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检索条件"机构=Graduate Program in Computational Science"
384 条 记 录,以下是221-230 订阅
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ColabFold - making protein folding accessible to all
Research Square
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Research Square 2021年
作者: Mirdita, Milot Schütze, Konstantin Moriwaki, Yoshitaka Heo, Lim Ovchinnikov, Sergey Steinegger, Martin Quantitative and Computational Biology Max Planck Institute for Biophysical Chemistry Göttingen Germany School of Biological Sciences Seoul National University Seoul Korea Republic of Department of Biotechnology Graduate School of Agricultural and Life Sciences The University of Tokyo Tokyo Japan Collaborative Research Institute for Innovative Microbiology The University of Tokyo Tokyo Japan Department of Biochemistry and Molecular Biology Michigan State University East LansingMI48824 United States JHDSF Program Harvard University CambridgeMA02138 United States FAS Division of Science Harvard University CambridgeMA02138 United States Artificial Intelligence Institute Seoul National University Seoul Korea Republic of
ColabFold offers accelerated protein structure and complex predictions by combining the fast homology search of MMseqs2 with AlphaFold2 or RoseTTAFold. ColabFold’s 20−30x faster search and optimized model use allows ... 详细信息
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The Japanese Vision for the Black Hole Explorer Mission
arXiv
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arXiv 2024年
作者: Akiyama, Kazunori Niinuma, Kotaro Hada, Kazuhiro Doi, Akihiro Hagiwara, Yoshiaki Higuchi, Aya E. Honma, Mareki Kawashima, Tomohisa Kolev, Dimitar Koyama, Shoko Masui, Sho Ohsuga, Ken Sano, Hidetoshi Takami, Hideki Tsunetoe, Yuh Uzawa, Yoshinori Akahori, Takuya Akiyama, Yuto Galison, Peter Hayashi, Takayuki J. Hirota, Tomoya Inoue, Makoto Iwata, Yuhei Johnson, Michael D. Kino, Motoki Kofuji, Yutaro Mizuno, Yosuke Moriyama, Kotaro Nagai, Hiroshi Nakamura, Kenta Notsu, Shota Ono, Fumie Oya, Yoko Oyama, Tomoaki Rana, Hannah Saida, Hiromi Saito, Ryo Saito, Yoshihiko Sasada, Mahito Sawada-Satoh, Satoko Takahashi, Mikiya M. Takamura, Mieko Tong, Edward Tsuji, Hiroyuki Yoshioka, Shogo Watanabe, Yoshimasa Massachusetts Institute of Technology Haystack Observatory WestfordMA01886 United States Mizusawa VLBI Observatory National Astronomical Observatory of Japan Iwate023-0861 Japan Black Hole Initiative Harvard University CambridgeMA02138 United States Graduate School of Sciences and Technology for Innovation Yamaguchi University Yamaguchi753-8512 Japan The Graduate School of Science Nagoya City University Aichi467-0001 Japan Institute of Space and Astronautical Science Japan Aerospace Exploration Agency Kanagawa252-5210 Japan Department of Space and Astronautical Science The Graduate University for Advanced Studies SOKENDAI Kanagawa229-8510 Japan Natural Science Laboratory Toyo University Tokyo112-8606 Japan Division of Science School of Science and Engineering Tokyo Denki University Saitama350-0394 Japan Department of Astronomy Graduate School of Science The University of Tokyo Tokyo113-0033 Japan Institute for Cosmic Ray Research The University of Tokyo Chiba277-8582 Japan Space Communication Systems Laboratory Wireless Networks Research Center National Institute of Information and Communications Technology Tokyo184-8795 Japan Graduate School of Science and Technology Niigata University Niigata950-2181 Japan Advanced Technology Center National Astronomical Observatory of Japan Tokyo181-8588 Japan Center for Computational Sciences University of Tsukuba Ibaraki305-8577 Japan Faculty of Engineering Gifu University Gifu501-1193 Japan Harvard University CambridgeMA02138 United States Azabu Junior and Senior High School Tokyo106-0046 Japan Astronomical Science Program The Graduate University for Advanced Studies SOKENDAI Tokyo181-8588 Japan Institute of Astronomy and Astrophysics Academia Sinica Taipei10617 Taiwan Center for Astrophysics Harvard & Smithsonian CambridgeMA02138 United States Kogakuin University of Technology & Engineering Academic Support Center 2665-1 Nakano Hachioji Tokyo192-0015 Japan Tsung-Dao Lee Institut
The Black Hole Explorer (BHEX) is a next-generation space very long baseline interferometry (VLBI) mission concept that will extend the ground-based millimeter/submillimeter arrays into space. The mission, closely ali... 详细信息
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Current md forcefields fail to capture key features of protein structure and fluctuations: a case study of cyclophilin a and t4 lysozyme
arXiv
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arXiv 2020年
作者: Mei, Zhe Grigas, Alex T. Treado, John D. Corres, Gabriel Melendez Vuorte, Maisa Sammalkorpi, Maria Regan, Lynne Levine, Zachary A. O’Hern, Corey S. Department of Chemistry Yale University New HavenCT06520 United States Integrated Graduate Program in Physical and Engineering Biology Yale University New HavenCT06520 United States Graduate Program in Computational Biology and Bioinformatics Yale University New HavenCT06520 United States Department of Mechanical Engineering and Materials Science Yale University New HavenCT06520 United States Department of Biology UPR Humacao Puerto RicoHumacao00792 Puerto Rico Department of Chemistry and Materials Science School of Chemical Engineering Aalto University Aalto Finland Department of Bioproducts and Biosystems School of Chemical Engineering Aalto University Aalto Finland Institute of Quantitative Biology Biochemistry and Biotechnology Center for Synthetic and Systems Biology School of Biological Sciences University of Edinburgh Edinburgh United Kingdom Department of Pathology Yale School of Medicine New HavenCT06520 United States Department of Molecular Biophysics and Biochemistry Yale University New HavenCT06520 United States Department of Physics Yale University New HavenCT06520 United States Department of Applied Physics Yale University New HavenCT06520 United States
Globular proteins undergo thermal fluctuations in solution, while maintaining an overall well-defined folded structure. In particular, studies have shown that the core structure of globular proteins differs in small, ... 详细信息
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RETRACTED ARTICLE: Classification of severe autism in fMRI using functional connectivity and conditional random forests
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Neural Computing and Applications 2019年 第12期32卷 8415-8415页
作者: Jac Fredo, A. R. Jahedi, Afrooz Reiter, Maya A. Müller, Ralph-Axel Brain Development Imaging Lab (BDIL) Psychology San Diego State University (SDSU) San Diego USA Computational Science San Diego State University/Claremont Graduate University’s Joint Doctoral Program San Diego USA Clinical Psychology San Diego State University/UC San Diego’s Joint Doctoral Program San Diego USA
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Response of aqueous dichromate and nanoclay dichromate gel dosimeters to carbon ion irradiation
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Journal of Physics: Conference Series 2013年 第1期444卷
作者: T Maeyama N Fukunishi K L Ishikawa K Fukasaku T Furuta S Takagi S Noda R Himeno S Fukuda RIKEN/Nishina Center for Accelerator-Based Science Wako Japan RIKEN/Computational Science Research Program Wako Japan The University of Tokyo/Department of Nuclear Engineering and Management Graduate School of Engineering Tokyo Japan The University of Tokyo/Photon Science Center Graduate School of Engineering Tokyo Japan Himon'ya Hospital/ Department of Neurosurgery Tokyo Japan RIKEN/Advanced Center for Computing and Communication Wako Japan The University of Tokyo/Department of Mechanical Engineering Graduate School of Engineering Tokyo Japan National Institute of Radiological Sciences/ Research Center for Charged Particle Therapy Chiba Japan
We have recently reported the significant reduction of radiation product diffusion by the incorporation of clay nanoparticles into dichromate gel (DCG) dosimeters. In this work, we investigate the influence of the nan...
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Accurately predicting anticancer peptide using an ensemble of heterogeneously trained classifiers
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Informatics in Medicine Unlocked 2023年 42卷
作者: Azim, Sayed Mehedi Sabab, Noor Hossain Nuri Noshadi, Iman Alinejad-Rokny, Hamid Sharma, Alok Shatabda, Swakkhar Dehzangi, Iman Center for Computational and Integrative Biology Rutgers University Camden 08102 NJ United States Department of Computer Science and Engineering United International University Plot 2 United City Madani Avenue BaddaDhaka 1212 Bangladesh Department of Bioengineering University of California Riverside 92507 CA United States BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering The University of New South Wales (UNSW Sydney) Sydney NSW 2052 Australia UNSW Data Science Hub UNSW Sydney Sydney NSW 2052 Australia Health Data Analytics Program AI-enabled Processes Research Centre Macquarie University Sydney 2109 Australia Institute for Integrated and Intelligent Systems Griffith University Brisbane Australia Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama 230-0045 Japan Department of Computer Science Rutgers University Camden 08102 NJ United States
The use of therapeutic peptides for the treatment of cancer has received tremendous attention in recent years. Anticancer peptides (ACPs) are considered new anticancer drugs which have several advantages over chemistr... 详细信息
来源: 评论
An ensemble machine learning model generates a focused screening library for the identification of CDK8 inhibitors
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Protein science 2024年 第6期33卷 e5007-e5007页
作者: Lin, Tony Eight Yen, Dyan HuangFu, Wei-Chun Wu, Yi-Wen Hsu, Jui-Yi Yen, Shih-Chung Sung, Tzu-Ying Hsieh, Jui-Hua Pan, Shiow-Lin Yang, Chia-Ron Huang, Wei-Jan Hsu, Kai-Cheng Graduate Institute of Cancer Biology and Drug Discovery College of Medical Science and Technology Taipei Medical University Taipei Taiwan Ph.D. Program for Cancer Molecular Biology and Drug Discovery College of Medical Science and Technology Taipei Medical University Taipei Taiwan TMU Research Center of Cancer Translational Medicine Taipei Medical University Taipei Taiwan Warshel Institute for Computational Biology The Chinese University of Hong Kong (Shenzhen) Guangdong Shenzhen China Biomedical Translation Research Center Academia Sinica Taipei Taiwan Division of Translational Toxicology National Institute of Environmental Health Sciences National Institutes of Health Durham NC United States School of Pharmacy College of Medicine National Taiwan University Taipei Taiwan Graduate Institute of Pharmacognosy College of Pharmacy Taipei Medical University Taipei Taiwan Cancer Center Wan Fang Hospital Taipei Medical University Taipei Taiwan
The identification of an effective inhibitor is an important starting step in drug development. Unfortunately, many issues such as the characterization of protein binding sites, the screening library, materials for as... 详细信息
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Iterative quantum optimization of spin glass problems with rapidly oscillating transverse fields
arXiv
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arXiv 2024年
作者: Barton, Brandon Sagal, Jacob Feeney, Sean Grattan, George Patnaik, Pratik Oganesyan, Vadim Carr, Lincoln D. Kapit, Eliot Quantum Engineering Program Colorado School of Mines 1523 Illinois St GoldenCO80401 United States Department of Applied Mathematics and Statistics Colorado School of Mines 1500 Illinois St GoldenCO80401 United States Center for Computational Quantum Physics Flatiron Institute 162 5th Avenue New YorkNY10010 United States Department of Physics Colorado School of Mines 1523 Illinois St GoldenCO80401 United States Department of Computer Science Colorado School of Mines 1500 Illinois St GoldenCO80401 United States Department of Physics and Astronomy College of Staten Island City University of New York Staten IslandNY10314 United States Physics program and Initiative for the Theoretical Sciences The Graduate Center City University of New York New YorkNY10016 United States
In this work, we introduce a new iterative quantum algorithm, called Iterative Symphonic Tunneling for Satisfiability problems (IST-SAT), which solves quantum spin glass optimization problems using high-frequency osci... 详细信息
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Discovery of dual-specificity tyrosine-phosphorylation-regulated kinase 1A (DYRK1A) inhibitors using an artificial intelligence model and their effects on tau and tubulin dynamics
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Biomedicine and Pharmacotherapy 2024年 181卷 117688-117688页
作者: Chen, Jun-Hong Tu, Huang-Ju Lin, Tony Eight Peng, Zhao-Xiang Wu, Yi-Wen Yen, Shih-Chung Sung, Tzu-Ying Hsieh, Jui-Hua Lee, Hsueh-Yun Pan, Shiow-Lin HuangFu, Wei-Chun Hsu, Kai-Cheng Graduate Institute of Cancer Biology and Drug Discovery College of Medical Science and Technology Taipei Medical University Taipei Taiwan Ph.D. Program for Cancer Molecular Biology and Drug Discovery College of Medical Science and Technology Taipei Medical University Taipei Taiwan Warshel Institute for Computational Biology The Chinese University of Hong Kong Guangdong Shenzhen China Division of Translational Toxicology National Institute of Environmental Health Sciences National Institutes of Health Durham NC United States School of Pharmacy College of Pharmacy Taipei Medical University Taipei Taiwan TMU Research Center of Cancer Translational Medicine Taipei Medical University Taipei Taiwan Cancer Center Wan Fang Hospital Taipei Medical University Taipei Taiwan
The dual-specificity tyrosine-phosphorylation-regulated kinase 1 A (DYRK1A) presents a promising therapeutic target for neurological diseases. However, current inhibitors lack selectivity, which can lead to unexpected... 详细信息
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GW190521 as a black-hole merger coincident with the ZTF19abanrhr flare
arXiv
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arXiv 2021年
作者: Bustillo, Juan Calderón Leong, Samson H.W. Chandra, Koustav McKernan, Barry Ford, K.E.S. Instituto Galego de Física de Altas Enerxías Universidade de Santiago de Compostela Galicia Santiago de Compostela15782 Spain Department of Physics The Chinese University of Hong Kong N.T. Shatin Hong Kong Department of Physics Indian Institute of Technology Bombay Powai Maharashtra Mumbai400076 India Department of Science CUNY-BMCC 199 Chambers St. New YorkNY10007 United States Department of Astrophysics American Museum of Natural History Central Park West New YorkNY10028 United States Physics Program The Graduate Center CUNY New YorkNY10016 United States Center for Computational Astrophysics Flatiron Institute New YorkNY10010 United States
We present an analysis that reconciles the gravitational wave signal GW190521 observed by the Advanced LIGO and Advanced Virgo detectors with the electromagnetic flare ZTF19abanrhr observed by the Zwicky Transient Fac... 详细信息
来源: 评论