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SSRN 2024年

作者： Saad Menezes, Maria Clara Hoffman, Alexander F. Tan, Amelia L.M. Nalbandyan, Mariné Omenn, Gilbert S. Mazzotti, Diego R. Hernández-Arango, Alejandro Visweswaran, Shyam Venkatesh, Shruthi Mandl, Kenneth D. Bourgeois, Florence T. Lee, James W.K. Makmur, Andrew Hanauer, David A. Semanik, Michael G. Kerivan, Lauren T. Hill, Terra Forero, Julian Restrepo Castro, Carlos Andrés C.R. Vigna, Matteo Ceriana, Piero Abu-El-rub, Noor Avillach, Paul Bellazzi, Riccardo Callaci, Thomas Gutiérrez-Sacristán, Alba Malovini, Alberto Mathew, Jomol P. Morris, Michele Murthy, Venkatesh Parimbelli, Enea Patel, Lav P. Sáez, Carlos Samayamuthu, Malarkodi Jebathilagam Thompson, Jeffrey A. Tibollo, Valentina Xia, Zongqi Kohane, Isaac S. Harvard Medical School Department of Biomedical Informatics 10 Shattuck Street BostonMA02115 United States School of Medicine and Public Health University of Wisconsin-Madison Office of Informatics and Information Technology 750 Highland Ave MadisonWI53705 United States University of Michigan Department of Computational Medicine & Bioinformatics Internal Medicine Human Genetics Environmental Health 100 Washtenaw Avenue Ann ArborMI48109 United States University of Kansas Medical Center Division of Medical Informatics Division of Pulmonary Critical Care and Sleep Medicine Department of Internal Medicine 3901 Rainbow Blvd Kansas CityKS66160 United States University of Antioquia Hospital Alma Máter de Antioquia Department of Internal Medicine Calle 64 N°51 D - 154 Medellín Colombia University of Pittsburgh Department of Biomedical Informatics 5607 Baum Blvd PittsburghPA15206 United States University of Pittsburgh Department of Neurology 3501 5th Avenue PittsburghPA15206 United States Boston Children's Hospital Computational Health Informatics Program 300 Longwood Avenue BostonMA02115 United States Boston Children's Hospital Department of Pediatrics 300 Longwood Avenue BostonMA02115 United States National University Health System Department of Surgery 1E Kent Ridge Rd Singapore119228 Singapore National University Health System Department of Diagnostic Imaging 1E Kent Ridge Rd Singapore119228 Singapore University of Michigan Department of Learning Health Sciences NCRC 100 2800 Plymouth Road Ann ArborMI48109 United States University of Kansas Medical Center Department of Surgery 3901 Rainbow Blvd Kansas CityKS66160 United States Istituti Clinici Scientifici Maugeri IRCCS Respiratory rehabilitation unit Via Maugeri 10 Pavia27100 Italy University of Kansas Medical Center 3901 Rainbow Blvd Kansas CityKS66160 United States University of Pavia Department of Electrical Computer and Biomedical Engineering via Ferrata 5 Pavia2710

Background: Physicians invest hours creating patient notes, which are rich in information but difficult for computers to analyze due to their unstructured format. GPT-4 reshaped our ability to process text, yet it is unknown how well this model can handle medical notes. This project aims to compare GPT-4’s ability to annotate medical notes against experienced physicians across three different languages at multiple institutions and countries. Methods: This study included eight sites from four countries - the United States, Colombia, Singapore, and Italy. Each site contributed seven de-identified notes (admission, progress, or consult) from hospitalized patients. GPT-4 assessed each note by answering 14 questions, including demographic information, clinical judgments, data quality, and patients’ eligibility for a hypothetical study enrollment. For validation, two physicians from each site independently evaluated GPT-4's responses. Findings: Overall, 56 medical notes, written in English, Italian, and Spanish, were analyzed. A total of 784 responses from GPT-4 were generated. Both physicians agreed with GPT-4’s response 79% of the time (622/784, 95%CI 76-82%). Only one of the two physicians agreed with GPT-4’s response 10% of the time (82/784, 95%CI 8-13%). Neither physician agreed with GPT-4’s response 10% of the time (80/784, 95%CI 8-13%). Both physicians agreed with GPT-4 more often in notes written in Spanish and Italian than in English, with agreement rates of 88% (86/98, 95%CI 79-93%), 84% (82/98, 95%CI 75-90%), and 77% (454/588, 95%CI 74-80%), respectively. Hallucinations were rare (10/784, 95%CI 0-2%). GPT-4 correctly selected patients for a hypothetical study enrollment based on three criteria 90% of the time (95%CI 81-98%). Interpretation: The findings indicate that GPT-4 annotations demonstrated a high agreement rate with physicians across all languages. We also demonstrate GPT-4's potential to assist in patient selection for studies. Funding: None. Declarati

关键词： Medical computing

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Retraction notice to ‘Applications of engineered biochar in remediation of heavy metal(loid)s pollution from wastewater: Current perspectives toward sustainable development goals’ [Sci. Total Environ., 926 (2024) 171859] (Science of the Total Environment (2024) 926, (S0048969724020023), (10.1016/***.2024.171859))

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Science of the Total Environment 2025年 976卷 179291页

作者： Tran, Thien-Khanh Huynh, Loan Nguyen, Hoang-Lam Nguyen, Minh-Ky Lin, Chitsan Hoang, Tuan-Dung Hung, Nguyen Tri Q. Nguyen, X. Hoan Chang, S. Woong Nguyen, D. Duc Advanced Applied Sciences Research Group Dong Nai Technology University Bien Hoa City76100 Viet Nam Faculty of Technology Dong Nai Technology University Bien Hoa City76100 Viet Nam Department of Civil Engineering McGill University Montreal Canada Faculty of Environment and Natural Resources Nong Lam University Hamlet 6 Linh Trung Ward Thu Duc City Ho Chi Minh City700000 Viet Nam Ph.D. Program in Maritime Science and Technology National Kaohsiung University of Science and Technology Kaohsiung81157 Taiwan Department of Marine Environmental Engineering National Kaohsiung University of Science and Technology Kaohsiung81157 Taiwan School of Chemistry and Life Science Hanoi University of Science and Technology No. 1 Dai Co Viet Hai Ba Trung Hanoi100000 Viet Nam Vietnam National University Hanoi - School of Interdisciplinary Sciences and Arts 144 Xuan Thuy Street Cau Giay District Hanoi100000 Viet Nam Ho Chi Minh City University of Industry and Trade Ho Chi Minh City Viet Nam Department of Civil & Energy System Engineering Kyonggi University Suwon16227 Korea Republic of Institute of Applied Technology and Sustainable Development Nguyen Tat Thanh University Ho Chi Minh City700000 Viet Nam

This article has been retracted: please see Elsevier Policy on Article Withdrawal (https://***/about/policies/article-withdrawal). This article has been retracted at the request of the Authors. The corresponding author approached the journal to make it aware that significant portions of the text of the STOTEN article had already been included in the following publication involving several members of the same authorship group: Minh-Ky Nguyen, Chitsan Lin, Nguyen Tri Quang Hung, Hoang-Lam Nguyen, Hong-Giang Hoang, Huu-Tuan Tran, Mohammed Hadi, Chapter 8 - Biochar and engineering applications in remediation of heavy metal pollutants from wastewater toward sustainable development, Editor(s): Xuan-Thanh Bui, Ashok Pandey, Thanh-Tin Nguyen, Shu-Yuan Pan, Low Cost Water and Wastewater Treatment systems: Conventional and Recent Advances, Elsevier, 2025, Pages 195-233, ISBN 9780443236624, https://***/10.1016/B978-0-443-23662-4.00016-0. The authors realise that redundant publications overweigh the relative importance of published findings, and therefore requested the retraction of the STOTEN article. The authors also apologies for any inconvenience caused. © 2025 Elsevier B.V.

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DeePMD-kit v2: A software package for Deep Potential models

arXiv

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arXiv 2023年

作者： Zeng, Jinzhe Zhang, Duo Lu, Denghui Mo, Pinghui Li, Zeyu Chen, Yixiao Rynik, Marián Huang, Li'ang Li, Ziyao Shi, Shaochen Wang, Yingze Ye, Haotian Tuo, Ping Yang, Jiabin Ding, Ye Li, Yifan Tisi, Davide Zeng, Qiyu Bao, Han Xia, Yu Huang, Jiameng Muraoka, Koki Wang, Yibo Chang, Junhan Yuan, Fengbo Bore, Sigbjørn Løland Cai, Chun Lin, Yinnian Wang, Bo Xu, Jiayan Zhu, Jia-Xin Luo, Chenxing Zhang, Yuzhi Goodall, Rhys E.A. Liang, Wenshuo Singh, Anurag Kumar Yao, Sikai Zhang, Jingchao Wentzcovitch, Renata Han, Jiequn Liu, Jie Jia, Weile York, Darrin M. Weinan, E. Car, Roberto Zhang, Linfeng Wang, Han Laboratory for Biomolecular Simulation Research Institute for Quantitative Biomedicine Department of Chemistry and Chemical Biology Rutgers University PiscatawayNJ08854 United States AI for Science Institute Beijing100080 China DP Technology Beijing100080 China Academy for Advanced Interdisciplinary Studies Peking University Beijing100871 China HEDPS CAPT College of Engineering Peking University Beijing100871 China College of Electrical and Information Engineering Hunan University Changsha China Yuanpei College Peking University Beijing100871 China Program in Applied and Computational Mathematics Princeton University PrincetonNJ08540 United States Department of Experimental Physics Comenius University Mlynská Dolina F2 Bratislava842 48 Slovakia Center for Quantum Information Institute for Interdisciplinary Information Sciences Tsinghua University Beijing100084 China Center for Data Science Peking University Beijing100871 China ByteDance Research Zhonghang Plaza No. 43 North 3rd Ring West Road Haidian District Beijing China College of Chemistry and Molecular Engineering Peking University Beijing100871 China Baidu Inc. Beijing China Key Laboratory of Structural Biology of Zhejiang Province School of Life Sciences Westlake University Zhejiang Hangzhou China Westlake AI Therapeutics Lab Westlake Laboratory of Life Sciences and Biomedicine Zhejiang Hangzhou China Department of Chemistry Princeton University PrincetonNJ08544 United States SISSA Scuola Internazionale Superiore di Studi Avanzati Trieste34136 Italy Laboratory of Computational Science and Modeling Institute of Materials École Polytechnique Fédérale de Lausanne Lausanne1015 Switzerland Department of Physics National University of Defense Technology Hunan Changsha410073 China State Key Lab of Processors Institute of Computing Technology Chinese Academy of Sciences Beijing China University of Chinese Academy of Sciences Beijing China School of Electronics Engineerin

DeePMD-kit is a powerful open-source software package that facilitates molecular dynamics simulations using machine learning potentials (MLP) known as Deep Potential (DP) models. This package, which was released in 2017, has been widely used in the fields of physics, chemistry, biology, and material science for studying atomistic systems. The current version of DeePMD-kit offers numerous advanced features such as DeepPot-SE, attention-based and hybrid descriptors, the ability to fit tensile properties, type embedding, model deviation, Deep Potential - Range Correction (DPRc), Deep Potential Long Range (DPLR), GPU support for customized operators, model compression, non-von Neumann molecular dynamics (NVNMD), and improved usability, including documentation, compiled binary packages, graphical user interfaces (GUI), and application programming interfaces (API). This article presents an overview of the current major version of the DeePMD-kit package, highlighting its features and technical details. Additionally, the article benchmarks the accuracy and efficiency of different models and discusses ongoing developments. © 2023, CC BY-NC-ND.

关键词： Molecular dynamics

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The 2021 report of the Lancet Countdown on health and climate change: code red for a healthy future

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The Lancet 2021年第10311期398卷 1619-1662页

作者： Romanello, Marina McGushin, Alice Di Napoli, Claudia Drummond, Paul Hughes, Nick Jamart, Louis Kennard, Harry Lampard, Pete Solano Rodriguez, Baltazar Arnell, Nigel Ayeb-Karlsson, Sonja Belesova, Kristine Cai, Wenjia Campbell-Lendrum, Diarmid Capstick, Stuart Chambers, Jonathan Chu, Lingzhi Ciampi, Luisa Dalin, Carole Dasandi, Niheer Dasgupta, Shouro Davies, Michael Dominguez-Salas, Paula Dubrow, Robert Ebi, Kristie L Eckelman, Matthew Ekins, Paul Escobar, Luis E Georgeson, Lucien Grace, Delia Graham, Hilary Gunther, Samuel H Hartinger, Stella He, Kehan Heaviside, Clare Hess, Jeremy Hsu, Shih-Che Jankin, Slava Jimenez, Marcia P Kelman, Ilan Kiesewetter, Gregor Kinney, Patrick L Kjellstrom, Tord Kniveton, Dominic Lee, Jason K W Lemke, Bruno Liu, Yang Liu, Zhao Lott, Melissa Lowe, Rachel Martinez-Urtaza, Jaime Maslin, Mark McAllister, Lucy McMichael, Celia Mi, Zhifu Milner, James Minor, Kelton Mohajeri, Nahid Moradi-Lakeh, Maziar Morrissey, Karyn Munzert, Simon Murray, Kris A Neville, Tara Nilsson, Maria Obradovich, Nick Sewe, Maquins Odhiambo Oreszczyn, Tadj Otto, Matthias Owfi, Fereidoon Pearman, Olivia Pencheon, David Rabbaniha, Mahnaz Robinson, Elizabeth Rocklöv, Joacim Salas, Renee N Semenza, Jan C Sherman, Jodi Shi, Liuhua Springmann, Marco Tabatabaei, Meisam Taylor, Jonathon Trinanes, Joaquin Shumake-Guillemot, Joy Vu, Bryan Wagner, Fabian Wilkinson, Paul Winning, Matthew Yglesias, Marisol Zhang, Shihui Gong, Peng Montgomery, Hugh Costello, Anthony Hamilton, Ian Institute for Global Health University College London London UK United Kingdom Institute for Sustainable Resources University College London London UK United Kingdom UCL Energy Institute University College London London UK United Kingdom Institute for Environmental Design and Engineering University College London London UK United Kingdom Department of Geography University College London London UK United Kingdom The Bartlett School of Sustainable Construction University College London London UK United Kingdom Centre for Human Health and Performance University College London London UK United Kingdom School of Agriculture Policy and Development University of Reading Reading United Kingdom Department of Meteorology University of Reading Reading United Kingdom The Walker Institute University of Reading Reading United Kingdom Department of Health Sciences University of York York United Kingdom Institute for Environment and Human Security United Nations University Bonn Germany Centre on Climate Change and Planetary Health London School of Hygiene & Tropical Medicine London UK United Kingdom Centre for Mathematical Modelling of Infectious Diseases London School of Hygiene & Tropical Medicine London UK United Kingdom Department of Public Health Environments and Society London School of Hygiene & Tropical Medicine London UK United Kingdom Department of Earth System Science Tsinghua University Beijing China Department of Environment Climate Change and Health World Health Organization Geneva Switzerland Institute for Environmental Sciences World Health Organization Geneva Switzerland Centre for Climate Change and Social Transformations School of Psychology Cardiff University Cardiff United Kingdom Yale Center on Climate Change and Health Yale University New Haven CT United States School of Government University of Birmingham Birmingham United Kingdom Economic analysis of Climate Impacts and Policy Centro Euro-Mediterraneo sui Cambiamenti Climatic

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Yet Another Algorithm for the Computation of Polyhedral Positive Invariant Sets

Yet Another Algorithm for the Computation of Polyhedral Posi...

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IEEE Conference on Control Technology and Applications

作者： Daniel Y. Rubin Hoai-Nam Nguyen Per-Olof Gutman Autonomous Systems Program Israel Institute of Technology Haifa Israel Control Signal and System Department IFP Energies Nouvelles Lyon France Faculty of Civil and Environmental Engineering Israel Institute of Technology Haifa Israel

We present a new algorithm for the computation of polyhedral positive invariant sets. A set given by its half-spaces is used to yield an optimized positive invariant set w.r.t. a given autonomous system. The algorithm requires the solution of a single semi-definite program followed by a linear program. Extensions to the plant uncertain case, and to a symmetric set case are presented. Two numerical examples demonstrate the algorithm usage and capabilities.

关键词： Yet Another Algorithm Computation Polyhedral Positive Invariant Sets

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Publisher Correction: Firn on ice sheets

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Nature Reviews Earth & Environment 2024年 330页

作者： Charles Amory Christo Buizert Sammie Buzzard Elizabeth Case Nicole Clerx Riley Culberg Rajashree Tri Datta Devon Dunmire Jan T. M. Lenaerts Megan Thompson-Munson Nander Wever Rahul Dey Reinhard Drews Falk M. Oraschewski Clare Eayrs Nicolaj Hansen Sebastian B. Simonsen Angelika Humbert Athul Kaitheri Kaitlin Keegan Ian McDowell Peter Kuipers Munneke Stef Lhermitte Sophie de Roda Husman Bert Wouters Doug Mair Jessica Mejia Colin R. Meyer Elizabeth Morris Dorothea Moser Elizabeth R. Thomas Emma Pearce Nicole-Jeanne Schlegel Timm Schultz C. Max Stevens Institut des Géosciences de l’Environnement University Grenoble Alpes CNRS Grenoble France College of Earth Ocean and Atmospheric Sciences Oregon State University Corvallis OR USA School of Earth and Environmental Sciences Cardiff University Cardiff UK Department of Geography and Environmental Sciences Northumbria University Newcastle upon Tyne UK Department of Earth and Environmental Sciences Columbia University NY USA Department of Geosciences Université de Fribourg Fribourg Switzerland Department of Earth and Atmospheric Sciences Cornell University Ithaca NY USA Department of Atmospheric and Oceanic Sciences University of Colorado Boulder Boulder CO USA Cooperative Institute for Research in Environmental Sciences (CIRES) University of Colorado Boulder Boulder CO USA WSL Institute for Snow and Avalanche Research SLF Davos Switzerland National Centre for Polar and Ocean Research (NCPOR) Ministry of Earth Sciences Vasco da Gama Goa India Department of Geosciences University of Tübingen Tübingen Germany Center for Global Sea Level Change New York University Abu Dhabi Abu Dhabi UAE Department of Glacial Environment Research Korea Polar Research Institute Incheon Republic of Korea Geodesy and Earth Observation DTU Space Technical University of Denmark Kongens Lyngby Denmark Danish Meteorological Institute Copenhagen Denmark Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany Faculty of Geosciences University of Bremen Bremen Germany Observatoire de la Côte d’Azur Université Côte d’Azur CNRS Valbonne France Department of Geological Sciences and Engineering University of Nevada Reno USA Graduate Program of Hydrologic Sciences University of Nevada Reno NV USA Institute for Marine and Atmospheric Research (IMAU) Utrecht University Utrecht The Netherlands Department of Earth and Environmental Sciences KU Leuven Leuven Belgium Department of Geoscience and Remote Sensing Delft University of Technology (TUDel

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Nitrogen and phosphorus constrain the CO2 fertilization of global plant biomass (vol 21, pg 561, 2020)

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NATURE CLIMATE CHANGE 2020年第7期10卷 696-697页

作者： Terrer, Cesar Jackson, Robert B. Prentice, I. Colin Keenan, Trevor F. Kaiser, Christina Vicca, Sara Fisher, Joshua B. Reich, Peter B. Stocker, Benjamin D. Hungate, Bruce A. Penuelas, Josep McCallum, Ian Soudzilovskaia, Nadejda A. Cernusak, Lucas A. Talhelm, Alan F. Van Sundert, Kevin Piao, Shilong Newton, Paul C. D. Hovenden, Mark J. Blumenthal, Dana M. Liu, Yi Y. Mueller, Christoph Winter, Klaus Field, Christopher B. Viechtbauer, Wolfgang Van Lissa, Caspar J. Hoosbeek, Marcel R. Watanabe, Makoto Koike, Takayoshi Leshyk, Victor O. Polley, H. Wayne Franklin, Oskar Department of Earth System Science Stanford University Stanford USA Institut de Ciència i Tecnologia Ambientals Universitat Autònoma de Barcelona Barcelona Spain Ecosystems Services and Management Program International Institute for Applied Systems Analysis Laxenburg Austria Woods Institute for the Environment and Precourt Institute for Energy Stanford University Stanford USA AXA Chair Programme in Biosphere and Climate Impacts Department of Life Sciences Imperial College London Silwood Park Campus Ascot UK Department of Biological Sciences Macquarie University North Ryde Australia Department of Earth System Science Tsinghua University Beijing China Department of Environmental Science Policy and Management UC Berkeley Berkeley USA Climate and Ecosystem Sciences Division Lawrence Berkeley National Laboratory Berkeley USA Department of Microbiology and Ecosystem Science Division of Terrestrial Ecosystem Research Faculty of Life Sciences University of Vienna Vienna Austria Evolution and Ecology Program International Institute for Applied Systems Analysis Laxenburg Austria Centre of Excellence PLECO (Plants and Ecosystems) Biology Department University of Antwerp Wilrijk Belgium Jet Propulsion Laboratory California Institute of Technology Pasadena USA Joint Institute for Regional Earth System Science and Engineering University of California at Los Angeles Los Angeles USA Department of Forest Resources University of Minnesota St. Paul USA Hawkesbury Institute for the Environment Western Sydney University Penrith Australia CREAF Cerdanyola del Vallès Spain Center for Ecosystem Science and Society Northern Arizona University Flagstaff USA Department of Biological Sciences Northern Arizona University Flagstaff USA CSIC Global Ecology Unit CREAF-CEAB-UAB Bellaterra Spain Environmental Biology Department Institute of Environmental Sciences Leiden University Leiden the Netherlands College of Marine and Environmental Sciences James Cook University Cairns

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Improvements on Interpolation Techniques based on Linear programming for Constrained Control

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IFAC-PapersOnLine 2017年第1期50卷 1403-1408页

作者： Rubin D. Mercader P. Nguyen H.-N. Gutman P.-O. Baños A. Autonomous Systems Program Technion – Israel Institute of Technology Haifa Israel Department of Computer and System Engineering University of Murcia Murcia Spain Control Signal and System Department IFP Energies Nouvelles Lyon France Faculty of Civil and Environmental Engineering Technion – Israel Institute of Technology Haifa Israel

We present some improvements on interpolation based control (IC) for linear discrete-time systems with polyhedral constraints on the control and the states variables. The plant may be uncertain, time-varying, and subject to bounded disturbances. Roughly speaking, IC approach is based on the interpolation between an inner and an outer controller. The extension presented here is twofold. On the one hand, the IC approach is extended to deal with higher order inner controllers, making it e.g. possible to incorporate integral action in a vicinity of the origin. On the other hand, this paper presents a modification that better exploits the control signal range. As with previous IC strategies, the presented method demands relatively low online computational resources, and is applicable also to uncertain plants. The benefits of the improved scheme are illustrated in some examples. © 2017

关键词： Constrained control Linear programing Model predictive optimization-based control Robust control Time-varying systems

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The Ni isotopic composition of Ryugu reveals a common accretion region for carbonaceous chondrites

arXiv

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arXiv 2024年

作者： Spitzer, Fridolin Kleine, Thorsten Burkhardt, Christoph Hopp, Timo Yokoyama, Tetsuya Abe, Yoshinari Aléon, Jérôme OD. Alexander, Conel M. Amari, Sachiko Amelin, Yuri Bajo, Ken-Ichi Bizzarro, Martin Bouvier, Audrey Carlson, Richard W. Chaussidon, Marc Choi, Byeon-Gak Dauphas, Nicolas Davis, Andrew M. Rocco, Tommaso Di Fujiya, Wataru Fukai, Ryota Gautam, Ikshu Haba, Makiko K. Hibiya, Yuki Hidaka, Hiroshi Homma, Hisashi Hoppe, Peter Huss, Gary R. Ichida, Kiyohiro Iizuka, Tsuyoshi Ireland, Trevor R. Ishikawa, Akira Itoh, Shoichi Kawasaki, Noriyuki Kita, Noriko T. Kitajima, Kouki Komatani, Shintaro Krot, Alexander N. Liu, Ming-Chang Masuda, Yuki Morita, Mayu Moynier, Fréderic Motomura, Kazuko Nakai, Izumi Nagashima, Kazuhide Nguyen, Ann Nittler, Larry Onose, Morihiko Pack, Andreas Park, Changkun Piani, Laurette Qin, Liping Russell, Sara S. Sakamoto, Naoya Schönbächler, Maria Tafla, Lauren Tang, Haolan Terada, Kentaro Terada, Yasuko Usui, Tomohiro Wada, Sohei Wadhwa, Meenakshi Walker, Richard J. Yamashita, Katsuyuki Yin, Qing-Zhu Yoneda, Shigekazu Young, Edward D. Yui, Hiroharu Zhang, Ai-Cheng Nakamura, Tomoki Naraoka, Hiroshi Noguchi, Takaaki Okazaki, Ryuji Sakamoto, Kanako Yabuta, Hikaru Abe, Masanao Miyazaki, Akiko Nakato, Aiko Nishimura, Masahiro Okada, Tatsuaki Yada, Toru Yogata, Kasumi Nakazawa, Satoru Saiki, Takanao Tanaka, Satoshi Terui, Fuyuto Tsuda, Yuichi Watanabe, Sei-Ichiro Yoshikawa, Makoto Tachibana, Shogo Yurimoto, Hisayoshi Max Planck Institute for Solar System Research Justus-von-Liebig-Weg 3 Göttingen37077 Germany Department of Earth and Planetary Sciences Tokyo Institute of Technology Tokyo152-8551 Japan Graduate School of Engineering Materials Science and Engineering Tokyo Denki University Tokyo120-8551 Japan Institut de Minéralogie de Physique des Matériaux et de Cosmochimie Sorbonne Université Museum National d'Histoire Naturelle CNRS UMR 7590 IRD Paris75005 France Earth and Planets Laboratory Carnegie Institution for Science WashingtonDC20015 United States McDonnell Center for the Space Sciences and Physics Department Washington University 35 St. LouisMO63130 United States Geochemical Research Center The University of Tokyo Tokyo113-0033 Japan Guangzhou Institute of Geochemistry Chinese Academy of Sciences GD Guangzhou510640 China Departement of Natural History Sciences Hokkaido University Sapporo001-0021 Japan Centre for Star and Planet Formation Globe Institute University of Copenhagen Copenhagen1350 Denmark Bayerisches Geoinstitut Universität Bayreuth Bayreuth95447 Germany Université Paris Cité Institut de Physique du Globe de Paris CNRS Paris75005 France Department of Earth Science Education Seoul National University Seoul08826 Korea Republic of Department of the Geophysical Sciences Enrico Fermi Institute The University of Chicago 5734 South Ellis Avenue Chicago60637 United States Faculty of Geosciences and Geography University of Göttingen GöttingenD-37077 Germany Faculty of Science Ibaraki University Mito310-8512 Japan ISAS/JSEC JAXA Sagamihara252-5210 Japan Research Center for Advanced Science and Technology The University of Tokyo Tokyo153-8904 Japan Research Institute for Marine Resources Utilization Japan Agency for Marine-Earth Science and Technology Kanagawa237-0061 Japan Departement of Earth and Planetary Sciences Nagoya University Nagoya464-8601 Japan Osaka Application Laboratory SBUWDX Rigaku Corporation Osaka569-1

The isotopic compositions of samples returned from Cb-type asteroid Ryugu and Ivuna-type (CI) chondrites are distinct from other carbonaceous chondrites, which has led to the suggestion that Ryugu/CI chondrites formed in a different region of the accretion disk, possibly around the orbits of Uranus and Neptune. We show that, like for Fe, Ryugu and CI chondrites also have indistinguishable Ni isotope anomalies, which differ from those of other carbonaceous chondrites. We propose that this unique Fe and Ni isotopic composition reflects different accretion efficiencies of small FeNi metal grains among the carbonaceous chondrite parent bodies. The CI chondrites incorporated these grains more efficiently, possibly because they formed at the end of the disk’s lifetime, when planetesimal formation was also triggered by photoevaporation of the disk. Isotopic variations among carbonaceous chondrites may thus reflect fractionation of distinct dust components from a common reservoir, implying CI chondrites/Ryugu may have formed in the same region of the accretion disk as other carbonaceous chondrites. © 2024, CC BY.

关键词： Nickel

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Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma

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Frontiers of Medicine 2021年第2期15卷 275-291页

作者： Na Qin Yuancheng Li Cheng Wang Meng Zhu Juncheng Dai Tongtong Hong Demetrius Albanes Stephen Lam Adonina Tardon Chu Chen Gary Goodman Stig EBojesen Maria Teresa Landi Mattias Johansson Angela Risch H-Erich Wichmann Heike Bickeboller Gadi Rennert Susanne Arnold Paul Brennan John KField Sanjay Shete Loic Le Marchand Olle Melander Hans Brunnstrom Geoffrey Liu Rayjean JHung Angeline Andrew Lambertus AKiemeney Shan Zienolddiny Kjell Grankvist Mikael Johansson Neil Caporaso Penella Woll Philip Lazarus Matthew BSchabath Melinda CAldrich Victoria LStevens Guangfu Jin David CChristiani Zhibin Hu Christopher IAmos Hongxia Ma Hongbing Shen Department of Epidemiology Center for Global HealthSchool of Public HealthNanjing Medical UniversityNanjing 211166China State Key Laboratory of Reproductive Medicine Center for Global HealthNanjing Medical UniversityNanjing 211166China Department of Bioinformatics School of Biomedical Engineering and InformaticsNanjing Medical UniversityNanjing 211166China Jiangsu Key Lab of Cancer Biomarkers Prevention and TreatmentCollaborative Innovation Center for Cancer MedicineNanjing Medical UniversityNanjing 211166China China International Cooperation Center for Environment and Human Health School of Public HealthNanjing Medical UniversityNanjing 211166China Division of Cancer Epidemiology and Genetics National Cancer InstituteBethesdaMD 20892-9304USA Department of Integrative Oncology British Columbia Cancer AgencyVancouverBC V5Z 1L3Canada Faculty of Medicine University of Oviedo and CIBERESPOviedo 33006Spain Program in Epidemiology Public Health Sciences DivisionFred Hutchinson Cancer Research CenterSeattleWA 98109-1024USA Public Health Sciences Division Swedish Cancer InstituteSeattleWA 98026USA Department of Clinical Biochemistry Copenhagen University HospitalCopenhagen DK-1017Denmark National Cancer Institute BethesdaMD 20892-9304USA Genetic Epidemiology Group International Agency for Research on CancerLyon 69372France Cancer Center Cluster Salzburg at PLUS Department of Molecular BiologyUniversity of SalzburgHeidelberg 5020Austria Institute of Medical Informatics Biometry and EpidemiologyChair of EpidemiologyLudwig Maximilians UniversityMunichBavaria 80539Germany Department of Genetic Epidemiology University Medical Center GoettingenGoettingen 37075Germany Technion Faculty of Medicine Carmel Medical CenterHaifa 3448516Israel Markey Cancer Center University of KentuckyLexingtonKY 40506-0054USA Department of Molecular and Clinical Cancer Medicine Roy Castle Lung Cancer Research ProgrammeThe University of Liverpool Institute of Translational MedicineLiverpool L697Z

Although genome-wide association studies have identified more than eighty genetic variants associated with non-small cell lung cancer(NSCLC)risk,biological mechanisms of these variants remain largely *** integrating a large-scale genotype data of 15581 lung adenocarcinoma(AD)cases,8350 squamous cell carcinoma(SqCC)cases,and 27355 controls,as well as multiple transcriptome and epigenomic databases,we conducted histology-specific meta-analyses and functional annotations of both reported and novel susceptibility *** identified 3064 credible risk variants for NSCLC,which were overrepresented in enhancer-like and promoter-like histone modification peaks as well as DNase I hypersensitive *** factor enrichment analysis revealed that USF1 was AD-specific while CREB1 was *** annotation and genebased analysis implicated 894 target genes,including 274 specifics for AD and 123 for SqCC,which were overrepresented in somatic driver genes(ER=1.95,P=0.005).Pathway enrichment analysis and Gene-Set Enrichment Analysis revealed that AD genes were primarily involved in immune-related pathways,while SqCC genes were homologous recombination deficiency *** results illustrate the molecular basis of both wellstudied and new susceptibility loci of NSCLC,providing not only novel insights into the genetic heterogeneity between AD and SqCC but also a set of plausible gene targets for post-GWAS functional experiments.

关键词： lung cancer genome-wide association study function annotation immune homologous recombination repair deficiency genetic heterogeneity

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