Compositional lipid microdomains (“lipid rafts”) in mammalian plasma membranes are believed to facilitate many important cellular processes. While several physically distinct scenarios predicting the presence of fin...
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Compositional lipid microdomains (“lipid rafts”) in mammalian plasma membranes are believed to facilitate many important cellular processes. While several physically distinct scenarios predicting the presence of finite-sized microdomains in vivo have been proposed in the past, direct experimental verification or falsification of model predictions has remained elusive. Herein, we demonstrate that the combination of the spatial correlation and temporal fluctuation spectra of the lipid domains can be employed to unambiguously differentiate between the existing theoretical scenarios. Furthermore, the differentiation of the raft formation mechanisms using this methodology can be achieved by collecting data at physiologically relevant conditions without the need to tune control parameters.
With the increased availability of rich behavioral data sets, we present a novel combination of tools to analyze to analyze this information. Using criminal offense records as an example, we employ cross-correlation m...
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We have formulated the problem of generating dense packings of nonoverlapping, nontiling nonspherical particles within an adaptive fundamental cell subject to periodic boundary conditions as an optimization problem ca...
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We have formulated the problem of generating dense packings of nonoverlapping, nontiling nonspherical particles within an adaptive fundamental cell subject to periodic boundary conditions as an optimization problem called the adaptive-shrinking cell (ASC) formulation [S. Torquato and Y. Jiao, Phys. Rev. E 80, 041104 (2009)]. Because the objective function and impenetrability constraints can be exactly linearized for sphere packings with a size distribution in d-dimensional Euclidean space Rd, it is most suitable and natural to solve the corresponding ASC optimization problem using sequential-linear-programming (SLP) techniques. We implement an SLP solution to produce robustly a wide spectrum of jammed sphere packings in Rd for d=2, 3, 4, 5, and 6 with a diversity of disorder and densities up to the respective maximal densities. A novel feature of this deterministic algorithm is that it can produce a broad range of inherent structures (locally maximally dense and mechanically stable packings), besides the usual disordered ones (such as the maximally random jammed state), with very small computational cost compared to that of the best known packing algorithms by tuning the radius of the influence sphere. For example, in three dimensions, we show that it can produce with high probability a variety of strictly jammed packings with a packing density anywhere in the wide range [0.6, 0.7408…], where π/18=0.7408… corresponds to the density of the densest packing. We also apply the algorithm to generate various disordered packings as well as the maximally dense packings for d=2, 4, 5, and 6. Our jammed sphere packings are characterized and compared to the corresponding packings generated by the well-known Lubachevsky-Stillinger (LS) molecular-dynamics packing algorithm. Compared to the LS procedure, our SLP protocol is able to ensure that the final packings are truly jammed, produces disordered jammed packings with anomalously low densities, and is appreciably more robust an
The proton momentum distribution, accessible by deep inelastic neutron scattering, is a very sensitive probe of the potential of mean force experienced by the protons in hydrogen-bonded systems. In this work we introd...
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The proton momentum distribution, accessible by deep inelastic neutron scattering, is a very sensitive probe of the potential of mean force experienced by the protons in hydrogen-bonded systems. In this work we introduce a novel estimator for the end-to-end distribution of the Feynman paths, i.e., the Fourier transform of the momentum distribution. In this formulation, free particle and environmental contributions factorize. Moreover, the environmental contribution has a natural analogy to a free energy surface in statistical mechanics, facilitating the interpretation of experiments. The new formulation is not only conceptually but also computationally advantageous. We illustrate the method with applications to an empirical water model, ab initio ice, and one dimensional model systems.
作者:
Adam B. HopkinsFrank H. StillingerSalvatore TorquatoDepartment of Chemistry
Department of Physics Princeton Institute for the Science and Technology of Materials Program in Applied and Computational Mathematics Princeton Center for Theoretical Science Princeton University Princeton New Jersey 08544 USA and School of Natural Sciences Institute for Advanced Study Princeton New Jersey 08544 USA
The densest local packings of N identical nonoverlapping spheres within a radius Rmin(N) of a fixed central sphere of the same size are obtained using a nonlinear programming method operating in conjunction with a sto...
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The densest local packings of N identical nonoverlapping spheres within a radius Rmin(N) of a fixed central sphere of the same size are obtained using a nonlinear programming method operating in conjunction with a stochastic search of configuration space. The knowledge of Rmin(N) in d-dimensional Euclidean space Rd allows for the construction both of a realizability condition for pair-correlation functions of sphere packings and an upper bound on the maximal density of infinite sphere packings in Rd. In this paper, we focus on the two-dimensional circular disk problem. We find and present the putative densest packings and corresponding Rmin(N) for selected values of N up to N=348 and use this knowledge to construct such a realizability condition and an upper bound. We additionally analyze the properties and characteristics of the maximally dense packings, finding significant variability in their symmetries and contact networks, and that the vast majority differ substantially from the triangular lattice even for large N. Our work has implications for packaging problems, nucleation theory, and surface physics.
In the present paper, we investigate the correlated electron emission of atoms irradiated by a few-cycle laser pulse, with emphasis on the correlated longitudinal momentum spectra. We find that the spectra show clear ...
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In the present paper, we investigate the correlated electron emission of atoms irradiated by a few-cycle laser pulse, with emphasis on the correlated longitudinal momentum spectra. We find that the spectra show clear v-shaped structures, in analogy to what was observed recently in long-pulse experiments. Moreover, the patterns of the spectra depend sensitively on the carrier-envelope phase as well as the laser intensity. The v-shaped structure is more pronounced at lower and higher intensities and becomes obscure at medium intensity. At a lower intensity, upon change of the phase from 0 to π/2, the v-shaped structure shifts from the first quadrant to the third quadrant and the ratios between the double ionization yields in the first and third quadrants are found to increase by a few orders of magnitude. The semiclassical rescattering model is exploited in the preceding calculations and the underlying mechanisms are uncovered by analyzing the subcycle dynamics of classical trajectories.
We consider a long-range Ising antiferromagnet put in a transverse field (LRTIAF) with disorder. We have obtained the phase diagrams for both the classical and quantum cases. For the pure case applying quantum Monte C...
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We consider a long-range Ising antiferromagnet put in a transverse field (LRTIAF) with disorder. We have obtained the phase diagrams for both the classical and quantum cases. For the pure case applying quantum Monte Carlo method, we study the variation in order parameter (spin correlation in the Trotter direction), susceptibility, and average energy of the system for various values of the transverse field at different temperatures. The antiferromagnetic order is seen to get immediately broken as soon as the thermal or quantum fluctuations are added. We discuss generally the phase diagram for the same LRTIAF model with perturbative Sherrington-Kirkpatrick-type disorder. We find that while the antiferromagnetic order is immediately broken as one adds an infinitesimal transverse field or thermal fluctuation to the pure LRTIAF system, an infinitesimal SK spin-glass disorder is enough to induce a stable glass order in the LRTIAF. This glass order eventually gets destroyed as the thermal or quantum fluctuations are increased beyond their threshold values and the transition to paramagnetic phase occurs. Analytical studies for the phase transitions are discussed in details in each case. These transitions have been confirmed by applying classical and quantum Monte Carlo methods. We show here that the disordered LRTIAF has a surrogate incubation property of the SK spin glass phase.
Point configurations have been widely used as model systems in condensed-matter physics, materials science, and biology. Statistical descriptors, such as the n-body distribution function gn, are usually employed to ch...
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Point configurations have been widely used as model systems in condensed-matter physics, materials science, and biology. Statistical descriptors, such as the n-body distribution function gn, are usually employed to characterize point configurations, among which the most extensively used is the pair distribution function g2. An intriguing inverse problem of practical importance that has been receiving considerable attention is the degree to which a point configuration can be reconstructed from the pair distribution function of a target configuration. Although it is known that the pair-distance information contained in g2 is, in general, insufficient to uniquely determine a point configuration, this concept does not seem to be widely appreciated and general claims of uniqueness of the reconstructions using pair information have been made based on numerical studies. In this paper, we present the idea of the distance space called the D space. The pair distances of a specific point configuration are then represented by a single point in the D space. We derive the conditions on the pair distances that can be associated with a point configuration, which are equivalent to the realizability conditions of the pair distribution function g2. Moreover, we derive the conditions on the pair distances that can be assembled into distinct configurations, i.e., with structural degeneracy. These conditions define a bounded region in the D space. By explicitly constructing a variety of degenerate point configurations using the D space, we show that pair information is indeed insufficient to uniquely determine the configuration in general. We also discuss several important problems in statistical physics based on the D space, including the reconstruction of atomic structures from experimentally obtained g2 and a recently proposed “decorrelation” principle. The degenerate configurations have relevance to open questions involving the famous traveling salesman problem.
The effects of Coulomb interaction screening on photodetachment cross sections of hydrogen negative ions below the n =2 excitation threshold is investigated by using the R-matrix method with pseudostates. The contribu...
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The effects of Coulomb interaction screening on photodetachment cross sections of hydrogen negative ions below the n =2 excitation threshold is investigated by using the R-matrix method with pseudostates. The contributions of Feshbach and shape resonances to H− photodetachment cross section are presented when screening length (D) varies from D = ∞ to D = 4.6 a.u. It is found that the interaction screening has dramatic effects on the photodetachment cross sections of hydrogen negative ions in the photoelectron energy region around the n = 2 excitation threshold by strongly affecting the evolution of near-threshold resonances.
The determination of the densest packings of regular tetrahedra (one of the five Platonic solids) is attracting great attention as evidenced by the rapid pace at which packing records are being broken and the fascinat...
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The determination of the densest packings of regular tetrahedra (one of the five Platonic solids) is attracting great attention as evidenced by the rapid pace at which packing records are being broken and the fascinating packing structures that have emerged. Here we provide the most general analytical formulation to date to construct dense periodic packings of tetrahedra with four particles per fundamental cell. This analysis results in six-parameter family of dense tetrahedron packings that includes as special cases recently discovered “dimer” packings of tetrahedra, including the densest known packings with density ϕ=40004671=0.856347…. This study strongly suggests that the latter set of packings are the densest among all packings with a four-particle basis. Whether they are the densest packings of tetrahedra among all packings is an open question, but we offer remarks about this issue. Moreover, we describe a procedure that provides estimates of upper bounds on the maximal density of tetrahedron packings, which could aid in assessing the packing efficiency of candidate dense packings.
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