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Synergistic effect of silicon availability and salinity on metal adsorption in a common estuarine diatom

Journal of environmental Sciences 2025年第2期148卷 364-374页

作者： Fengyuan Chen Jie Ma Ke Pan SZU-HKUST Joint PhD Program in Marine Environmental Science Shenzhen UniversityShenzhen 518060China Shenzhen Key Laboratory of Marine Microbiome Engineering Institute for Advanced StudyShenzhen UniversityShenzhen 518060China Department of Ocean Science The Hong Kong University of Science and TechnologyHong Kong 999077China

Increasing nitrogen and phosphorus discharge and decreasing sediment input have made silicon(Si)a limiting element for diatoms in *** in nutrient structure and salinity fluctuation can greatly affect metal uptake by estuarine ***,the combined effects of Si and salinity on metal accumulation in these diatoms have not been *** this study,we aimed to investigate how salinity and Si availability combine to influence the adsorption of metals by a widely distributed diatom Phaeodactylum *** data indicate that replete Si and low salinity in seawater can enhance cadmium and copper adsorption onto the diatom *** the single-cell level,surface potential was a dominant factor determining metal adsorption,while surface roughness also contributed to the highermetal loading capacity at lower *** a combination of noninvasive micro-test technology,atomic force microscopy,X-ray photoelectron spectroscopy,and Fourier transform infrared spectroscopy,we demonstrate that the diversity and abundance of the functional groups embedded in diatom cell walls vary with salinity and Si *** results in a change in the cell surface potential and transient metal *** study provides novel mechanisms to explain the highly variable metal adsorption capacity of a model estuarine diatom.

关键词： Diatom Metal adsorption Silicon Salinity Functional group Surface potential

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MiR-1 Is Regulated by Hydrogen Peroxide via MAPK and Limits Cell Migration and Invasion

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environmental Toxicology 2025年 2025 May 16页

作者： Pacurari, Maricica Cox, Irmanecia Farah, Ibrahim Department of Biology College of Science Engineering and Technology Jackson State University Jackson MS United States RCMI Center for Environmental Health College of Science Engineering and Technology Jackson State University Jackson MS United States Environmental Science PhD Program College of Science Engineering and Technology Jackson State University Jackson MS United States

MicroRNA-1 (miR-1) is a conserved microRNA that is highly expressed in skeletal and cardiac muscle tissues. Moreover, miR-1 regulates genes and has critical roles in cell migration and invasion. Downregulation of miR-1 has been found in many pathologies of numerous organs, including the lungs. What exactly contributes to the downregulation of miR-1 is not fully understood, and in the present study, we investigated whether ROS regulate miR-1 and its role in cell migration and invasion. A549 cells were grown and maintained in DMEM:F12 (1:1) and supplemented with 10% FBS and 1000 U of Penicillin/Streptomycin and maintained as recommended by the manufacturer (ATCC). Cell migration and invasion, IHC, Western blot, qPCR, ROS, miR-1 transfection, and qPCR were used to determine miR-1 regulation and its role in cell migration. Exogenous miR-1 decreased the formation of ROS and inhibited cell migration and invasion, whereas inhibition of miR-1 increased ROS formation and stimulated cell migration and invasion. Inhibition of miR-1 induced the formation of actin filaments contractile structures, whereas exogenous miR-1 limited the formation of these structures. Hydrogen peroxide significantly decreased miR-1 level, whereas inhibition of Nox4 had no effect on miR-1 level. Alpha amanitin did not decrease miR-1 level, whereas inhibition of NF-кB temporally decreased miR-1 level. This study demonstrates that ROS suppress miR-1 and that miR-1 is posttranscriptionally regulated via MAPK. Endogenous Nox4-dependent ROS are not involved in miR-1 regulation, whereas exogenous ROS regulates miR-1. NF-κB plays a key role in miR-1 regulation in both redox and nonredox environments. Moreover, Mir-1 limits cell migration and invasion even in the presence of ROS. TSP-1 is a major regulator of TGFβ and its expression is upregulated by ROS. Our work indicates ROS is a major regulator of miR-1 and TSP-1 and could be a potential therapeutic target to limit ROS- and non-ROS-mediated processes in l

关键词： cell migration MAPK miR-1 NF-кB Nox4 posttranscriptional ROS TSP-1

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Effects of ambient silicic acid concentration on the physiology of marine cyanobacterial Synechococcus

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Marine environmental Research 2025年 209卷 107220页

作者： Ou, Qiang Xu, Huo Zhang, Zhen Ma, Jie Pan, Ke Shenzhen Key Laboratory of Marine Microbiome Engineering Institute for Advanced Study Shenzhen University Shenzhen China SZU-HKUST Joint PhD Program in Marine Environmental Science Shenzhen University Shenzhen China Department of Ocean Science The Hong Kong University of Science and Technology Hong Kong

The marine cyanobacterium Synechococcus can accumulate significant amounts of silicon (Si) within its cells, potentially contributing to the vertical transport of biogenic Si in the ocean. This has prompted interest in understanding the uptake, subcellular distribution, and chemical forms of Si in Synechococcus. The surprisingly high intracellular Si concentration could have important impacts on Synechococcus physiology, but these effects have been relatively unexplored. In this study, we investigated the effects of external Si concentrations, [Si(OH)4], on the cell physiology of two strains of Synechococcus (CC9311 and WH7803). Increased ambient [Si(OH)4] significantly enhanced total cellular and water-soluble Si content in Synechococcus, but had little effect on their growth. However, the cell size, volume and photosynthetic performance were significantly reduced in strain WH7803, indicating some harmful effects in the cell. Increases in ambient [Si(OH)4] also altered the Derjaguin-Muller-Toporov (DMT) modulus, adhesion, surface potential and elemental composition of the Synechococcus cells. Notably, significant changes in area-specific adsorbed metals and volume-specific metal content were observed at higher [Si(OH)4] levels, suggesting Si availability in seawater could markedly impact the interactions between Synechococcus cell and environment. Overall, this study provides new insights into the physiological adaptations of marine cyanobacterium Synechococcus to varying environmental silicic acid concentrations. © 2025 Elsevier Ltd

关键词： Psychophysiology

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A multi-nutrient nanocomposite enhances UV stress tolerance and modulates nutrient accumulation in lettuce

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environmental Science: Nano 2025年

作者： Thangavelu, Raja muthuramalingam da Silva, Washington Hernandez-Viezcas, Jose A. Oyanedel-Craver, Vinka Gardea-Torresdey, Jorge L. Dimkpa, Christian O. White, Jason C. Mena, Nubia Zuverza Connecticut Agricultural Experiment Station New Haven 06511 CT United States Department of Chemistry and Biochemistry The University of Texas at El Paso 500 West University Avenue El Paso 79968 TX United States Department of Civil and Environmental Engineering University of Rhode Island Kingston RI United States Environmental Science and Engineering PhD Program University of Texas at El Paso El Paso United States

This study introduces a novel multielement (Zn-Mg-Mn-Fe) nanocomposite that serves both as a UV-protective agent and a nutrient delivery system for Lactuca sativa (lettuce). Plants were grown indoors in a potting soil-like mix, under artificial lighting (from light emitting diodes, LEDs) or under LED + UV radiation to simulate excessive sunlight exposure (light stress). Lettuce was treated with foliar applications of the nanocomposite at 100 mg L⁻¹, 200 mg L⁻¹, and 300 mg L⁻¹, with 1 mL applied per plant during the fifth week of growth (a total of 0.1, 0.2 or 0.3 mg of the composite respectively per plant). Plants were exposed to UV radiation (360-400 nm) for 10 hours daily over two weeks. The 300 mg L⁻¹ treatment significantly enhanced photosynthetic efficiency and plant growth, increasing chlorophyll content (66.7% ± 3.5), leaf area (45% ± 2.1), and dry biomass (43.68% ± 1.8) compared to untreated and ionic controls. It also mitigated UV-induced stress, reducing UV-induced damage scores by 73% compared to controls and lowering stress markers, with flavonoid production reduced to 30.5% ± 2.3 of control levels and SOD activity reduced to 25.8% ± 1.8 of control levels. The composite's-controlled nutrient release mechanism facilitated rapid Mg uptake (220 mg kg⁻¹ dry weight in leaves within 4 days) and sustained delivery of Zn, Mn, and Fe over a 7-10-day period. Long-term nutrient uptake analysis showed increases in Mn (55.3% ± 3.2), Mg (47.8% ± 2.7), and Fe (62.5% ± 4.1). Enhanced P (28.5% ± 2.2) and K (35.7% ± 3.1) accumulation further boosted the nutritional quality of edible tissues. Additionally, the nanocomposite demonstrated the unique ability to convert harmful UV radiation into visible light, providing dual benefits of UV protection and enhanced photosynthetic activity. These findings highlight the potential of this multi-functional nanocomposite as a sustainable solution to improve crop resilience, optim

关键词： Lettuce

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CIWARS: A Web Server for Antibiotic Resistance Surveillance Using Longitudinal Metagenomic Data

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Journal of Molecular Biology 2025年

作者： Emon, Muhit Islam Cheung, Yat Fei Stoll, James Rumi, Monjura Afrin Brown, Connor Choi, Joung Min Moumi, Nazifa Ahmed Ahmed, Shafayat Song, Haoqiu Sein, Justin Yao, Shunyu Khan, Ahmad Gupta, Suraj Kulkarni, Rutwik Butt, Ali Vikesland, Peter Pruden, Amy Zhang, Liqing Department of Computer Science Virginia Tech Blacksburg 24060 VA United States Fralin Life Science Institute Virginia Tech Blacksburg 24060 VA United States Department of Civil and Environmental Engineering Virginia Tech Blacksburg 24060 VA United States The Interdisciplinary PhD Program in Genetics Bioinformatics and Computational Biology Virginia Tech Blacksburg 24060 VA United States

The rise of antibiotic resistance (AR) poses a substantial threat to human and animal health, food security, and economic stability. Wastewater-based surveillance (WBS) has emerged as a powerful strategy for population-level AR monitoring, providing valuable data to guide public health and policy decisions. Metagenomic sequencing is especially promising, as it can yield comprehensive profiles of antibiotic resistance genes (ARGs) and other genes relevant to AR in a single run. However, online analytical platforms to facilitate analysis of longitudinal metagenomic data are lacking. To address this, we introduce CyberInfrastructure for Waterborne Antibiotic Resistance Surveillance (CIWARS), a web server configured for characterizing key AR trends from longitudinal metagenomic WBS data. CIWARS offers comprehensive profiling of ARGs and taxonomic profiling of pathogen-associated bacterial taxonomic groups, identifies potential associations of ARGs with mobile genetic elements (MGEs) and pathogen-containing taxa, and assesses resistome risk based on the co-occurrence of ARGs, MGEs, and pathogen-like sequences. Additionally, it detects anomalous AR indicators over time, aiding in identifying potential events of concern, such as the emergence of resistant strains or outbreaks. Through interactive temporal data visualization, CIWARS enables AR monitoring and can serve as a tool to inform effective and timely interventions to mitigate the spread and transmission of AR. Here, CIWARS is demonstrated using longitudinal metagenomic data from a wastewater treatment plant (WWTP) influent and effluent, but it can be extended to any environment. CIWARS provides a valuable tool to support global efforts to combat the evolution and spread of AR, while also guiding agricultural and public health efforts aimed at optimizing antibiotic use. The web server is freely available at https://***/. © 2025 Elsevier Ltd

关键词： anomaly detection antibiotic resistance (AR) AR indicator profiling longitudinal metagenomics wastewater-based surveillance

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Genomic and transcriptomic dissection of Theionarchaea in marine ecosystem

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Science China(Life Sciences) 2022年第6期65卷 1222-1234页

作者： Mingwei Cai Changhai Duan Xinxu Zhang Jie Pan Yang Liu Cuijing Zhang Meng Li Archaeal Biology Center Shenzhen Key Laboratory of Marine Microbiome EngineeringInstitute for Advanced StudyShenzhen UniversityShenzhen 518060China SZU-HKUST Joint PhD Program in Marine Environmental Science Shenzhen UniversityShenzhen 518060China

Theionarchaea is a recently described archaeal class within the *** it is widely distributed in sediment ecosystems,little is known about its metabolic potential and ecological ***,we used metagenomics and metatranscriptomics to characterize 12 theionarchaeal metagenome-assembled genomes,which were further divided into two subgroups,from coastal mangrove sediments of China and seawater columns of the Yap *** analysis revealed that apart from the canonical sulfhydrogenase,Theionarchaea harbor genes encoding heliorhodopsin,group 4[NiFe]-hydrogenase,and flagellin,in which genes for heliorhodopsin and group 4[NiFe]-hydrogenase were transcribed in mangrove ***,the theionarchaeal substrate spectrum may be broader than previously reported as revealed by metagenomics and metatranscriptomics,and the potential carbon substrates include detrital proteins,hemicellulose,ethanol,and CO_(2).The genes for organic substrate metabolism(mainly detrital protein and amino acid metabolism genes)have relatively higher transcripts in the top sediment layers in mangrove *** addition,co-occurrence analysis suggested that the degradation of these organic compounds by Theionarchaea might be processed in syntrophy with fermenters(e.g.,Chloroflexi)and ***,these observations expand the current knowledge of the metabolic potential of Theionarchaea,and shed light on the metabolic strategies and roles of these archaea in the marine ecosystems.

关键词： Theionarchaea metagenome metatranscriptome metabolic potentials ecological roles

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Estimation challenges of lateral pressures in retaining structures using granular recycled tire aggregates as backfill

Estimation challenges of lateral pressures in retaining stru...

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2014 Congress on Geo-Characterization and Modeling for Sustainability, Geo-Congress 2014

作者： Garcia-Theran, Mauricio Pando, Miguel A. Celis, Hebenly Abdoun, Tarek Infrastructure and Environmental Systems PhD Program University of North Carolina at Charlotte 9201 University City Blvd Charlotte NC 28223 United States School of Civil Engineering Universidad Industrial de Santander Bucaramanga Colombia Department of Civil and Environmental Engineering Rensselaer Polytechnic Institute 110 Eighth Street Troy NY United States

ISBN: (纸本)9780784413272

The civil engineering community is a leader in national and international efforts toward sustainability, recycling, and reuse of materials. For example, asphalt is the most recycled material on earth, which is approximately 13 times the newsprint recycling and 27 times the glass bottles recycling. Recycled materials that have been used as borrow materials for embankment construction and retaining wall backfills include recycled asphalt, recycled concrete, tire-derived aggregates (TDA), blast furnace slag, steel slag, coal bottom ash/ boiler slag, flue gas desulfurization scrubber, cullet glass, and roofing shingles. Some of these recycled materials offer potential environmental, technical, and economical benefits for retaining-wall applications. For example, when compared with natural soils, many may offer the advantage of reduced lateral earth pressures and foundation settlement due to smaller unit weight and potentially higher drainage capacity. However, implicit in some of these options is the applicability of conventional soil mechanical principles in the design and technical assessment. In this paper we present experimental data from laboratory and model tests (centrifuge and model retaining walls) that highlight the challenges involved when trying to predict lateral pressures induced by a recycled wall backfill composed of tire derived aggregate. A key difference of this type of granular material is related to the nature of their particles, which are deformable and can exhibit viscous behavior. The experimental results are compared with classical lateral earth theories for active, passive, and at-rest conditions. The manuscript also includes an assessment of the time dependency of the at-rest pressures induced by TDA backfill. © 2014 American Society of Civil Engineers.

关键词： Glass

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Clinical Biomarkers to Evaluate Next Generation Inhaled Tobacco Products’ Effect in the Oral Cavity: a Narrative Review

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Current Oral Health Reports 2024年第1期11卷 30-39页

作者： Sarles, S. Emma Hensel, Edward C. Rahman, Irfan Robinson, Risa J. Biomedical and Chemical Engineering PhD Program Rochester Institute of Technology Rochester NY United States Department of Mechanical Engineering Respiratory Technologies Lab Rochester Institute of Technology Rochester NY United States Department of Environmental Medicine Rahman Lab University of Rochester Medical Center Rochester NY United States

Purpose of Review: Biomarkers in the oral cavity of users of next generation tobacco products, such as electronic cigarettes (EC), provide data about effects on oral and systemic health and help predict long-term health effects, such as cardiovascular, respiratory, and periodontal disease. Despite oral cavity health provides, translation of findings to regulatory outcomes around EC is lacking. A review of the current state of the art in use of clinical biomarkers of the oral cavity was conducted. This identified inconsistencies and gaps in tobacco regulatory science to address how to improve clinical studies for screening tobacco products and studying disease. Recent Findings: The review identified that saliva and buccal biopsies provide dependable biomarkers of oral and systemic health when several parameters of health are standardized and considered. Inflammatory cytokines in oral tissue and biofluids of EC users are conflicting due to differences in sample collection and analysis techniques. Salivary C-reactive protein levels provide information about systemic inflammation and risk of cardiovascular disease, but analysis of this biomarker in the oral cavity does not appear in the current literature. The oral microbiome plays a significant role in human health and may be a useful tool to study systemic effects of tobacco products non-invasively, yet inconsistencies in reporting metrics make studies difficult to compare or translate into tangible outcomes. Effects of tobacco product use on hard dental tissue are not widely investigated despite correlations observed between e-cigarette use and broken teeth. Summary: This review provides a comprehensive update on clinical biomarkers in systemic and oral diseases associated with emerging nicotine products. © 2023, The Author(s), under exclusive licence to Springer Nature Switzerland AG.

关键词： Biomarkers Electronic cigarette Oral health Tobacco regulatory science Vaping

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Sustainability appraisal of used vehicle trade policy options in sub-Saharan African countries

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environmentalist 2009年第4期29卷 360-370页

作者： Kehbila, Anderson Gwanyebit Ertel, Jürgen Brent, Alan Colin Environmental and Resource Management PhD Program Department of Industrial Sustainability Brandenburg University of Technology Cottbus Germany Department of Industrial Sustainability Brandenburg University of Technology Cottbus Germany Chair of Life Cycle Engineering Graduate School of Technology Management University of Pretoria Pretoria South Africa

This paper examines the structure of contemporary vehicle mitigation commitments after lead gasoline phase out in sub-Sahara Africa. First, this paper reviews some of the leading domestic trade policy proposals (emission reduction actions) with regard to their expected technology impacts. Next, it assesses the options based on establishing benchmarks for measuring policy performance in curbing vehicle emissions simultaneously with core sustainable development priorities. Assessing these options identifies the key variables in designing mitigation commitments, offers criteria for evaluating different approaches and discusses the implications of the leading alternatives. This paper argues that a more pronounced dilemma of synergies exists between vehicle emissions reduction and core development concerns as the major players target emissions too narrowly. Finally, this paper sheds more light on strategies that could be employed simultaneously at the regional and domestic levels to enhance sustainable development as trade continues to grow and evolve. © Springer Science+Business Media, LLC 2008.

关键词： Clean air initiative Criteria analysis Sub-Sahara Africa Sustainability appraisal Trade policy Vehicle emissions

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Direct detection of adenovirus in environmental waste waters by portable optical fiber sensor platform

Direct detection of adenovirus in environmental waste waters...

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12th IEEE SENSORS 2013 Conference

作者： Yildirim, Nimet Li, Dan Long, Feng Gu, April Z. Bioengineering PhD Program Northeastern University Boston United States Department of Civil and Environmental Engineering Northeastern University Boston United States State Key Joint Laboratory of Environment Simulation and Pollution Control Environmental Science and Engineering Tsinghua University Beijing China Department of Environment Science and Engineering Tsinghua University Beijing China 360 Huntington Ave. Boston MA 02115 United States

ISBN: (纸本)9781467346405

Reusable and portable evanescent wave biosensor for rapid, sensitive and highly selective direct detection of adenoviruses was developed. Here, specific antibody for the hexon protein of the virus was used as a recognition element. Linear detection range was determined from 100PFU/ml to 2000PFU/ml. This direct detection system can be regenerated successfully with over 5 times without significant deterioration of the sensor performance. The developed biosensor system has high specificity towards adenovirus, and it was applied to environmental waste water samples for the detection of adenovirus with 95 to 117% recovery and 1.1 to 8.1% cv values (n=2). © 2013 IEEE.

关键词： Optical fibers

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