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Multi Level Clustering of Phylogenetic Profiles

Multi Level Clustering of Phylogenetic Profiles

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IEEE Symposium on Bioinformatics and Bioengineering (BIBE)

作者： Fotis E. Psomopoulos Pericles A. Mitkas Intelligent Systems and Software Engineering Laboratory Informatics and Telematics Institute Thessaloniki Greece Department of Electrical and Computer Engineering Aristotle University of Thessaloniki Thessaloniki Greece

The prediction of gene function from genome sequences is one of the main issues in Bioinformatics. Most computational approaches are based on the similarity between sequences to infer gene function. However, the availability of several fully sequenced genomes has enabled alternative approaches, such as phylogenetic profiles. Phylogenetic profiles are vectors which indicate the presence or absence of a gene in other genomes. The main concept of phylogenetic profiles is that proteins participating in a common structural complex or metabolic pathway are likely to evolve in a correlated fashion. In this paper, a multi level clustering algorithm of phylogenetic profiles is presented, which aims to detect inter- and intra-genome gene clusters.

关键词： Phylogeny Bioinformatics Genomics Clustering algorithms Databases Proteins Biomedical engineering Intelligent systems Computational intelligence software engineering

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Notice of Retraction: Student evaluation through Student Idol

Notice of Retraction: Student evaluation through Student Ido...

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International Conference on Education Technology and computer, ICETC

作者： Roslina binti Mohd Sidek Noraziah Ahmad Mohd Helmy Abd Wahab Faculty of Computer Systems and Software Engineering Universiti Malaysia Pahang Malaysia Faculty of Electrical and Electronic Engineering Universiti Tun Hussein Onn Malaysia Malaysia

This article has been retracted by the publisher.

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Energy-aware loop parallelism maximization for multi-core DSP architectures

Energy-aware loop parallelism maximization for multi-core DS...

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2010 IEEE/ACM International Conference on Green Computing and Communications, GreenCom 2010, 2010 IEEE/ACM International Conference on Cyber, Physical and Social Computing, CPSCom 2010

作者： Qiu, Meikang Niu, Jian-Wei Yang, Laurence T. Qin, Xiao Zhang, Senlin Wang, Bin Department of Electrical and Computer Engineering University of Kentucky Lexington KY 40506 United States State Key Lab. of Software Develop. Environment Beihang University Beijing 100191 China Department of Computer Science St. Francis Xavier University Antigonish NS B2G 2W5 Canada Dept. of Computer Science and Software Engineering Auburn University Auburn AL 36849 United States Dept. of Systems Science and Engineering Zhejiang University Hangzhou 310027 China Dept. of Computer Science and Engineering Wright State University Dayton OH 45435 United States

ISBN: (纸本)9780769543314

With the advance of semiconductor, multi-core architecture is inevitable in today's embedded system design. Nested loops are usually the most critical part in multimedia and high performance DSP (Digital Signal Processing) systems. Hence, maximizing loop parallelism is an important issue to improve the performance of a modern compiler. This paper studies how to maximize the system performance with the consideration of energy reduction for applications with multidimensional nested loops on multi-core DSP architectures. An algorithm, EALPM (Energy-Aware Loop Parallelism Maximization), is proposed in this paper. We implemented a two phase strategy. First, the strategy uses retiming and loop transformation to parallelize nested loops. Then the strategy employs a novel voltage assignment algorithm to reduce total energy consumption. The experimental results show that on average, both performance and energy-saving can be significantly improved using the EALPM algorithm. © 2010 IEEE.

关键词： Digital signal processing

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Towards a Metrics Suite for Measuring Composite Service Granularity Level Appropriateness

Towards a Metrics Suite for Measuring Composite Service Gran...

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IEEE World Congress on Services (SERVICES)

作者： A. Khoshkbarforoushha R. Tabein P. Jamshidi F. Shams Automated Software Engineering Research Group Electrical and Computer Engineering Faculty Shahid Beheshti University Tehran Iran Department of Computer and Systems Sciences Royal Institute of Technology Stockholm Sweden

One of the prominent principles of designing services is the matter of how abstract services should be i.e. granularity. Since service-oriented analysis and design methods lack on providing a quantitative model for service granularity level evaluation, identification of optimally granular services is the key challenge in service-oriented solution development. This article through a systematic process proposes a model namely Weighted Granularity Level Appropriateness (WGLA) which leverages and consolidates four metrics to constitute quantitative basis for granularity appropriateness analysis. These metrics are, indeed, the four quantified attributes of service granularity including business value, reusability, context-independency, and complexity. Our preliminary controlled experiment confirms the correctness of the quantitative model. In fact, by adopting WGLA metric, service granularity appropriateness analysis could be conduct quantitatively that leads to realize an optimized service-oriented solution in terms of its granularity.

关键词： Business Measurement Complexity theory Analytical models Service oriented architecture software

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Hardware/software co-design for high performance computing: Challenges and opportunities 10

Hardware/software co-design for high performance computing: ...

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Proceedings of the eighth IEEE/ACM/IFIP international conference on Hardware/software codesign and system synthesis

作者： Hu, X. Sharon Murphy, Richard C. Dosanjh, Sudip Olukotun, Kunle Poole, Stephen Department of Computer Science and Engineering University of Notre Dame Notre Dame IN United States Scalable Computer Architecture Department Sandia National Laboratories Albuquerque NM United States Computer and Software Systems Department Sandia National Laboratories Albuquerque NM United States Department of Electrical Engineering Stanford University Stanford CA United States Computational Sciences Division Oak Ridge National Lab Oak Ridge TN United States

ISBN: (纸本)9781605589053

This special session aims to introduce to the hardware/software codesign community challenges and opportunities in designing high performance computing (HPC) systems. Though embedded system design and HPC system design have traditionally been considered as two separate areas of research, they in fact share quite some common features, especially as CMOS devices continue along their scaling trends and the HPC community hits hard power and energy limits. Understanding the similarities and differences between the design practices adopted in the two areas will help bridge the two communities and lead to design tool developments benefiting both communities.

关键词： Hardware-software codesign

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On power and fault-tolerance optimization in FPGA physical synthesis 10

On power and fault-tolerance optimization in FPGA physical s...

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IEEE International Conference on computer-Aided Design

作者： Manu Jose Yu Hu Rupak Majumdar Computer Science Department University of California Los Angeles USA Electrical and Computer Engineering Department University of Alberta Canada Max Planck Institute for Software Systems Kaiserslautern Germany

ISBN: (纸本)9781424481927

Power and fault tolerance are deemed to be two orthogonal optimization objectives in FPGA synthesis, with independent attempts to develop algorithms and CAD tools to optimize each objective. In this paper, we study the relationship between these two optimizations and show empirically that there are strong ties between them. Specifically, we analyze the power and reliability optimization problems in FPGA physical synthesis (i.e., packing, placement, and routing), and show that the intrinsic structures of these two problems are very similar. Supported by the post routing results with detailed power and reliability analysis for a wide selection of benchmark circuits, we show that with minimal changes - fewer than one hundred lines of C code - an existing power-aware physical synthesis tool can be used to minimize the fault rate of a circuit under SEU faults. As a by-product of this study, we also show that one can improve the mean-time-to-failure by 100% with negligible area and delay overhead by performing fault-tolerant physical synthesis for FPGAs. The results from this study show a great potential to develop CAD systems co-optimized for power and fault-tolerance.

关键词： Fault tolerance Fault tolerant systems Circuit faults Sensitivity Optimization Routing Table lookup

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Distributed diagnosis of complex systems using timed failure propagation graph models

Distributed diagnosis of complex systems using timed failure...

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International Automatic Testing Conference, AUTOTESTCON

作者： Nagabhushan Mahadevan Sherif Abdelwahed Abhishek Dubey Gabor Karsai Institute for Software Integrated Systems Vanderbilt University Nashville TN USA Department of Electrical and Computer Engineering Mississippi State University Starkville MS USA

Timed failure propagation graph (TFPG) is a directed graph model that represents temporal progression of failure effects in physical systems. In this paper, a distributed diagnosis approach for complex systems is introduced based on the TFPG model settings. In this approach, the system is partitioned into a set of local subsystems each represented by a subgraph of the global system TFPG model. Information flow between subsystems is achieved through special input and output nodes. A high level diagnoser integrates the diagnosis results of the local subsystems using an abstract high level model to obtain a globally consistent diagnosis of the system.

关键词： Cognition Computational modeling Monitoring Semantics software Switches Synchronization

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Hardware/software co-design for high performance computing: Challenges and opportunities

Hardware/software co-design for high performance computing: ...

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ISBN: (纸本)9781605589053

关键词： Hardware-software codesign

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Adaptive and impulsive cluster synchronization of a general complex dynamical network

Adaptive and impulsive cluster synchronization of a general ...

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IEEE International Conference on Networking, Sensing and Control

作者： Bingxiong Shi Junan Lu Jinhu Lu Xinghuo Yu College of Mathematics and Statistics and State Key Laboratory of Software Engineering Wuhan University of China Wuhan China School of Electrical and Computer Engineering RMIT University Melbourne Australia Key Laboratory of Systems and Control Institute of Systems Science Chinese Academy and Sciences Beijing China School of Electrical and Computer Engineering RMIT University Melbourne VIC Australia

ISBN: (纸本)9781424464500;9781424464531

Recently, cluster synchronization has attracted an increasing interest in various disciplines, including mathematics, physics, and engineering sciences. This paper further investigates the cluster synchronization of a complex dynamical network by using adaptive and impulsive control techniques, respectively. Based on a complex dynamical network with two different clusters, several adaptive and impulsive cluster synchronization criteria are then proposed. It should be especially pointed out that the dynamics and its dimensions of the individual dynamical systems are different in the two different clusters. Also, some numerical simulations are given to verify the effectiveness of the above theoretical results.

关键词： Complex networks Mathematics Numerical simulation Physics Adaptive systems Programmable control Adaptive control Biology History Technological innovation

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Filling the gap of Information Security Management inside ITIL®: Proposals for posgraduate students

Filling the gap of Information Security Management inside IT...

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IEEE Education engineering (EDUCON)

作者： Elena Ruiz Larrocha Jesús M. Minguet Gabriel Díaz Manuel Castro Alfonso Vara Software Engineering and Informatics Systems Department UNED - Spanish University for Distance Education Madrid Spain Electrical and Computer Department UNED - Spanish University for Distance Education Madrid Spain

This paper describes different proposals made at UNED, for post-graduated students, at the area of IT Services Management and specially trying to fill the gap, of paramount importance, of the treatment due in ITIL ® (Information Technology Infrastructure Library) to Information Security Management. We analyze the treatment given to Information Security Management in ITIL, both versions 2 and 3, and describe the different at distance post-graduated courses we offer that fill these methodologies and discuss the opinions and evaluations of our students.

关键词： Filling Information security Information management Information technology Business Technology management Libraries Proposals Distance learning ISO standards

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