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Single-molecule localization microscopy reveals the ultrastructural constitution of distal appendages in expanded mammalian centrioles

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Nature communications 2023年第1期14卷 1688页

作者： Ting-Jui Ben Chang Jimmy Ching-Cheng Hsu T Tony Yang Department of Physics National Taiwan University Taipei Taiwan. Department of Electrical Engineering National Taiwan University Taipei Taiwan. Nano Science and Technology Program Taiwan International Graduate Program Academia Sinica and National Taiwan University Taipei Taiwan. Department of Electrical Engineering National Taiwan University Taipei Taiwan. tonyyang@ntu.edu.tw. Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei Taiwan. tonyyang@ntu.edu.tw.

Distal appendages (DAPs) are vital in cilia formation, mediating vesicular and ciliary docking to the plasma membrane during early ciliogenesis. Although numerous DAP proteins arranging a nine-fold symmetry have been studied using superresolution microscopy analyses, the extensive ultrastructural understanding of the DAP structure developing from the centriole wall remains elusive owing to insufficient resolution. Here, we proposed a pragmatic imaging strategy for two-color single-molecule localization microscopy of expanded mammalian DAP. Importantly, our imaging workflow enables us to push the resolution limit of a light microscope well close to a molecular level, thus achieving an unprecedented mapping resolution inside intact cells. Upon this workflow, we unravel the ultra-resolved higher-order protein complexes of the DAP and its associated proteins. Intriguingly, our images show that C2CD3, microtubule triplet, MNR, CEP90, OFD1, and ODF2 jointly constitute a unique molecular configuration at the DAP base. Moreover, our finding suggests that ODF2 plays an auxiliary role in coordinating and maintaining DAP nine-fold symmetry. Together, we develop an organelle-based drift correction protocol and a two-color solution with minimum crosstalk, allowing a robust localization microscopy imaging of expanded DAP structures deep into the gel-specimen composites.

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Ferroelectric transistors based on shear-transformation-mediated rhombohedral-stacked molybdenum disulfide

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Nature Electronics 2024年第1期7卷 29-38页

作者： Yang, Tilo H. Liang, Bor-Wei Hu, Hsiang-Chi Chen, Fu-Xiang Ho, Sheng-Zhu Chang, Wen-Hao Yang, Liu Lo, Han-Chieh Kuo, Tzu-Hao Chen, Jyun-Hong Lin, Po-Yen Simbulan, Kristan Bryan Luo, Zhao-Feng Chang, Alice Chinghsuan Kuo, Yi-Hao Ku, Yu-Seng Chen, Yi-Cheng Huang, You-Jia Chang, Yu-Chen Chiang, Yu-Fan Lu, Ting-Hua Lee, Min-Hung Li, Kai-Shin Wu, Menghao Chen, Yi-Chun Lin, Chun-Liang Lan, Yann-Wen Department of Physics National Taiwan Normal University Taipei Taiwan Taiwan Semiconductor Research Institute National Applied Research Laboratories Hsinchu Taiwan Department of Electrophysics National Yang Ming Chiao Tung University Hsinchu Taiwan Department of Physics National Cheng Kung University Tainan Taiwan School of Physics Huazhong University of Science and Technology Wuhan China Institute of Cellular and Organismic Biology Academia Sinica Taipei Taiwan Department of Mathematics and Physics University of Santo Tomas Manila Philippines Program for Semiconductor Devices Materials and Hetero-integration Graduate School of Advanced Technology National Taiwan University Taipei Taiwan Hsinchu Taiwan Department of Physics National Taiwan University Taipei Taiwan Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology CambridgeMA United States

To develop low-power, non-volatile computing-in-memory device using ferroelectric transistor technologies, ferroelectric channel materials with scaled thicknesses are required. Two-dimensional semiconductors, such as molybdenum disulfide (MoS2), equipped with sliding ferroelectricity could provide an answer. However, achieving switchable electric polarization in epitaxial MoS2 remains challenging due to the absence of mobile domain boundaries. Here we show that polarity-switchable epitaxial rhombohedral-stacked (3R) MoS2 can be used as a ferroelectric channel in ferroelectric memory transistors. We show that a shear transformation can spontaneously occur in 3R MoS2 epilayers, producing heterostructures with stable ferroelectric domains embedded in a highly dislocated and unstable non-ferroelectric matrix. This diffusionless phase transformation process produces mobile screw dislocations that enable collective polarity control of 3R MoS2 via an electric field. Polarization–electric-field measurements reveal a switching field of 0.036 V nm−1 for shear-transformed 3R MoS2. Our sliding ferroelectric transistors are non-volatile memory units with thicknesses of only two atomic layers and exhibit an average memory window of 7 V with an applied voltage of 10 V, retention times greater than 104 seconds and endurance greater than 104 cycles. © 2023, The Author(s), under exclusive licence to Springer Nature Limited.

关键词： Molybdenum disulfide

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Air-liquid microfluidics-integrated surface-enhanced Raman spectroscopy for selective molecular adsorption and detection to achieve bacterial discrimination

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Biosensors and Bioelectronics 2025年 285卷 117576页

作者： Ku, Chi-Yao Chiang, Yu-Wei Hsu, Huai-Yuan Cheng, Ho-Wen Chen, Ko-Lun Han, Yin-Yi Wang, Juen-Kai Wang, Yuh-Lin Huang, Nien-Tsu Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei Taiwan Institute of Atomic and Molecular Sciences Academia Sinica Taipei Taiwan Molecular Science and Technology Taiwan International Graduate Program Academia Sinica Taipei Taiwan International Graduate Program of Molecular Science and Technology National Taiwan University Taipei Taiwan Department of Anesthesiology National Taiwan University Hospital Taipei100229 Taiwan Department of Trauma National Taiwan University Hospital Taipei100229 Taiwan Center for Condensed Matter Sciences National Taiwan University Taipei Taiwan Center for Atomic Initiative for New Materials National Taiwan University Taipei Taiwan Department of Electrical Engineering National Taiwan University Taipei Taiwan

Bacterial discrimination is crucial for accurate microbiological diagnosis and timely antibiotic treatment. Surface-enhanced Raman spectroscopy (SERS) is an ideal technique due to its non-invasive, label-free molecular sensing capabilities. By analyzing bacterial supernatants, containing various purine derivatives, SERS can differentiate bacterial species based on their unique spectral distributions. However, the same bacterial species with different antibiotic resistance may secrete similar purine derivatives, differing only slightly in composition. Furthermore, each purine derivative may have a different molecular affinity to the SERS substrate, making it difficult to distinguish the exact molecular ratio. To improve SERS-based bacterial discrimination, we propose an air-liquid microfluidics-integrated SERS system (ALM-SERS) that selectively adsorbs and detects bacterial secretions. By taking features of precise microdroplet manipulation and contact area from microfluidics and features of selective molecular adsorption and fingerprints characterization from the SERS technique, we successfully perform a "sequential molecular adsorption" strategy to address the signal interference of complicated molecular mixtures in existing SERS methods. As a proof of concept, we first evaluate the molecular affinity of purine derivatives and then demonstrate the competitive analyte adsorption using adenine/cytosine and hypoxanthine/uracil sample mixtures. Finally, we tested six bacterial supernatants, including two Gram types and four strains with identical taxonomy but differing antibiotic resistance. Another six clinically isolated bacterial samples with different antibiotic resistance were also applied. Our results showed that a successful bacterial discrimination between similar species was not possible using a single SERS spectrum. In summary, the ALM-SERS system offers a powerful approach for bacterial discrimination, even when spectral differences are subtle. Beyond microb

关键词： Raman spectroscopy

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Enhanced Superconducting Qubit Performance Through Ammonium Fluoride Etch

arXiv

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arXiv 2024年

作者： Kopas, Cameron J. Goronzy, Dominic P. Pham, Thang Torres Castanedo, Carlos G. Cheng, Matthew Cochrane, Rory Nast, Patrick Lachman, Ella Zhelev, Nikolay Z. Vallières, André Murthy, Akshay A. Oh, Jin-Su Zhou, Lin Kramer, Matthew J. Cansizoglu, Hilal Bedzyk, Michael J. Dravid, Vinayak P. Romanenko, Alexander Grassellino, Anna Mutus, Josh Y. Hersam, Mark C. Yadavalli, Kameshwar Rigetti Computing BerkeleyCA United States Department of Materials Science and Engineering Northwestern University EvanstonIL United States Center for Applied Physics and Superconducting Technologies Northwestern University EvanstonIL United States Department of Physics and Astronomy Northwestern University EvanstonIL United States Department of Physics University of Oregon EugeneOR United States Graduate Program in Applied Physics Northwestern University EvanstonIL60208 United States Fermi National Accelerator Laboratory BataviaIL United States Ames Laboratory U.S. Department of Energy AmesIA United States Northwestern University EvanstonIL United States Department of Chemistry Northwestern University EvanstonIL United States Department of Electrical and Computer Engineering Northwestern University EvanstonIL United States

The performance of superconducting qubits is often limited by dissipation and two-level systems (TLS) losses. The dominant sources of these losses are believed to originate from amorphous materials and defects at interfaces and surfaces, likely as a result of fabrication processes or ambient exposure. Here, we explore a novel wet chemical surface treatment at the Josephson junction-substrate and the substrate-air interfaces by replacing a buffered oxide etch (BOE) cleaning process with one that uses hydrofluoric acid followed by aqueous ammonium fluoride. We show that the ammonium fluoride etch process results in a statistically significant improvement in median T1 by ∼ 22% (p = 0.002), and a reduction in the number of strongly-coupled TLS in the tunable frequency range. Microwave resonator measurements on samples treated with the ammonium fluoride etch prior to niobium deposition also show ∼ 33% lower TLS-induced loss tangent compared to the BOE treated samples. As the chemical treatment primarily modifies the Josephson junction-substrate interface and substrate-air interface, we perform targeted chemical and structural characterizations to examine materials’ differences at these interfaces and identify multiple microscopic changes that could contribute to decreased TLS. © 2024, CC BY-NC-ND.

关键词： Fluorine compounds

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Magnetically Tuned Continuous Transition from Weak to Strong Coupling in Terahertz Magnon Polaritons

arXiv

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arXiv 2022年

作者： Baydin, Andrey Hayashida, Kenji Makihara, Takuma Tay, Fuyang Ma, Xiaoxuan Ren, Wei Ma, Guohong Noe, G. Timothy Katayama, Ikufumi Takeda, Jun Nojiri, Hiroyuki Cao, Shixun Bamba, Motoaki Kono, Junichiro Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States The Smalley-Curl Institute Rice University HoustonTX77005 United States Division of Applied Physics Graduate School of Engineering Hokkaido University Hokkaido Sapporo060-8628 Japan Department of Physics and Astronomy Rice University HoustonTX77005 United States Applied Physics Graduate Program Smalley-Curl Institute Rice University HoustonTX77005 United States Department of Physics International Center of Quantum and Molecular Structures Materials Genome Institute Shanghai University Shanghai200444 China Department of Physics Graduate School of Engineering Science Yokohama National University Yokohama240-8501 Japan Institute for Materials Research Tohoku University Sendai980-8577 Japan The Hakubi Center for Advanced Research Kyoto University Kyoto606-8502 Japan Department of Physics I Kyoto University Kyoto606-8502 Japan PRESTO Japan Science and Technology Agency Kawaguchi332-0012 Japan Department of Materials Science and NanoEngineering Rice University HoustonTX77005 United States

Depending on the relative rates of coupling and dissipation, a light-matter coupled system is either in the weak- or strong-coupling regime. Here, we present a unique system where the coupling rate continuously increases with an externally applied magnetic field while the dissipation rate remains constant, allowing us to monitor a weak-to-strong coupling transition as a function of magnetic field. We observed a Rabi splitting of a terahertz magnon mode in yttrium orthoferrite above a threshold magnetic field of ∼14 T. Based on a microscopic theoretical model, we show that with increasing magnetic field the magnons transition into magnon polaritons through an exceptional point, which will open up new opportunities for in situ control of non-Hermitian systems. Copyright © 2022, The Authors. All rights reserved.

关键词： Polariton

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Spatiotemporally controlled room temperature exciton transport under dynamic pressure

arXiv

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arXiv 2021年

作者： Datta, Kanak Lyu, Zhengyang Li, Zidong Taniguchi, Takashi Watanabe, Kenji Deotare, Parag B. Department of Electrical and Computer Engineering College of Engineering University of Michigan Ann ArborMI48109 United States Applied Physics Program College of Literature Science and Arts University of Michigan Ann ArborMI48109 United States International Center for Materials Nanoarchitectonics National Institute for Materials Science 1-1 Namiki Ibaraki305-0044 Japan Research Center for Functional Materials National Institute for Materials Science 1-1 Namiki Tsukuba305-0044 Japan

Two-dimensional transition metal dichalcogenides (TMDs) provide an attractive platform for studying strain dependent exciton transport at room temperature due to large exciton binding energy and strong bandgap sensitivity to mechanical stimuli. Here, we use Rayleigh type surface acoustic wave (SAW) to demonstrate controlled and directional exciton transport under weak coupling regime at room temperature. We screen the in-plane piezoelectric field using photogenerated carriers to study transport under type-I bandgap modulation and measure a maximum exciton drift velocity of 600 m/s. Furthermore, we demonstrate precise steering of exciton flux by controlling the relative phase between the input RF excitation and exciton photogenerations. The results provide important insight into the weak coupling regime between dynamic strain wave and room temperature excitons in a 2D semiconductor system and pave way to exciting applications of excitonic devices in data communication and processing, sensing and energy conversion. Copyright © 2021, The Authors. All rights reserved.

关键词： Excitons

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Cavity-mediated superthermal phonon correlations in the ultrastrong coupling regime

arXiv

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arXiv 2024年

作者： Kim, Dasom Hou, Jin Lee, Geon Agrawal, Ayush Kim, Sunghwan Zhang, Hao Bao, Di Baydin, Andrey Wu, Wenjing Tay, Fuyang Huang, Shengxi Chia, Elbert E.M. Kim, Dai-Sik Seo, Minah Mohite, Aditya D. Hagenmüller, David Kono, Junichiro Applied Physics Graduate Program Smalley–Curl Institute Rice University HoustonTX77005 United States Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States Department of Materials Science and NanoEngineering Rice University HoustonTX77005 United States Sensor System Research Center Korea Institute of Science and Technology Seoul02792 Korea Republic of Department of Physics and Astronomy Seoul National University Seoul08826 Korea Republic of Department of Chemical and Biomolecular Engineering Rice University Houston77005 United States Ulsan44919 Korea Republic of Division of Physics and Applied Physics School of Physical and Mathematical Sciences Nanyang Technological University Singapore637371 Singapore Smalley–Curl Institute Rice University HoustonTX77005 United States Rice Advanced Materials Institute Rice University HoustonTX77005 United States KU–KIST Graduate School of Converging Science and Technology Korea University Seoul02841 Korea Republic of Université de Strasbourg CNRS Strasbourg67200 France Department of Physics and Astronomy Rice University HoustonTX77005 United States

Phonons, or vibrational quanta, are behind some of the most fundamental physical phenomena in solids, including superconductivity, Raman processes, and broken-symmetry phases. It is therefore of fundamental importance to find ways to harness phonons for controlling these phenomena and developing novel quantum technologies. However, the majority of current phonon control techniques rely on the use of intense external driving fields or strong anharmonicities, which restricts their range of applications. Here, we present a scheme for controlling the intensity fluctuations in phonon emission at room temperature based on multimode ultrastrong light–matter coupling. The multimode ultrastrong coupling regime is achieved by coupling two optical phonon modes in lead halide perovskites to an array of nanoslots, which operates as a single-mode cavity. The extremely small mode volume of the nanoslots enables unprecedented coupling strengths in a cavity phonon-polariton system. In the far-detuned, low-cavity-frequency regime, we demonstrate that the nanoslot resonator mediates an effective coupling between the phonon modes, resulting in superthermal phonon bunching in thermal equilibrium, both within the same mode and between different modes. Experimental results are in good agreement with a multimode Hopfield model. Our work paves the way for the tailoring of phonons to modify charge and energy transport in perovskite materials, with potential applications in light-collecting or emitting devices. Copyright © 2024, The Authors. All rights reserved.

关键词： Perovskite

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Non-linear optics at twist interfaces in h-BN/SiC heterostructures

arXiv

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arXiv 2023年

作者： Biswas, Abhijit Xu, Rui Alvarez, Gustavo A. Zhang, Jin Christiansen-Salameh, Joyce Puthirath, Anand B. Burns, Kory Hachtel, Jordan A. Li, Tao Iyengar, Sathvik Ajay Gray, Tia Li, Chenxi Zhang, Xiang Kannan, Harikishan Elkins, Jacob Pieshkov, Tymofii S. Vajtai, Robert Birdwell, A. Glen Neupane, Mahesh R. Garratt, Elias J. Ivanov, Tony Pate, Bradford B. Zhao, Yuji Zhu, Hanyu Tian, Zhiting Rubio, Angel Ajayan, Pulickel M. Department of Materials Science and Nanoengineering Rice University HoustonTX77005 United States Sibley School of Mechanical and Aerospace Engineering Cornell University IthacaNY14853 United States Max Planck Institute for the Structure and Dynamics of Matter Center for Free-Electron Laser Science Luruper Chaussee 149 22761 Germany Department of Materials Science & Engineering University of Virginia CharlottesvilleVA22904 United States Center for Nanophase Materials Sciences Oak Ridge National Laboratory Oak RidgeTN37831 United States Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States DEVCOM Army Research Laboratory RF Devices and Circuits AdelphiMD20783 United States Chemistry Division Naval Research Laboratory WashingtonDC20375 United States Applied Physics Graduate Program Smalley-Curl Institute Rice University HoustonTX77005 United States Flatiron Institute New YorkNY10010 United States

Understanding the emergent electronic structure in twisted atomically thin layers has led to the exciting field of twistronics. However, practical applications of such systems are challenging since the specific angular correlations between the layers must be precisely controlled and the layers have to be single crystalline with uniform atomic ordering. Here, we suggest an alternative, simple and scalable approach where nanocrystalline two-dimensional (2D) film on three-dimensional (3D) substrates yield twisted-interface-dependent properties. Ultrawidebandgap hexagonal boron nitride (h-BN) thin films are directly grown on high in-plane lattice mismatched wide-bandgap silicon carbide (4H-SiC) substrates to explore the twist-dependent structure-property correlations. Concurrently, nanocrystalline h-BN thin film shows strong nonlinear second-harmonic generation and ultra-low cross-plane thermal conductivity at room temperature, which are attributed to the twisted domain edges between van der Waals stacked nanocrystals with random in-plane orientations. First-principles calculations based on time-dependent density functional theory manifest strong even-order optical nonlinearity in twisted h-BN layers. Our work unveils that directly deposited 2D nanocrystalline thin film on 3D substrates could provide easily accessible twist-interfaces, therefore enabling a simple and scalable approach to utilize the 2D-twistronics integrated in 3D material devices for next-generation nanotechnology. © 2023, CC BY.

关键词： Harmonic generation

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Observation of current-induced switching in non-collinear antiferromagnetic IrMn3 by differential voltage measurements

arXiv

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arXiv 2021年

作者： Arpaci, Sevdenur Lopez-Dominguez, Victor Shi, Jiacheng Sánchez-Tejerina, Luis Garesci, Francesca Wang, Chulin Yan, Xueting Sangwan, Vinod K. Grayson, Matthew Hersam, Mark C. Finocchio, Giovanni Amiri, Pedram Khalili Department of Electrical and Computer Engineering Northwestern University EvanstonIL60208 United States Graduate Program in Applied Physics Northwestern University EvanstonIL60208 United States Department of Mathematical and Computer Sciences Physical Sciences and Earth Sciences University of Messina Messina98166 Italy Department of Engineering University of Messina Messina98166 Italy Department of Materials Science and Engineering Northwestern University EvanstonIL60208 United States Department of Chemistry Northwestern University EvanstonIL60208 United States

There is accelerating interest in developing memory devices using antiferromagnetic (AFM) materials, motivated by the possibility for electrically controlling AFM order via spin-orbit torques, and its read-out via magnetoresistive effects. Recent studies have shown, however, that high current densities create non-magnetic contributions to resistive switching signals in AFM/heavy metal (AFM/HM) bilayers, complicating their interpretation. Here we introduce an experimental protocol to unambiguously distinguish current-induced magnetic and nonmagnetic switching signals in AFM/HM structures, and demonstrate it in IrMn3/Pt devices. A six-terminal double-cross device is constructed, with an IrMn3 pillar placed on one cross. The differential voltage is measured between the two crosses with and without IrMn3 after each switching attempt. For a wide range of current densities, reversible switching is observed only when write currents pass through the cross with the IrMn3 pillar, eliminating any possibility of non-magnetic switching artifacts. Micromagnetic simulations support our findings, indicating a complex domain-mediated switching process. © 2021, CC BY.

关键词： Binary alloys

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Scalable Metagrating for Efficient Ultrasonic Focusing

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Physical Review Applied 2021年第6期16卷 064014-064014页

作者： Yan Kei Chiang Li Quan Yugui Peng Shahrokh Sepehrirahnama Sebastian Oberst Andrea Alù David A. Powell School of Engineering and Information Technology University of New South Wales Canberra ACT 2610 Australia Department of Electrical and Computer Engineering The University of Texas at Austin Austin Texas 78712 USA Photonics Initiative Advanced Science Research Center City University of New York New York New York 10031 USA Centre for Audio Acoustics and Vibration University of Technology Sydney Broadway NSW 2007 Australia Physics Program Graduate Center City University of New York New York New York 10016 USA

Acoustic metalenses have been pursued over the past decades due to their pivotal role in a wide variety of applications. Recent research efforts have demonstrated that, at ultrasonic regimes, acoustic levitation can be realized with standing waves, which are created by the interference between incoming and reflected focused waves. However, the conventional gradient-metasurface approach to focus ultrasonic waves is complex, leading to poor scalability. In this work, we propose a design principle for ultrasonic metalenses, based on metagratings—arrays of discrete scatters with coarser features than gradient metasurfaces. We achieve beam focusing by locally controlling the excitation of a single diffraction order with the use of metagratings, with geometry adiabatically varying over the lens aperture. We show that our metalens can effectively focus impinging ultrasonic waves to a focal point with a full width at half maximum of 0.364 of the wavelength. The focusing performance of the metalens is demonstrated experimentally, validating our proposed approach. This metagrating approach to focusing can be adopted for different operating frequencies by scaling the size of the structure, which has coarse features suitable for high-frequency designs, with potential applications ranging from biomedical science to nondestructive testing.

关键词： Acoustic measurements Acoustic metamaterials Acoustic modeling Acoustic wave phenomena Beam optics Ultrasonics Bloch-Floquet theorem Ultrasound techniques

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