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A Runge Kutta Discontinuous Galerkin Method for Lagrangian Compressible Euler Equations in Two-Dimensions

Communications in computational Physics 2014年第4期15卷 1184-1206页

作者： Zhenzhen Li Xijun Yu Jiang Zhu Zupeng Jia School of Mathematical Sciences University of Science and Technology of ChinaHefei 230026P.R.China Graduate School China Academy of Engineering PhysicsBeijing 100088P.R.China Laboratory of Computational Physics Institute of Applied Physics and Computational MathematicsBeijing 100088P.R.China National Laboratory for Scientific Computing LNCC/MCTIAvenida Getúlio Vargas 33325651-075 PetrópolisRJBrazil

This paper presents a new Lagrangian type scheme for solving the Euler equations of compressible gas *** this new scheme the system of equations is discretized by Runge-Kutta Discontinuous Galerkin(RKDG)method,and the mesh moves with the fluid *** scheme is conservative for the mass,momentum and total energy and maintains second-order *** scheme avoids solving the geometrical part and has free *** of some numerical tests are presented to demonstrate the accuracy and the non-oscillatory property of the scheme.

关键词： Lagrangian type scheme compressible Euler equations RKDG method conservative scheme

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Hydrodynamic interaction between overlapping domains during recurrence of registration within planar lipid bilayer membranes

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Physical Review E 2014年第3期89卷 032717-032717页

作者： Tao Han Trevor P. Bailey Mikko Haataja Department of Mechanical and Aerospace Engineering Princeton Institute for the Science and Technology of Materials (PRISM) and Program in Applied and Computational Mathematics (PACM) Princeton University Princeton New Jersey 08544 USA

Due to a thermodynamic coupling between the two leaflets comprising a lipid bilayer, compositional lipid domains residing within opposing leaflets are often found in registry. If the system is perturbed by displacing one domain relative to the other, diffusive and advective lipid fluxes are established to restore equilibrium and reestablish domain overlap. In this work, we focus on the advective part of the process, and first derive an analytical expression for the hydrodynamic drag coefficient associated with the advective flow for the special case of perfect domain overlap. The resulting expression identifies parameter regions where sliding friction between the leaflets dominates over viscous dissipation within the leaflets or vice versa. It is shown that in all practically relevant cases, sliding friction between the leaflets is the dominant factor. Finally, we investigate the domain separation dependence of the hydrodynamic drag coefficient via direct simulations of a continuum diffuse interface model, and provide useful empirical expressions for its behavior.

关键词： HYDRODYNAMICS BILAYER lipid membranes DRAG coefficient ENERGY dissipation SLIDING friction FLUX (Energy)

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Radiative transport for two-photon light

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Physical Review A 2014年第3期90卷 033815-033815页

作者： Vadim A. Markel John C. Schotland Department of Radiology Department of Bioengineering and Graduate Group in Applied Mathematics and Computational Science University of Pennsylvania Philadelphia Pennsylvania 19104 USA Department of Mathematics and Department of Physics University of Michigan Ann Arbor Michigan 48109 USA

We consider the propagation of two-photon light in a random medium. We show that the Wigner transform of the two-photon amplitude obeys an equation that is analogous to the radiative transport equation for classical l... 详细信息

关键词： LIGHT propagation PHOTONS WIGNER distribution RANDOM measures CONVECTION-diffusion equations RADIATION

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Parallel Multicore CSB Format and Its Sparse Matrix Vector Multiplication

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Advances in Linear Algebra & Matrix Theory 2014年第1期4卷 1-8页

作者： Bing Yang Shuo Gu Tong-Xiang Gu Cong Zheng Xing-Ping Liu Graduate School of Chinese Academy of Engineering Physics Beijing China Laboratory of Computational Physics Institute of Applied Physics and Computational Mathematics BeijingChina School of Electronic Engineering University of Electronic Science and Technology of China Chengdu China

Sparse Matrix Vector Multiplication (SpMV) is one of the most basic problems in scientific and engineering computations. It is the basic operation in many realms, such as solving linear systems or eigenvalue problems. Nowadays, more than 90 percent of the world’s highest performance parallel computers in the top 500 use multicore architecture. So it is important practically to design the efficient methods of computing SpMV on multicore parallel computers. Usually, algorithms based on compressed sparse row (CSR) format suffer from a number of nonzero elements on each row so hardly as to use the multicore structure efficiently. Compressed Sparse Block (CSB) format is an effective storage format which can compute SpMV efficiently in a multicore computer. This paper presents a parallel multicore CSB format and SpMV based on it. We carried out numerical experiments on a parallel multicore computer. The results show that our parallel multicore CSB format and SpMV algorithm can reach high speedup, and they are highly scalable for banded matrices.

关键词： SpMV Multicore Parallel Computers Parallel Multicore CSB Format

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THE SIMONS OBSERVATORY: science GOALS AND FORECASTS

arXiv

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arXiv 2018年

作者： Ade, Peter Aguirre, James Ahmed, Zeeshan Aiola, Simone Ali, Aamir Alonso, David Alvarez, Marcelo A. Arnold, Kam Ashton, Peter Austermann, Jason Awan, Humna Baccigalupi, Carlo Baildon, Taylor Barron, Darcy Battaglia, Nick Battye, Richard Baxter, Eric Bazarko, Andrew Beall, James A. Bean, Rachel Beck, Dominic Beckman, Shawn Beringue, Benjamin Bianchini, Federico Boada, Steven Boettger, David Bond, J. Richard Borrill, Julian Brown, Michael L. Bruno, Sarah Marie Bryan, Sean Calabrese, Erminia Calafut, Victoria Calisse, Paolo Carron, Julien Challinor, Anthony Chesmore, Grace Chinone, Yuji Chluba, Jens Cho, Hsiao-Mei Sherry Choi, Steve Coppi, Gabriele Cothard, Nicholas F. Coughlin, Kevin Crichton, Devin Crowley, Kevin D. Crowley, Kevin T. Cukierman, Ari D’Ewart, John M. Dünner, Rolando de Haan, Tijmen Devlin, Mark Dicker, Simon Didier, Joy Dobbs, Matt Dober, Bradley Duell, Cody J. Duff, Shannon Duivenvoorden, Adri Dunkley, Jo Dusatko, John Errard, Josquin Fabbian, Giulio Feeney, Stephen Ferraro, Simone Fluxà, Pedro Freese, Katherine Frisch, Josef C. Frolov, Andrei Fuller, George Fuzia, Brittany Galitzki, Nicholas Gallardo, Patricio A. Ghersi, Jose Tomas Galvez Gao, Jiansong Gawiser, Eric Gerbino, Martina Gluscevic, Vera Goeckner-Wald, Neil Golec, Joseph Gordon, Sam Gralla, Megan Green, Daniel Grigorian, Arpi Groh, John Groppi, Chris Guan, Yilun Gudmundsson, Jon E. Han, Dongwon Hargrave, Peter Hasegawa, Masaya Hasselfield, Matthew Hattori, Makoto Haynes, Victor Hazumi, Masashi He, Yizhou Healy, Erin Henderson, Shawn W. Hervias-Caimapo, Carlos Hill, Charles A. Hill, J. Colin Hilton, Gene Hilton, Matt Hincks, Adam D. Hinshaw, Gary Hložek, Renée Ho, Shirley Ho, Shuay-Pwu Patty Howe, Logan Huang, Zhiqi Hubmayr, Johannes Huffenberger, Kevin Hughes, John P. Ijjas, Anna Ikape, Margaret Irwin, Kent Jaffe, Andrew H. Jain, Bhuvnesh Jeong, Oliver Kaneko, Daisuke Karpel, Ethan D. Katayama, Nobuhiko Keating, Brian Kernasovskiy, Sarah S. Keskitalo, Reijo Kisner, Theodore Kiuchi, Kenji Klein, Jeff Knowles, Kenda Koopman, Brian Kosowsk School of Physics and Astronomy Cardiff University The Parade CardiffCF24 3AA United Kingdom Department of Physics and Astronomy University of Pennsylvania 209 South 33rd Street PhiladelphiaPA19104 United States Kavli Institute for Particle Astrophysics and Cosmology Menlo ParkCA94025 United States SLAC National Accelerator Laboratory Menlo ParkCA94025 United States Joseph Henry Laboratories of Physics Jadwin Hall Princeton University PrincetonNJ08544 United States Center for Computational Astrophysics Flatiron Institute 162 5th Avenue New YorkNY10010 United States Department of Physics University of California BerkeleyCA94720 United States University of Oxford Denys Wilkinson Building Keble Road OxfordOX1 3RH United Kingdom Computational Cosmology Center Lawrence Berkeley National Laboratory BerkeleyCA94720 United States Department of Physics University of California San Diego CA92093 United States Physics Division Lawrence Berkeley National Laboratory BerkeleyCA94720 United States University of Tokyo Kashiwa277- 8583 Japan NIST Quantum Sensors Group 325 Broadway Mailcode 687.08 BoulderCO80305 United States Department of Physics and Astronomy Rutgers State University of New Jersey PiscatawayNJ08854-8019 United States Via Bonomea 265 Trieste34136 Italy INFN Sezione di Trieste Padriciano 99 Trieste34149 Italy Department of Physics University of Michigan Ann Arbor48103 United States Department of Physics and Astronomy University of New Mexico AlbuquerqueNM87131 United States Department of Astronomy Cornell University IthacaNY14853 United States Jodrell Bank Centre for Astrophysics School of Physics and Astronomy University of Manchester Manchester United Kingdom AstroParticule et Cosmologie Univ Paris Diderot CNRS/IN2P3 CEA/Irfu Obs de Paris Sorbonne Paris Cité France DAMTP Centre for Mathematical Sciences University of Cambridge Wilberforce Road CambridgeCB3 OWA United Kingdom School of Physics Universi

The Simons Observatory (SO) is a new cosmic microwave background experiment being built on Cerro Toco in Chile, due to begin observations in the early 2020s. We describe the scientific goals of the experiment, motivate the design, and forecast its performance. SO will measure the temperature and polarization anisotropy of the cosmic microwave background in six frequency bands centered at: 27, 39, 93, 145, 225 and 280 GHz. The initial configuration of SO will have three small-aperture 0.5-m telescopes and one large-aperture 6-m telescope, with a total of 60,000 cryogenic bolometers. Our key science goals are to characterize the primordial perturbations, measure the number of relativistic species and the mass of neutrinos, test for deviations from a cosmological constant, improve our understanding of galaxy evolution, and constrain the duration of reionization. The small aperture telescopes will target the largest angular scales observable from Chile, mapping ≈ 10% of the sky to a white noise level of 2 µK-arcmin in combined 93 and 145 GHz bands, to measure the primordial tensor-to-scalar ratio, r, at a target level of σ(r) = 0.003. The large aperture telescope will map ≈ 40% of the sky at arcminute angular resolution to an expected white noise level of 6 µK-arcmin in combined 93 and 145 GHz bands, overlapping with the majority of the Large Synoptic Survey Telescope sky region and partially with the Dark Energy Spectroscopic Instrument. With up to an order of magnitude lower polarization noise than maps from the Planck satellite, the high-resolution sky maps will constrain cosmological parameters derived from the damping tail, gravitational lensing of the microwave background, the primordial bispectrum, and the thermal and kinematic Sunyaev–Zel’dovich effects, and will aid in delensing the large-angle polarization signal to measure the tensor-to-scalar ratio. The survey will also provide a legacy catalog of 16,000 galaxy clusters and more than 20,000 extragalactic sou

关键词： Tensors

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Publisher Correction: Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity

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Nature genetics 2018年第5期50卷 766-767页

作者： Valérie Turcot Yingchang Lu Heather M Highland Claudia Schurmann Anne E Justice Rebecca S Fine Jonathan P Bradfield Tõnu Esko Ayush Giri Mariaelisa Graff Xiuqing Guo Audrey E Hendricks Tugce Karaderi Adelheid Lempradl Adam E Locke Anubha Mahajan Eirini Marouli Suthesh Sivapalaratnam Kristin L Young Tamuno Alfred Mary F Feitosa Nicholas G D Masca Alisa K Manning Carolina Medina-Gomez Poorva Mudgal Maggie C Y Ng Alex P Reiner Sailaja Vedantam Sara M Willems Thomas W Winkler Gonçalo Abecasis Katja K Aben Dewan S Alam Sameer E Alharthi Matthew Allison Philippe Amouyel Folkert W Asselbergs Paul L Auer Beverley Balkau Lia E Bang Inês Barroso Lisa Bastarache Marianne Benn Sven Bergmann Lawrence F Bielak Matthias Blüher Michael Boehnke Heiner Boeing Eric Boerwinkle Carsten A Böger Jette Bork-Jensen Michiel L Bots Erwin P Bottinger Donald W Bowden Ivan Brandslund Gerome Breen Murray H Brilliant Linda Broer Marco Brumat Amber A Burt Adam S Butterworth Peter T Campbell Stefania Cappellani David J Carey Eulalia Catamo Mark J Caulfield John C Chambers Daniel I Chasman Yii-Der I Chen Rajiv Chowdhury Cramer Christensen Audrey Y Chu Massimiliano Cocca Francis S Collins James P Cook Janie Corley Jordi Corominas Galbany Amanda J Cox David S Crosslin Gabriel Cuellar-Partida Angela D'Eustacchio John Danesh Gail Davies Paul I W Bakker Mark C H Groot Renée Mutsert Ian J Deary George Dedoussis Ellen W Demerath Martin Heijer Anneke I Hollander Hester M Ruijter Joe G Dennis Josh C Denny Emanuele Di Angelantonio Fotios Drenos Mengmeng Du Marie-Pierre Dubé Alison M Dunning Douglas F Easton Todd L Edwards David Ellinghaus Patrick T Ellinor Paul Elliott Evangelos Evangelou Aliki-Eleni Farmaki I Sadaf Farooqi Jessica D Faul Sascha Fauser Shuang Feng Ele Ferrannini Jean Ferrieres Jose C Florez Ian Ford Myriam Fornage Oscar H Franco Andre Franke Paul W Franks Nele Friedrich Ruth Frikke-Schmidt Tessel E Galesloot Wei Gan Ilaria Gandin Paolo Gasparini Jane Gibson Vilmantas Giedraitis Anette P Gjesing Penny Gordon-Larsen Mathias Gorski Hans-Jörgen Montreal Heart Institute Université de Montréal Montreal Quebec Canada. Division of Epidemiology Department of Medicine Vanderbilt-Ingram Cancer Center Vanderbilt Epidemiology Center Vanderbilt University School of Medicine Nashville TN USA. Charles Bronfman Institute for Personalized Medicine Icahn School of Medicine at Mount Sinai New York NY USA. Genetics of Obesity and Related Metabolic Traits Program Icahn School of Medicine at Mount Sinai New York NY USA. Department of Epidemiology University of North Carolina Chapel Hill NC USA. Human Genetics Center University of Texas School of Public Health University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences University of Texas Health Science Center at Houston Houston TX USA. Broad Institute of MIT and Harvard Cambridge MA USA. Department of Genetics Harvard Medical School Boston MA USA. Division of Endocrinology and Center for Basic and Translational Obesity Research Boston Children's Hospital Boston MA USA. Center for Applied Genomics Division of Human Genetics Children's Hospital of Philadelphia Philadelphia PA USA. Quantinuum Research LLC San Diego CA USA. Estonian Genome Center University of Tartu Tartu Estonia. Division of Epidemiology Department of Medicine Institute for Medicine and Public Health Vanderbilt Genetics Institute Vanderbilt University Nashville TN USA. Institute for Translational Genomics and Population Sciences LABioMed at Harbor-UCLA Medical Center Torrance CA USA. Wellcome Trust Sanger Institute Hinxton UK. Department of Mathematical and Statistical Sciences University of Colorado Denver CO USA. Wellcome Trust Centre for Human Genetics University of Oxford Oxford UK. Department of Biological Sciences Faculty of Arts and Sciences Eastern Mediterranean University Famagusta Cyprus. Max Planck Institute of Immunobiology and Epigenetics Freiburg Germany. Department of Biostatistics and Center for Statistical Genetics University of M

In the version of this article originally published, one of the two authors with the name Wei Zhao was omitted from the author list and the affiliations for both authors were assigned to the single Wei Zhao in the author list. In addition, the ORCID for Wei Zhao (Department of Biostatistics and Epidemiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA) was incorrectly assigned to author Wei Zhou. The errors have been corrected in the HTML and PDF versions of the article.

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Marginal stability in jammed packings: Quasicontacts and weak contacts

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Physical Review E 2014年第2期90卷 022114-022114页

作者： Yoav Kallus Salvatore Torquato Department of Physics Princeton University Princeton New Jersey 08544 USA Department of Chemistry Princeton University Princeton New Jersey 08544 USA Program in Applied and Computational Mathematics Princeton University Princeton New Jersey 08544 USA and Princeton Institute of the Science and Technology of Materials Princeton University Princeton New Jersey 08544 USA

Maximally random jammed (MRJ) sphere packing is a prototypical example of a system naturally poised at the margin between underconstraint and overconstraint. This marginal stability has traditionally been understood in terms of isostaticity, the equality of the number of mechanical contacts and the number of degrees of freedom. Quasicontacts, pairs of spheres on the verge of coming in contact, are irrelevant for static stability, but they come into play when considering dynamic stability, as does the distribution of contact forces. We show that the effects of marginal dynamic stability, as manifested in the distributions of quasicontacts and weak contacts, are consequential and nontrivial. We study these ideas first in the context of MRJ packing of d-dimensional spheres, where we show that the abundance of quasicontacts grows at a faster rate than that of contacts. We reexamine a calculation of Jin et al. [Phys. Rev. E 82, 051126 (2010)], where quasicontacts were originally neglected, and we explore the effect of their inclusion in the calculation. This analysis yields an estimate of the asymptotic behavior of the packing density in high dimensions. We argue that this estimate should be reinterpreted as a lower bound. The latter part of the paper is devoted to Bravais lattice packings that possess the minimum number of contacts to maintain mechanical stability. We show that quasicontacts play an even more important role in these packings. We also show that jammed lattices are a useful setting for studying the Edwards ensemble, which weights each mechanically stable configuration equally and does not account for dynamics. This ansatz fails to predict the power-law distribution of near-zero contact forces, P(f)∼fθ.

关键词： SPHERE packings POWER law (mathematics) computational complexity NP-hard problems BRAVAIS lattice

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Abstracts from the 8th International Conference on cGMP Generators, Effectors and Therapeutic Implications : Bamberg, Germany. 23-25 June, 2017

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BMC pharmacology & toxicology 2017年第SUPPL 1期18卷 64-64页

作者： Todd Milne, G. Sandner, Peter Lincoln, Kathleen A. Harrison, Paul C. Chen, Hongxing Wang, Hong Clifford, Holly Qian, Hu Sheng Wong, Diane Sarko, Chris Fryer, Ryan Richman, Jeremy Reinhart, Glenn A. Boustany, Carine M. Pullen, Steven S. Andresen, Henriette Moltzau, Lise Román Cataliotti, Alessandro Levy, Finn Olav Lukowski, Robert Frankenreiter, Sandra Friebe, Andreas Calamaras, Timothy Baumgartner, Robert McLaughlin, Angela Aronovitz, Mark Baur, Wendy Wang, Guang-Rong Kapur, Navin Karas, Richard Blanton, Robert Hell, Stefan Waldman, Scott A. Lin, Jieru E. Colon-Gonzalez, Francheska Kim, Gilbert W. Blomain, Erik S. Merlino, Dante Snook, Adam Erdmann, Jeanette Wobst, Jana Kessler, Thorsten Schunkert, Heribert Walter, Ulrich Pagel, Oliver Walter, Elena Gambaryan, Stepan Smolenski, Albert Jurk, Kerstin Zahedi, Rene Klinger, James R. Benza, Raymond L. Corris, Paul A. Langleben, David Naeije, Robert Simonneau, Gérald Meier, Christian Colorado, Pablo Chang, Mi Kyung Busse, Dennis Hoeper, Marius M. Masferrer, Jaime L. Jacobson, Sarah Liu, Guang Sarno, Renee Bernier, Sylvie Zhang, Ping Flores-Costa, Roger Currie, Mark Hall, Katherine Möhrle, Dorit Reimann, Katrin Wolter, Steffen Wolters, Markus Mergia, Evanthia Eichert, Nicole Geisler, Hyun-Soon Ruth, Peter Feil, Robert Zimmermann, Ulrike Koesling, Doris Knipper, Marlies Rüttiger, Lukas Tanaka, Yasutake Okamoto, Atsuko Nojiri, Takashi Kumazoe, Motofumi Tokudome, Takeshi Miura, Koichi Hino, Jun Hosoda, Hiroshi Miyazato, Mikiya Kangawa, Kenji Kapil, Vikas Ahluwalia, Amrita Paolocci, Nazareno Eaton, Philip Campbell, James C. Henning, Philipp Franz, Eugen Sankaran, Banumathi Herberg, Friedrich W. Kim, Choel Wittwer, M. Luo, Q. Kaila, V. Dames, S. A. Tobin, Andrew Alam, Mahmood Rudyk, Olena Krasemann, Susanne Hartmann, Kristin Prysyazhna, Oleksandra Zhang, Min Zhao, Lan Weiss, Astrid Schermuly, Ralph Moyes, Amie J. Chu, Sandy M. Baliga, Reshma S. Hobbs, Adrian J. Michalakis, Stylianos Mühlfriedel, Regine Schön, Christian Fischer, Dominik M. Wilhelm, Barbara Zobor, Ditta Kohl, Ironwood Pharmaceuticals Cambridge USA Bayer AG Drug Discovery - Cardiovascular Research Wuppertal Germany Department of Cardiometabolic Diseases Research Boehringer Ingelheim Pharmaceuticals Ridgefield USA Department of Small Molecule Drug Research Boehringer Ingelheim Pharmaceuticals Ridgefield USA Department of Pharmacology University of Oslo and Oslo University Hospital Oslo Norway Institute of Experimental Medical Research University of Oslo and Oslo University Hospital Oslo Norway Center for Heart Failure Research University of Oslo and Oslo University Hospital Oslo Norway Department of Pharmacology Toxicology and Clinical Pharmacy Institute of Pharmacy University of Tuebingen Tuebingen Germany Physiologisches Institut Universität Würzburg Würzburg Germany Molecular Cardiology Research Institute Tufts Medical Center Boston USA Present Affiliation: Division of Cardiology University of Pittsburgh Medical Center Pittsburgh USA Present Affiliation: Department of Medicine Brown University School of Medicine Providence USA Division of Cardiology Tufts Medical Center Boston USA Max Planck Institute for Biophysical Chemistry Göttingen and German Cancer Research Center (DKFZ) Heidelberg Germany Department of Pharmacology and Experimental Therapeutics Thomas Jefferson University Philadelphia USA Institut für Kardiogenetik and Universitäres Herzzentrum Lübeck Universität zu Lübeck Lübeck Germany & DZHK e.V. (German Center for Cardiovascular Research) Partner Site Hamburg/Kiel/Lübeck Lübeck Germany Deutsches Herzzentrum München Klinik für Herz- und Kreislauferkrankungen Technische Universität München Munich Germany Center for Thrombosis & Hemostasis Universitätsklinikum der Johannes Gutenberg-Universität Mainz Mainz Germany Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V Dortmund Germany Sechenov Institute of Evolutionary Physiology and Biochemistry Russian Academy of Sciences St. Petersburg Russia UCD Conway Institute UCD School of Medicine

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Calibrated Langevin-dynamics simulations of intrinsically disordered proteins

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Physical Review E 2014年第4期90卷 042709-042709页

作者： W. Wendell Smith Po-Yi Ho Corey S. O'Hern Department of Physics Yale University New Haven Connecticut 06520-8120 USA Integrated Graduate Program in Physical and Engineering Biology Yale University New Haven Connecticut 06520-8114 USA Department of Mechanical Engineering and Materials Science Yale University New Haven Connecticut 06520-8286 USA Department of Applied Physics Yale University New Haven Connecticut 06520-8267 USA Program in Computational Biology and Bioinformatics Yale University New Haven Connecticut 06520 USA

We perform extensive coarse-grained (CG) Langevin dynamics simulations of intrinsically disordered proteins (IDPs), which possess fluctuating conformational statistics between that for excluded volume random walks and collapsed globules. Our CG model includes repulsive steric, attractive hydrophobic, and electrostatic interactions between residues and is calibrated to a large collection of single-molecule fluorescence resonance energy transfer data on the interresidue separations for 36 pairs of residues in five IDPs: α−, β−, and γ-synuclein, the microtubule-associated protein τ, and prothymosin α. We find that our CG model is able to recapitulate the average interresidue separations regardless of the choice of the hydrophobicity scale, which shows that our calibrated model can robustly capture the conformational dynamics of IDPs. We then employ our model to study the scaling of the radius of gyration with chemical distance in 11 known IDPs. We identify a strong correlation between the distance to the dividing line between folded proteins and IDPs in the mean charge and hydrophobicity space and the scaling exponent of the radius of gyration with chemical distance along the protein.

关键词： LANGEVIN equations SIMULATION methods & models CONFORMATIONAL analysis MICROTUBULE-associated proteins HYDROPHOBIC compounds

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Atomic-number dependence of the magnetic-sublevel population in the autoionization state formed in dielectronic recombination

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Physical Review A 2014年第6期90卷 062702-062702页

作者： Zhimin Hu Yueming Li Xiaoying Han Daiji Kato Xiaomin Tong Hirofumi Watanabe Nobuyuki Nakamura Institute for Laser Science The University of Electro-Communications Chofu Tokyo 182-8585 Japan Research Center of Laser Fusion China Academy of Engineering Physics Mianyang 621900 China Physics Institute Heidelberg University Im Neuenheimer Feld 226 69120 Heidelberg Germany Institute of Applied Physics and Computational Mathematics P. O. Box 8009 Beijing 100088 China National Institute for Fusion Science Toki Gifu 509-5292 Japan Department of Fusion Science The Graduate University of Advanced Studies (SOKENDAI) Toki Gifu 509-5292 Japan Division of Materials Science Faculty of Pure and Applied Science University of Tsukuba Tsukuba Ibaraki 305-8573 Japan Center for Computational Sciences University of Tsukuba Tsukuba Ibaraki 305-8573 Japan Center of Applied Superconductivity and Sustainable Energy Research Chubu University Kasugai Aichi 487-8501 Japan

The magnetic-sublevel population of the autoionization state formed in dielectronic recombination (DR) of highly charged heavy ions has been experimentally investigated by combining two types of measurements with an electron beam ion trap. The two different measurements are the differential x-ray measurement at 90∘ with respect to the electron beam and the integral resonance-strength measurement. The alignment parameter, which denotes the magnetic-sublevel population distribution, has been obtained for the autoionization states [1s2s22p1/2]1 formed in DR of Li-like Pr (atomic number Z=59) and Ho (Z=67). This work is a complement to our previous work [Phys. Rev. Lett. 108, 073002 (2012)] on Li-like Au (Z=79). The experimental results are in reasonable agreement with theoretical predictions, and a strong Z-dependent tendency due to the Breit interaction has been confirmed.

关键词： PHOTON emission ELECTRON-electron interactions ION recombination ATOMIC number QUANTUM electrodynamics ELECTRON beams AUGER effect ION traps

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