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An Improved Version of Texture-based Foreground Segmentation: Block-based Adaptive Segmenter

Procedia Computer Science 2018年 135卷 579-586页

作者： Kahlil Muchtar Faris Rahman Tjeng Wawan Cenggoro Arif Budiarto Bens Pardamean Nodeflux Inc. Jakarta Indonesia Syiah Kuala University Aceh Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta Indonesia 11480

Foreground segmentation is one of moving object detection techniques of computer vision applications. To date, modern moving object detection methods require complex background modeling and thresholds tuning to confront illumination changes. This paper proposes an adaptive approach based on non-overlapping block texture representation. It aims to design a computationally light and efficient solution to improve the robustness of detection. We evaluate our proposed method on internal and public sequences and provide the quantitative and qualitative measurements. Experimental results show that the proposed method can improve the results of previous method and suitable for real-time challenges.

关键词： change detection foreground segmentation texture features

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A Convolutional Neural Network-based Ancient Sundanese Character Classifier with Data Augmentation

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Procedia Computer Science 2021年 179卷 195-201页

作者： Alam Ahmad Hidayat Kartika Purwandari Tjeng Wawan Cenggoro Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

With an increasing interest in the digitization effort of ancient manuscripts, ancient character recognition becomes one of the most important areas in the automated document image analysis. In this regard, we propose a Convolutional Neural Network (CNN)-based classifier to recognize the ancient Sundanese characters obtained from a digital collection of Southeast Asian palm leaf manuscripts. In this work, we utilize two different preprocessing techniques for the dataset. The first technique involves the use of geometric transformations, noise background addition, and brightness adjustment to augment the imbalanced samples to be fed into the classifier. The second technique makes use of the Otsu’s threshold method to binarize the characters and only uses the usual geometric transformations for the data augmentation. The proposed network with different data augmentation processes is trained on the training set and tested on the testing set. Image binarization from the second technique can outperform the performance of the CNN-based classifier upon the first technique by achieving a testing accuracy of 97.74%.

关键词： ancient sundanese characters convolutional neural network data augmentation document image analysis Otsu’s threshold method

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Convolutional Neural Networks for Scops Owl Sound Classification

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Procedia Computer Science 2021年 179卷 81-87页

作者： Alam Ahmad Hidayat Tjeng Wawan Cenggoro Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

Adopting a deep learning model into bird sound classification tasks becomes a common practice in order to construct a robust automated bird sound detection system. In this paper, we employ a four-layer Convolutional Neural Network (CNN) formulated to classify different species of Indonesia scops owls based on their vocal sounds. Two widely used representations of an acoustic signal: log-scaled mel-spectrogram and Mel Frequency Cepstral Coefficient (MFCC) are extracted from each sound file and fed into the network separately to compare the model performance with different inputs. A more complex CNN that can simultaneously process the two extracted acoustic representations is proposed to provide a direct comparison with the baseline model. The dual-input network is the well-performing model in our experiment that achieves 97.55% Mean Average Precision (MAP). Meanwhile, the baseline model achieves a MAP score of 94.36% for the mel-spectrogram input and 96.08% for the MFCC input.

关键词： acoustic features bird sound classification convolutional neural network mean average precision scops owl

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Systematic Evaluation of Cross Population Polygenic Risk Score on Colorectal Cancer

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Procedia Computer Science 2021年 179卷 344-351页

作者： Bharuno Mahesworo Arif Budiarto Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

The number of findings in cancer genomics research has grown rapidly in the last decade due to the decline in the cost of human sequencing and genotyping. However, the majority of the reported significant marker associated with cancer traits are based on European and East Asian population. Large population such as South Asian and South-East Asian population are under-represented in genomics research. In this study, we explored the possibility of computing a Polygenic Risk Score (PRS) of colorectal cancer on our test sample based on reported significant Single Nucleotide Polymorphism (SNP). The SNPs used to compute the risk score were collected from GWAS Central and GWAS Catalog. Significant SNPs from IC3 study were used as a benchmark. The result shows that calculating colorectal cancer risk score using reported significant marker from different population group is possible. The p-value of our statistic model shows significant differences between case and control group risk score.

关键词： Polygenic Risk Score Cross Population Colorectal Cancer

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Repurposing transfer learning strategy of computer vision for owl sound classification

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Procedia Computer Science 2023年 216卷 424-430页

作者： Kevin William Gunawan Alam Ahmad Hidayat Tjeng Wawan Cenggoro Bens Pardamean Computer Science Department BINUS Graduate Program – Master of Computer Science Bina Nusantara University Jakarta 11480 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta 11480 Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta 11480 Indonesia

Accurately predicting an owl species based on its sound can be helpful for owl conservation. To build an accurate model for owl sound classification, deep learning is currently the most preferred algorithm, due to its excellent performance for modeling audio data. However, deep learning is generally underperformed for a small dataset, which is the case for recognizing scops owl sound. To overcome the issue, we proposed a transfer learning strategy, which is common for computer vision tasks, that can alleviate overfitting in a deep learning model for the owl sound classification. In our approach, we propose a neural network architecture consisting of the backbone of a EfficientNet model pre-trained on the massive ImageNet database. The model takes the sound input that has been converted as two image representations: Spectrogram and Mel Frequency Cepstral Coefficients. Our strategy enables the use of a relatively small size of pre-trained image classification model, which is widely available, for transfer learning in owl sound classification. Deploying the lightweight model in an automatic sound classifier provides a fast and accurate tool for various owl conservation purposes.

关键词： acoustics deep learning bird sound species detection transfer learning

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METTL4 is an snRNA m6 Am methyltransferase that regulates RNA splicing

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细胞研究（英文版） 2020年第6期30卷 544-547页

作者： Hao Chen Lei Gu Esteban A.Orellana Yuanyuan Wang Jiaojiao Guo Qi Liu Longfei Wang Zhangfei Shen Hao Wu Richard I.Gregory Yi Xing Yang Shi Division of Newborn Medicine and Program in Epigenetics Boston Children's Hospital Harvard Medical School 300 Longwood AvenueBoston MA 02115 USA Stem Cell Program Division of Hematology/Oncology Boston Children's Hospital Department of Biological Chemistry and Molecular Pharmacology Harvard Medical SchoolBoston MA 02115 USA Bioinformatics Interdepartmental Graduate Program University of California Los Angeles Los Angeles CA 90095USA College of Science Northeastern University 360 Huntington Ave. Boston MA 02115 USA Program in Cellular and Molecular Medicine Boston Children's Hospital Boston MA 02115 USA Department of Biological Chemistry and Molecular Pharmacology Harvard Medical School Boston MA 02115 USA Division of Newborn Medicine and Program in Epigenetics Boston Children's Hospital Harvard Medical School 300 Longwood AvenueBoston MA 02115 USA Program in Cellular and Molecular Medicine Boston Children's Hospital Boston MA 02115 USA Department of Biological Chemistry and Molecular Pharmacology Harvard Medical School Boston MA 02115 USA Center for Computational and Genomic Medicine The Children's Hospital of Philadelphia Philadelphia PA 19104 USA Department of Pathology and Laboratory Medicine University of PennsylvaniaPhiladelphia PA 19104 USA

Dear Editor, Protein coding mRNAs and non-coding RNAs are extensively modified by chemical modifications,1 including methylation of the N6 position of adenosine (m6A).2 While mRNA internal m6A methylation is mediated by METTL3 and METTL14, which are members of the MT-A70 family,2 N6-methylation of cap-adjacent N6,2'-O-dimethyladenosine (m6Am) is catalyzed by PCIF1.3-6 Non-coding RNAs are also m6Am methylated internally,7 but the corresponding enzyme remains *** we provide evidence that METTL4 mediates internal m6Am methylation of U2 small nuclear RNA (snRNA).

关键词： Epigenetics RNA modification RNA splicing

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Pyramid Scene Parsing Net Model for Automated Paddy Field Map using SPOT 6 Satellite Images 5

Pyramid Scene Parsing Net Model for Automated Paddy Field Ma...

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5th IEEE Asia-Pacific Conference on Geoscience, Electronics and Remote Sensing Technology, AGERS 2022

作者： Heryadi, Yaya Irwansyah, Edy Miranda, Eka Soeparno, Haryono Herlawati Hashimoto, Kiyota Bina Nusantara University Binus Graduate Program-Doctor of Computer Science Computer Science Department Jakarta11480 Indonesia School of Computer Science Bina Nusantara University Computer Science Department Jakarta11480 Indonesia School of Information Systems Bina Nusantara University Information Systems Department Jakarta11480 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Prince of Songkla University Faculty of Technology and Environment Phuket83120 Thailand

ISBN: (纸本)9798350398212

Food sustainability is still one of the main priorities for many countries as it contributes to the economy and stability of the nation. For government in many countries whose peoples consumes rice as its staple food, food self-sufficiency initiatives highly depend on accurate prediction of paddy field map. Mapping paddy field task is a challenging problem which cannot be handled manually especially when the paddy fields are spread out in very wide geographical areas such as those in Indonesia. Fortunately, wide availability of satellite imagery and the advent of deep learning technology in the past ten years have made it possible to improve efficiency of most parts of those manual works involving image semantic segmentation tasks. However, satellite image-based semantic segmentation is a challenging task. High object complexity, cloud partial occlusion, larger image size than a computer memory can stored can hinder accuracy of the image segmentation results. This paper presents a method for paddy field map generating using semantic image segmentation approach in which Pyramid Scene Parsing Net model is used for segmenting satellite imagery. The generated paddy map can be used as a basis for decision-making, especially in the agricultural sector. Analysis of local land use/land cover dynamics. The results of his experiments using SPOT 6 satellite imagery from the Pahung region of Central Kalimantan achieved average training accuracy, best training accuracy and test accuracy of 0.85, 0.86 and 0.89 respectively. These results indicated that the semantic segmentation model is suitable for addressing the same task in different crops. © 2022 IEEE.

关键词： Image enhancement

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Smart Dome 4.0: Low-Cost, Independent, Automated Energy System for Agricultural Purposes enabled by Machine Learning 2

Smart Dome 4.0: Low-Cost, Independent, Automated Energy Syst...

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2021 2nd International Symposium on Automation, Information and Computing, ISAIC 2021

作者： Budiman, Arief S Gunawan, Fergyanto Djuana, Endang Pardamean, Bens Romeli, Sugiarto Putri, Dianing Nn Aji, Daisman Pb Rahardjo, Kuat Stevanus Ilham Wibowo, M. Daffa, Nadiev Owen, Raymond Industrial Engineering Department BINUS Graduate Program - Master of Industrial Engineering Bina Nusantara University Jakarta Indonesia Department of Manufacturing and Mechanical Engineering and Technology Oregon Institute of Technology Klamath FallsOR97601 United States Electrical Engineering Department Faculty of Industrial Technology Universitas Trisakti Jakarta Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia PT. Impack Pratama Industri Tbk Jakarta Indonesia Mechanical Engineering Department Faculty of Industrial Technology Universitas Trisakti Jakarta Indonesia Industrial Engineering Department Faculty of Engineering Bina Nusantara University Jakarta Indonesia

Many economically essential crops in Indonesia (such as coffee, tea, chocolate, or copra) require storage or drying under certain environmental conditions, especially temperature and humidity. The solar dryer dome, typically used for agricultural purposes in Indonesia, produces a sufficient amount of heat to increase the evaporation rate inside the dome and reduce the moisture content of the commodity. A hybrid solar dryer accompanied by a photovoltaic panel, fan, and ventilation system is generally suitable. The system can provide an optimum environment with minimum control. However, as the outdoor temperature and humidity change dramatically, such as at night time, more control is required. Based on Industry 4.0 technologies, we have developed a new kind of hybrid solar dryer that provides an optimum environment 24/7. The system, called Smart Dome 4.0, is an intelligent, low-cost, self-sufficient drying and storage system to support Indonesia Agriculture 4.0. The system has a local power generation unit to self-sustain the required energy and operate without connecting to the electricity grid. The system utilizes a machine-learning algorithm to predict the environmental condition and optimally uses self-generated electric power. The developed Smart Dome 4.0 technology is critical to producing a sustainable solar dome under drastic environmental dynamics. © Published under licence by IOP Publishing Ltd.

关键词： Learning algorithms

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Digitizing Farmers' Land Data Collection Systems in Indonesia with the Use of Tani Millenial Apps 4

Digitizing Farmers' Land Data Collection Systems in Indonesi...

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4th International Conference on Cybernetics and Intelligent System, ICORIS 2022

作者： Bimantio, Mohammad Prasanto Putra, Dian Pratama Suparyanto, Teddy Ferhat, Amallia Nugraha, Nanda Satya Hidayat, Alam Ahmad Pardamean, Bens Institute of Agriculture STIPER Department of Food and Agricultural Technology Yogyakarta Indonesia Institute of Agriculture STIPER Department of Agrotechnology Yogyakarta Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Institute of Agriculture STIPER Department of Agricultural Socio-Economics Yogyakarta Indonesia Institute of Agriculture STIPER Department of Forestry Yogyakarta Indonesia Bina Nusantara University BINUS Graduate Program - Master of Computer Science Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9781665453950

In this era of digital world information, farmers face challenges about information management of huge data and the complexity of processes in precision farming. The data collection carried out so far can cause several difficulties, especially if the data is needed by the government or academics to support decision-making. Agricultural data collection applications only cover 12% of the market share of Android-based agriculture-based applications. In this study, Tani Milenial application is present as an alternative to support agricultural data collection activities in Indonesia. This application encourages farmers to be active and contribute independently to their role as subjects of agricultural development and is accustomed to digitally recording their agricultural activities. In this developed application system, the community, especially farmers and farmer groups, will find it easier to get information about agricultural potential data around where they carry out agricultural activities and can access this information online. Tani Milenial works as a guide to help farmers and transform agriculture but still have some gaps which should be checked and removed. The data collected can be used by various parties for research and decision-making. The app can be further improved to develop new features related to education, market information, and goods. © 2022 IEEE.

关键词： Decision making

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Health Assistant Wearable-Based Data Science System Model: A Pilot Study 3

Health Assistant Wearable-Based Data Science System Model: A...

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3rd International Conference on Information Management and Technology, ICIMTech 2018

作者： Budiarto, Arif Febriana, Trisna Suparyanto, Teddy Caraka, Rezzy Eko Pardamean, Bens Computer Science Department Bina Nusantara University School of Computer Science Jakarta11480 Indonesia Information Systems Department Bina Nusantara University School of Information Systems Jakarta11480 Indonesia Bina Nusantara University Bioinformatics and Data Science Research Center Indonesia Faculty of Science National University of Malaysia School of Mathematical Science Bangi43000 Malaysia Computer Science Department Bina Nusantara University BINUS Graduate Program-Master of Computer Science Jakarta11480 Indonesia

ISBN: (纸本)9781538658215

The rapid development of Information and Communication Technology (ICT) has an impact on the innovation of new technology that gives benefits for health. One of its latest development is wearable device technology. Nowadays, the growth of this technology market is very positive. But unfortunately the growth of this technology is not followed by the availability of supporting applications that provide maximum benefits for users by utilizing personal health and activity data. This paper is intended to provide a report of our initial research in developing a health assistant solution that utilizes wearable device generated data. The whole research process is executed using Design Thinking approach that put the users as the main consideration. This initial research is started by designing a field research that can potentially gathered users' data generated from wearable device. A series of statistical and machine learning techniques are presented to analyze time series data to create a model. Finally, to implement the model, a mobile application prototype is also proposed. The outcomes from this initial research will be used to develop a fully working solution. © 2018 IEEE.

关键词： Learning systems

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