graphene is an ideal 2D material system bridging electronic and photonic devices. It also breaks the fundamental speed and size limits by electronics and photonics, respectively. Graphene offers multiple functions of signal transmission, emission, modulation, and detection in a broad band, high speed, compact size, and low loss. Here, we will have a brief view of graphene based functional devices at microwave, terahertz, and optical frequencies. Their fundamental physics and computational models will be discussed as well. Copyright © 2018, The Authors. All rights reserved.

关键词： Graphene

Corrigendum to “Integrated production and transportation on parallel batch machines to minimize total weighted delivery time” [Computers and Operations Research Volume 102, pages 39–51]

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Computers & Operations Research 2019年 105卷 248-248页

作者： Zhao-hong Jia Xue-xue Zhuo Joseph Y.-T. Leung Kai Li Key Lab of Intelligent Computing and Signal Processing of Ministry of Education Anhui University Hefei Anhui 230039 P.R. China Department of Computer Science New Jersey Institute of Technology Newark NJ 07102 USA School of Management Hefei University of Technology Hefei Anhui 230009 P.R. China

Nitrogen vertical distribution by canopy reflectance spectrum in winter wheat

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IOP Conference Series: Earth and Environmental Science 2014年第1期17卷

作者： W J Huang Q Y Yang D L Peng L S Huang D Y Zhang G J Yang Key Laboratory of Digital Earth Science Institute of Remote Sensing and Digital Earth Chinese Academy of Sciences Beijing 100094 China Key Laboratory of Intelligent Computing & Signal Processing Ministry of Education Anhui University Hefei 230039 Anhui China Beijing Agriculture Information Technology Research Center Beijing 100097 China

Nitrogen is a key factor for plant photosynthesis, ecosystem productivity and leaf respiration. Under the condition of nitrogen deficiency, the crop shows the nitrogen deficiency symptoms in the bottom leaves, while excessive nitrogen will affect the upper layer leaves first. Thus, timely measurement of vertical distribution of foliage nitrogen content is critical for growth diagnosis, crop management and reducing environmental impact. This study presents a method using bi-directional reflectance difference function (BRDF) data to invert foliage nitrogen vertical distribution. We developed upper-layer nitrogen inversion index (ULNI), middle-layer nitrogen inversion index (MLNI) and bottom-layer nitrogen inversion index (BLNI) to reflect foliage nitrogen inversion at upper layer, middle layer and bottom layer, respectively. Both ULNI and MLNI were made by the value of the ratio of Modified Chlorophyll Absorption Ration Index to the second Modified Triangular Vegetation Index (MCARI/MTVI2) referred to as canopy nitrogen inversion index (CNII) in this study at ±40° and ±50°, and at ±30° and ±40° view angles, respectively. The BLNI was composed by the value of nitrogen reflectance index (NRI) at ±20° and ±30° view angles. These results suggest that it is feasible to measure foliage nitrogen vertical-layer distribution in a large scale by remote sensing.

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Drug3D-DTI: Improved Drug-target Interaction Prediction by Incorporating Spatial Information of Small Molecules

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Drug3D-DTI: Improved Drug-target Interaction Prediction by I...

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Zhirui Liao Xiaodi Huang Hiroshi Mamitsuka Shanfeng Zhu School of Computer Science Fudan University Shanghai China Institute of Artificial Intelligence Biomedicine Nanjing University Nanjing China School of Computing Mathematics and Engineering Charles Sturt University Albury NSW Australia Bioinformatics Center Institute for Chemical Research Kyoto University Uji Kyoto Japan Institute of Science and Technology for Brain-Inspired Intelligence Fudan University Shanghai China Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University) Ministry of Education China MOE Frontiers Center for Brain Science Fudan University Shanghai China Zhangjiang Fudan International Innovation Center Shanghai China Shanghai Key Lab of Intelligent Information Processing Fudan University Shanghai China

ISBN: (纸本)9781665429825

A number of machine learning (ML) approaches for drug discovery have been available that rely only on sequential (1D) and planar (2D) information without effectively using the 3D information for generating features of drugs. However, 3D information of small molecules can reflect relative position of atoms more directly, which affects molecular properties. In this work, we present a new deep learning model called Drug3D-DTI for drug-target interaction prediction. Drug3D-DTI takes advantage of molecular spatial information, i.e., atom proximity in three-dimensional (3D) structures. We comprehensively evaluated the performance of Drug3D-DTI on two datasets with two tasks of regression and classification. In particular, we compared Drug3D-DTI with several existing methods including the two cutting-edge methods for compound-protein interaction prediction. From the experimental results, Drug3D-DTI clearly outperformed other methods under all settings. Further, this performance improvement was validated by ablation experiments and a case study. The implementation of Drug3D-DTI is available at (https://***/zhiruiliao/Drug3D-DTI).

关键词： Drugs Proteins Deep learning Solid modeling Three-dimensional displays Conferences Predictive models

Cross-Modality Coherent Registration of Whole Mouse Brains

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Research Square

Research Square 2021年

作者： Peng, Hanchuan Qu, Lei Li, Yuanyuan Xie, Peng Liu, Lijuan Wang, Yimin Wu, Jun Liu, Yu Wang, Tao Li, Longfei Guo, Kaixuan Wan, Wan Ouyang, Lei Xiong, Feng Zheng, Yefeng Xu, Fang Gong, Hui Dong, Hongwei Luo, Qingming Bi, Guo-Qiang Hawrylycz, Michael Zeng, Hongkui Allen Institute for Brain Science United States Key Laboratory of Intelligent Computation & Signal Processing Ministry of Education Anhui University China SEU-ALLEN Joint Center Institute for Brain Intelligence Southeast University Bangladesh Institute for Brain and Intelligence Southeast University Bangladesh Tencent Jarvis Lab China CAS Key Laboratory of Brain Connectome and Manipulation China Britton Chance Center for Biomedical Photonics Wuhan National Laboratory for Optoelectronics MoE Key Laboratory for Biomedical Photonics Huazhong University of Science and Technology China Center for Integrative Connectomics Department of Neurobiology David Geffen School of Medicine UCLA United States Hainan University China Hefei National Laboratory for Physical Sciences at the Microscale School of Life Sciences University of Science and Technology of China China

Recent whole brain mapping projects are collecting large-scale 3D images using powerful and informative modalities, such as STPT, fMOST, VISoR, or MRI. Registration of these multi-dimensional whole-brain images onto a standard atlas is essential for characterizing neuron types and constructing brain wiring diagrams. However, cross-modality image registration is challenging due to intrinsic variations of brain anatomy and artifacts resulted from different sample preparation methods and imaging modalities. We introduced a cross-modality registration method, called mBrainAligner, which uses coherent landmark mapping as well as deep neural networks to align whole mouse brain images to the standard Allen Common Coordinate Framework atlas. We also built a single cell resolution atlas using the fMOST modality, and used our method to generate whole brain map of 3D full single neuron morphology and neuron cell types. © 2021, CC BY.

关键词： Brain mapping

Cavity-Quantum Electrodynamics with Moiré Flatband Photonic Crystals

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arXiv 2024年

作者： Wang, Yu-Tong Ye, Qi-Hang Yan, Jun-Yong Qiao, Yufei Chen, Chen Cheng, Xiao-Tian Li, Chen-Hui Zhang, Zi-Jian Huang, Cheng-Nian Meng, Yun Zou, Kai Zhan, Wen-Kang Zhao, Chao Hu, Xiaolong Tee, Clarence Augustine T.H. Sha, Wei E.I. Huang, Zhixiang Liu, Huiyun Jin, Chao-Yuan Ying, Lei Liu, Feng State Key Laboratory of Extreme Photonics and Instrumentation College of Information Science and Electronic Engineering Zhejiang University Hangzhou310027 China School of Physics Zhejiang Key Laboratory of Micro-nano Quantum Chips and Quantum Control Zhejiang University Hangzhou310027 China School of Precision Instrument and Optoelectronic Engineering Tianjin University Tianjin300072 China Key Laboratory of Optoelectronic Information Science and Technology Ministry of Education Tianjin300072 China Laboratory of Solid State Optoelectronics Information Technology Institute of Semiconductors Chinese Academy of Sciences Beijing100083 China College of Materials Science and Opto-Electronic Technology University of Chinese Academy of Science Beijing101804 China College of Physics and Electrical Information Engineering Zhejiang Normal University Hangzhou310058 China Key Laboratory of Intelligent Computing and Signal Processing Ministry of Education Anhui University Hefei230039 China Department of Electronic and Electrical Engineering University College London LondonWC1E 7JE United Kingdom International Joint Innovation Center Zhejiang University Haining314400 China

Quantum emitters are a key component in photonic quantum technologies. Enhancing their single-photon emission by engineering the photonic environment using cavities can improve the overall efficiency in quantum information processing. However, this enhancement is often limited by the need for precise nanoscale control over emitter’s position within micro/nano-cavities. Inspired by the fascinated physics of moiré pattern, we present an approach to strongly modify the spontaneous emission rate of a quantum emitter using fine-designed multilayer moiré photonic crystal with a robust isolate-flatband dispersion. Theoretical analysis reveals that due to its nearly infinite photonic density of states, the moiré cavity can simultaneously possess high Purcell factor and large tolerance over emitter’s position. We experimentally demonstrate the coupling between this moiré cavity and a quantum dot via the cavity-determined polarization of the dot’s emission. The radiative lifetime of the quantum dot can be tuned by a factor of 40 from 42 ps to 1692 ps, attributed to strong Purcell enhancement and Purcell inhibition effects. Our findings pave the way for moiré flatband cavity-enhanced quantum light sources, quantum optical switches and quantum nodes for quantum internet. Copyright © 2024, The Authors. All rights reserved.

关键词： Particle beams