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Predicting circRNA-Disease Associations by Using Multi-Biomolecular Networks Based on Variational Graph Auto-Encoder with Attention Mechanism

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Chinese Journal of Electronics 2024年第6期33卷 1526-1537页

作者： Jing YANG Xiujuan LEI Yi PAN School of Computer Science Shaanxi Normal University Faculty of Computer Science and Control Engineering Shenzhen Institute of Advanced TechnologyChinese Academy of Sciences Shenzhen Key Laboratory of Intelligent Bioinformatics Shenzhen Institute of Advanced Technology

CircRNA-disease association(CDA) can provide a new direction for the treatment of diseases. However,traditional biological experiment is time-consuming and expensive, this urges us to propose the reliable computational model to predict the associations between circRNAs and diseases. And there is existing more and more evidence indicates that the combination of multi-biomolecular information can improve the prediction accuracy. We propose a novel computational model for CDA prediction named MBCDA, we collect the multi-biomolecular information including circRNA, disease, miRNA and lncRNA based on 6 databases, and construct three heterogeneous network among them, then the multi-heads graph attention networks are applied to these three networks to extract the features of circRNAs and diseases from different views, the obtained features are put into variational graph auto-encoder(VGAE) network to learn the latent distributions of the nodes, a fully connected neural network is adopted to further process the output of VGAE and uses sigmoid function to obtain the predicted probabilities of circRNA-disease *** a result, MBCDA achieved the values of AUC and AUPR under 5-fold cross-validation of 0.893 and 0.887. MBCDA was applied to the analysis of the top-25 predicted associations between circRNAs and diseases, these experimental results show that our proposed MBCDA is a powerful computational model for CDA prediction.

关键词： Knowledge engineering Attention mechanisms Computational modeling Biological system modeling Predictive models Feature extraction Heterogeneous networks Topology Data mining Diseases

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Electronic Waste Management Using Smart Contracts on the Blockchain Platform

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SN computer science 2024年第7期5卷 1-30页

作者： Rafiee, Azam Feyzi, Farid Shahbahrami, Asadollah Department of Computer Engineering Faculty of Engineering University of Guilan Rasht Iran Bernoulli Institute for Mathematics Computer Science and Artificial Intelligence Faculty of Science and Engineering University of Groningen Groningen Netherlands

Nowadays, electronic waste is no longer considered ordinary waste;instead, it is recognized as valuable and hazardous waste containing significant amounts of precious metals. Therefore, it should not be disposed of illegally in any location. Traditional processes for managing electronic waste may not be suitable for the industry's future needs due to environmental pollution, high costs, and low efficiency. Consequently, the management of electronic waste has become a necessity in today's world. This research focuses on utilizing smart contracts to establish stable and regular waste management processes and activities. The proposed method encompasses all steps involved in waste management, including collection, separation, routing, transportation, destruction, and recycling. These steps are managed within a blockchain platform and under a smart contract. To simulate and evaluate the effectiveness of the proposed method, colored petri nets (CPNs) have been employed. The results demonstrate that the presented approach establishes a balanced situation in terms of reliability, response time, and availability parameters when providing services to customers within the context of a smart city. These results are achieved through various steps such as registration, authentication, interaction, routing, and checking the capacity of smart bins. The utilization of blockchain technology and smart contracts ensures transparency, efficiency, and accountability throughout the waste management process. The use of CPNs for simulation and evaluation further validates the effectiveness of the proposed method in achieving reliable and timely waste management services in a smart city environment. © The Author(s), under exclusive licence to Springer Nature Singapore Pte Ltd. 2024.

关键词： Blockchain Electronic waste Petri net Smart contract

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A location-based fog computing optimization of energy management in smart buildings:DEVS modeling and design of connected objects

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Frontiers of computer science 2023年第2期17卷 179-195页

作者： Abdelfettah MAATOUG Ghalem BELALEM Saïd MAHMOUDI Computer Science Department Faculty of Exact and Applied SciencesUniversity of Oran 1 Ahmed Ben BellaOran 31000Algeria Science and Technology Department Faculty of Science and TechnologyUniversity of TIARETTiaret 14000Algeria Computer Science Department Faculty of EngineeringUniversity of MonsMons 7000Belgium

Nowadays,smart buildings rely on Internet of things(loT)technology derived from the cloud and fog computing paradigms to coordinate and collaborate between connected *** is characterized by low latency with a wider spread and geographically distributed nodes to support mobility,real-time interaction,and location-based *** provide optimum quality of user life in moderm buildings,we rely on a holistic Framework,designed in a way that decreases latency and improves energy saving and services efficiency with different *** EVent system Specification(DEVS)is a formalism used to describe simulation models in a modular *** this work,the sub-models of connected objects in the building are accurately and independently designed,and after installing them together,we easily get an integrated model which is subject to the fog computing *** results show that this new approach significantly,improves energy efficiency of buildings and reduces ***,with DEVS,we can easily add or remove sub-models to or from the overall model,allowing us to continually improve our designs.

关键词： smart building energy consumption IoT fog computing Framework DEVS simulation models

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Variant Wasserstein Generative Adversarial Network Applied on Low Dose CT Image Denoising

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computers, Materials & Continua 2023年第5期75卷 4535-4552页

作者： Anoud A.Mahmoud Hanaa A.Sayed Sara S.Mohamed Department of Mathematics and Computer Science Faculty of ScienceNew Valley UniversityNew Valley72511Egypt Department of Computer Science College of Computer Science and Engineering Taibah UniversityMedina42221KSA Department of Mathematics Faculty of ScienceAssiut UniversityAssiut71516Egypt

Computed Tomography(CT)images have been extensively employed in disease diagnosis and treatment,causing a huge concern over the dose of radiation to which patients are *** the radiation dose to get a better image may lead to the development of genetic disorders and cancer in the patients;on the other hand,decreasing it by using a Low-Dose CT(LDCT)image may cause more noise and increased artifacts,which can compromise the ***,image reconstruction from LDCT image data is necessary to improve radiologists’judgment and *** study proposed three novel models for denoising LDCT images based on Wasserstein Generative Adversarial Network(WGAN).They were incorporated with different loss functions,including Visual Geometry Group(VGG),Structural Similarity Loss(SSIM),and Structurally Sensitive Loss(SSL),to reduce noise and preserve important information on LDCT images and investigate the effect of different types of loss ***,experiments have been conducted on the Graphical Processing Unit(GPU)and Central Processing Unit(CPU)to compare the performance of the proposed *** results demonstrated that images from the proposed WGAN-SSIM,WGAN-VGG-SSIM,and WGAN-VGG-SSL were denoised better than those from state-of-the-art models(WGAN,WGAN-VGG,and SMGAN)and converged to a stable equilibrium compared with WGAN and *** proposed models are effective in reducing noise,suppressing artifacts,and maintaining informative structure and texture details,especially WGAN-VGG-SSL which achieved a high peak-signalto-noise ratio(PNSR)on both GPU(26.1336)and CPU(25.8270).The average accuracy of WGAN-VGG-SSL outperformed that of the state-ofthe-art methods by 1 *** prove that theWGAN-VGG-SSL is more stable than the other models on both GPU and CPU.

关键词： Machine learning deep learning image denoising low dose CT loss function

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Hybrid Deep Learning Based Attack Detection for Imbalanced Data Classification

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Intelligent Automation & Soft Computing 2023年第1期35卷 297-320页

作者： Rasha Almarshdi Laila Nassef Etimad Fadel Nahed Alowidi Department of Computer Science Faculty of Computing and Information TechnologyKing Abdulaziz UniversityJeddahSaudi Arabia Department of Computer Science Faculty of Computer Science and EngineeringUniversity of HailHailSaudi Arabia

Internet of Things(IoT)is the most widespread and fastest growing technology *** to the increasing of IoT devices connected to the Internet,the IoT is the most technology under security *** IoT devices are not designed with security because they are resource constrained ***,having an accurate IoT security system to detect security attacks is *** Detection Systems(IDSs)using machine learning and deep learning techniques can detect security attacks *** paper develops an IDS architecture based on Convolutional Neural Network(CNN)and Long Short-Term Memory(LSTM)deep learning *** implement our model on the UNSW-NB15 dataset which is a new network intrusion dataset that cate-gorizes the network traffic into normal and attacks *** this work,interpolation data preprocessing is used to compute the missing ***,the imbalanced data problem is solved using a synthetic data generation *** experiments have been implemented to compare the performance results of the proposed model(CNN+LSTM)with a basic model(CNN only)using both balanced and imbalanced ***,with some state-of-the-art machine learning classifiers(Decision Tree(DT)and Random Forest(RF))using both balanced and imbalanced *** results proved the impact of the balancing *** proposed hybrid model with the balance technique can classify the traffic into normal class and attack class with reasonable accuracy(92.10%)compared with the basic CNN model(89.90%)and the machine learning(DT 88.57%and RF 90.85%)***,comparing the proposed model results with the most related works shows that the proposed model gives good results compared with the related works that used the balance techniques.

关键词： IoT IDS deep learning machine learning CNN LSTM

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Deep Learning Utility for Gas/Odor Sensor Signature Analysis 2

Deep Learning Utility for Gas/Odor Sensor Signature Analysis

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2nd International Conference on Machine Learning and Autonomous Systems, ICMLAS 2025

作者： Raut, Yashasvi Chaudhri, Shiv Nath Faculty of Engineering and Technology Department of Computer Science and Engineering Maharashtra India

ISBN: (纸本)9798331505745

Gas/odor sensors are integral components of sensor systems used in diverse applications such as food quality control, environmental monitoring, medical diagnostics, odor profiling, industrial safety, agriculture, explosives detection, wine tasting, pharmaceutical quality control, and toxic gas detection. Traditional approaches in this domain of gas/odor sensing technologies face challenges related to accuracy, cross-sensitivity, and drifted real-time performance. The integration of deep learning techniques with gas sensors has shown promise in overcoming these limitations. Moreover, this amalgamation of gas sensing and deep learning strategies enables accurate identification of gases/odors, handling complex patterns, and leading optimal consumption of resources. In this paper, an overview of advancements in deep learning-enabled gas sensing has been presented that focused on methodologies, sensor types, and applications. This review also highlights the state-of-the-art techniques and identifies gaps for future directions for research. © 2025 IEEE.

关键词： Damage detection

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Advances in Manta Ray Foraging Optimization:A Comprehensive Survey

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Journal of Bionic engineering 2024年第2期21卷 953-990页

作者： Farhad Soleimanian Gharehchopogh Shafi Ghafouri Mohammad Namazi Bahman Arasteh Department of Computer Engineering Urmia BranchIslamic Azad UniversityUrmiaIran Department of Computer Engineering Tabriz BranchIslamic Azad UniversityTabrizIran Department of Computer Engineering Maybod BranchIslamic Azad UniversityMaybodIran Department of Software Engineering Faculty of Engineering and Natural ScienceIstinye UniversityIstanbulTurkey

This paper comprehensively analyzes the Manta Ray Foraging Optimization(MRFO)algorithm and its integration into diverse academic *** in 2020,the MRFO stands as a novel metaheuristic algorithm,drawing inspiration from manta rays’unique foraging behaviors—specifically cyclone,chain,and somersault *** biologically inspired strategies allow for effective solutions to intricate physical *** its potent exploitation and exploration capabilities,MRFO has emerged as a promising solution for complex optimization *** utility and benefits have found traction in numerous academic *** its inception in 2020,a plethora of MRFO-based research has been featured in esteemed international journals such as IEEE,Wiley,Elsevier,Springer,MDPI,Hindawi,and Taylor&Francis,as well as at international conference *** paper consolidates the available literature on MRFO applications,covering various adaptations like hybridized,improved,and other MRFO variants,alongside optimization *** trends indicate that 12%,31%,8%,and 49%of MRFO studies are distributed across these four categories respectively.

关键词： Manta ray foraging optimization Metaheuristic algorithms Hybridization Improved Optimization

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False Data Injection Attack Detection and Localization Framework in Power Distribution Systems Using a Novel Ensemble of CNNs and Explainable Artificial Intelligence

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IEEE Transactions on Industry Applications 2025年第3期61卷 4801-4811页

作者： Dehbozorgi, Mohammad Reza Rastegar, Mohammad Arani, Mohammadreza F. M. Shiraz University School of Electrical and Computer Engineering Shiraz Iran Toronto Metropolitan University Faculty of Engineering and Architectural Science Toronto Canada

Cyber-physical power systems are vulnerable to cyber-attacks, especially false data injection attacks (FDIAs). FDIAs against distribution system state estimation (DSSE), which alter state estimation (SE) by changing meter readings, have received researchers' attention in recent years. A common defense against FDIAs in the literature is the use of labeled data to train classifiers as FDIA detectors. However, this approach's performance can be limited by the highly imbalanced nature of FDIA datasets. The black box characteristics of the machine learning models can make them hard to trust and adopt in important applications. Hence, we propose an innovative explainable artificial intelligence (XAI)-enhanced ensemble-based detection and localization model that leverages convolutional neural networks (CNNs) and support vector machine (SVM). The ensemble model uses SVM to merge various spatiotemporal CNNs' outputs. Training these CNNs on under-sampled subsets of the majority class and using their ensemble addresses class imbalance. This paper leverages XAI to enhance the interpretability of the detection process and improve localization accuracy. The localization process uses the outputs of an XAI technique, gradient-weighted class activation mapping, to aid the majority-voting-based localization ensemble model. Our model can also detect FDIAs during the distribution feeder's topology changes. Extensive simulations on IEEE 13-bus and IEEE 123-bus feeders prove the proposed under-sampling-based detection approach as an alternative to prevalent over-sampling methods like generative adversarial networks (GANs), offering a novel solution to class imbalance challenges. The paper also provides a comprehensive analysis of the proposed spatiotemporal model's performance, demonstrating its superiority over temporal CNNs. © 1972-2012 IEEE.

关键词： DC distribution systems

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Fine-Tuned Attribute Weighted Naïve Bayes with Modified Partial Instances Reduction for Gaming Disorder Classification

HighTech and Innovation Journal

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HighTech and Innovation Journal 2025年第1期6卷 67-80页

作者： Latubessy, Anastasya Wardoyo, Retantyo Musdholifah, Aina Kusrohmaniah, Sri Doctoral Program Department of Computer Science and Electronics Faculty of Mathematics and Natural Science Universitas Gadjah Mada Yogyakarta55281 Indonesia Department of Informatics Engineering Faculty of Engineering Universitas Muria Kudus Indonesia Department of Computer Science and Electronics Faculty of Mathematics and Natural Science Universitas Gadjah Mada Yogyakarta55281 Indonesia Department of Psychology Faculty of Psychology Universitas Gadjah Mada Yogyakarta55281 Indonesia

Fine Tuning Attribute Weighted Naïve Bayes (FTAWNB) is a reliable modified Naïve Bayes model. Even though it is able to provide high accuracy on ordinal data, this model is sensitive to outliers. To improve the performance of FTAWNB, this research modified the Partial Instances Reduction (PIR) technique to make the FTAWNB more adaptive to outliers. Nevertheless, in contrast to the original PIR technique, which substitutes missing values for data values deemed outliers, the PIR technique suggested in this study replaces data values deemed outliers using a Naïve Bayes weighting approach. The attribute values from the outlier data are replaced with the highest probability values for the attributes in the actual class. This PIR technique is referred to as modified PIR. The FTAWNB model with modified PIR has been evaluated using the Gaming Disorder dataset. Replacing the four attributes with the least amount of information resulted in accuracy gains of 99.74%, an increase of 1.53% over the FTAWNB model. The experimental result shows that adding the modified PIR technique to the FTAWNB model can handle the outlier in the data, proving it by increasing the performance in terms of accuracy, precision, and recall without pruning the dataset used. © 2025, Ital Publication. All rights reserved.

关键词： Attribute Weighted Classification Fine-Tune Gaming Disorder Instances Reduction Naïve Bayes

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Security to text (S2T): multi-layered based security approaches for secret text content

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Multimedia Tools and Applications 2025年第15期84卷 15151-15171页

作者： Kashid, Shamal Awasthi, Lalit K. Berwal, Krishan Department of Computer Science and Engineering National Institute of Technology Uttarakhand IN Srinagar India Faculty of Communication Engineering Military College of Telecommunication Engineering IN Mhow India

In the digital world, text data is produced in an unstructured manner across various communication channels. Extracting valuable information from such data with security is crucial and requires the development of techniques in text mining, information retrieval, and natural language processing (NLP). To solve this issue, we introduce two novel approaches: keyword extraction (KE) and a multi-layered secret sharing scheme (MLSS) to provide security to extracted keywords rather than overall text documents. The KE approach encompasses a sequence of text pre-processing procedures, including tokenization, stopword removal, stemming, and bag of words representation, followed by indexing. This methodology aims to efficiently extract keywords from text datasets. For this research work, we have proposed three datasets, including text messages, whatsapp messages, and electronic mail. MLSS enhances the security of extracted textual data by leveraging text pre-processing steps. This scheme ensures better confidentiality and the non-revealment of sensitive information. Additionally, we evaluate our KE model on our dataset as well as on standard datasets. Experimental results demonstrate the effectiveness of our proposed security to text (S2T) model, which outperform existing state-of-the-art approaches. The model obtains a 100% correlation between the reconstructed text and the original text. © The Author(s), under exclusive licence to Springer science+Business Media, LLC, part of Springer Nature 2024.

关键词： Extraction

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