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arXiv 2022年

作者： Jivanjee, Tasneem Ibrahim, Samira Nyquist, Sarah K. James Gatter, G. Bromley, Joshua D. Jaiswal, Swati Berger, Bonnie Behar, Samuel M. Christopher Love, J. Shalek, Alex K. Institute for Medical Engineering & Science Department of Chemistry Massachusetts Institute of Technology CambridgeMA United States Koch Institute for Integrative Cancer Research Massachusetts Institute of Technology CambridgeMA United States Ragon Institute of MGH MIT and Harvard CambridgeMA United States Broad Institute of MIT and Harvard CambridgeMA United States Massachusetts Institute of Technology CambridgeMA United States Program in Computational and Systems Biology Massachusetts Institute of Technology CambridgeMA United States Computer Science and Artificial Intelligence Laboratory Massachusetts Institute of Technology CambridgeMA United States Microbiology Graduate Program Massachusetts Institute of Technology CambridgeMA02139 United States Department of Microbiology and Physiological Systems University of Massachusetts Medical School WorcesterMA United States Department of Mathematics Massachusetts Institute of Technology CambridgeMA United States Department of Chemical Engineering Massachusetts Institute of Technology CambridgeMA United States

Antigen-specific T cells play an essential role in immunoregulation and many diseases such as cancer. Characterizing the T cell receptor (TCR) sequences that encode T cell specificity is critical for elucidating the antigenic determinants of immunological diseases and designing therapeutic remedies. However, methods of obtaining single-cell TCR sequencing data are labor and cost intensive, typically requiring both cell sorting and full length single-cell RNA-sequencing (scRNA-seq). New high-throughput 3' cell-barcoding scRNA-seq methods can simplify and scale this process;however, they do not routinely capture TCR sequences during library preparation and sequencing. While 5' cell-barcoding scRNA-seq methods can be used to examine TCR repertoire at single-cell resolution, doing so requires specialized reagents which cannot be applied to samples previously processed using 3' cell-barcoding methods. Here, we outline a method for sequencing TCRα and TCRβ transcripts from samples already processed using 3' cell-barcoding scRNA-seq platforms, ensuring TCR recovery at a single-cell resolution. In short, a fraction of the 3' barcoded whole transcriptome amplification (WTA) product typically used to generate a massively parallel 3' scRNA-seq library is enriched for TCR transcripts using biotinylated probes, and further amplified using the same universal primer sequence from WTA. Primer extension using TCR V-region primers and targeted PCR amplification using a second universal primer results in a 3' barcoded single-cell CDR3-enriched library that can be sequenced with custom sequencing primers. Coupled with 3' scRNA-seq of the same WTA, this method enables simultaneous analysis of single-cell transcriptomes and TCR sequences which can help interpret inherent heterogeneity among antigen-specific T cells and salient disease biology. The method presented here can also be adapted readily to enrich and sequence other transcripts of interest from both 3' and 5' barcoded scRNA-seq

关键词： RNA

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Determination of Giving 'Tips' Using Fuzzy Logic To Determine Restaurant Customer Service Satisfaction

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Journal of Physics: Conference Series 2021年第1期1830卷

作者： Dadang Priyanto Muhammad Zarlis Anthony Anggrawan Graduate Program Of Computer Science Department Of Computer Science Faculty Of Computer Science And Information Technology Universitas Sumatera Utara Medan Indonesia. Informatics Engineering Universitas Bumigora Mataram Indonesia Department of Computer Science Faculty of computer Science and Information Technology Universitas Sumatera Utara Medan Indonesia.

Fuzzy logic can be used to represent obscurity based on terms such as high, old, hot, cold, and so on. Fuzzy logic can extend the range of truth values to all real numbers in intervals between 0 and 1. Numbers in this interval represent the possibility that the statement given is 'true' or 'wrong'. The use of fuzzy logic can be used in everyday life, such as in the fields of medicine, engineering, agriculture, transportation, environmental science and also in economic and business applications. As in this study, it was used to calculate the ideal amount of 'tips' for restaurant waiters based on the service provided by restaurant waiters. The method used in this study is to use Mamdani fuzzy logic with the process of defuzzyfication using the Centroid of area (COA). The results of this study are that it can be determined the value crisp of giving tips to restaurant waiters is 45 thousand rupiah provided that the service provided for service = 7 (Excellent) and food service = 8 (Delicious)..

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Bulk-plasmon-mediated free-electron radiation beyond the conventional formation time

arXiv

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arXiv 2022年

作者： Tay, Fuyang Lin, Xiao Shi, Xihang Chen, Hongsheng Kaminer, Ido Zhang, Baile Interdisciplinary Center for Quantum Information State Key Laboratory of Modern Optical Instrumentation ZJUHangzhou Global Science and Technology Innovation Center College of Information Science and Electronic Engineering Zhejiang University Hangzhou310027 China Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States Applied Physics Graduate Program Smalley–Curl Institute Rice University HoustonTX77005 United States International Joint Innovation Center The Electromagnetics Academy Zhejiang University Zhejiang University Haining314400 China Department of Electrical Engineering Technion-Israel Institute of Technology Haifa32000 Israel Jinhua Institute of Zhejiang University Zhejiang University Jinhua321099 China Division of Physics and Applied Physics School of Physical and Mathematical Sciences Nanyang Technological University 637371 Singapore Centre for Disruptive Photonic Technologies Nanyang Technological University 637371 Singapore

Free-electron radiation is a fundamental photon emission process that is induced by fast-moving electrons interacting with optical media. Historically, it has been understood that, just like any other photon emission process, free-electron radiation must be constrained within a finite time interval known as the "formation time", whose concept is applicable to both Cherenkov radiation and transition radiation, the two basic mechanisms describing radiation from a bulk medium and from an interface, respectively. Here we reveal an alternative mechanism of free-electron radiation far beyond the previously defined formation time. It occurs when a fast electron crosses the interface between vacuum and a plasmonic medium supporting bulk plasmons. While emitted continuously from the crossing point on the interface — thus consistent with the features of transition radiation — the extra radiation beyond the conventional formation time is supported by a long tail of bulk plasmons following the electron’s trajectory deep into the plasmonic medium. Such a plasmonic tail mixes surface and bulk effects, and provides a sustained channel for electron-interface interaction. These results also settle the historical debate in Ferrell radiation, regarding whether it is a surface or bulk effect, from transition radiation or plasmonic oscillation. Copyright © 2022, The Authors. All rights reserved.

关键词： Plasmonics

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Galaxy clusters at z ∼ 1 imaged by ALMA with the Sunyaev–Zel’dovich effect

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Publications of the Astronomical Society of Japan 2023年第2期75卷 311-337页

作者： Kitayama, Tetsu Ueda, Shutaro Okabe, Nobuhiro Akahori, Takuya Hilton, Matt Hughes, John P. Ichinohe, Yuto Kohno, Kotaro Komatsu, Eiichiro Lin, Yen-Ting Miyatake, Hironao Oguri, Masamune Sifón, Cristóbal Takakuwa, Shigehisa Takizawa, Motokazu Tsutsumi, Takahiro van Marrewijk, Joshiwa Wollack, Edward J. Department of Physics Toho University 2-2-1 Miyama Chiba Funabashi274-8510 Japan No. 1 Section 4 Roosevelt Road Taipei10617 Taiwan Institute of Astronomy National Tsing Hua University Hsinchu30013 Taiwan Department of Physics Hiroshima University 1-3-1 Kagamiyama Higashi-Hiroshima Hiroshima739-8526 Japan Astrophysical Science Center Hiroshima University 1-3-1 Kagamiyama Higashi-Hiroshima Hiroshima739-8526 Japan Core Research for Energetic Universe Department of Physics Hiroshima University 1-3-1 Kagamiyama Higashi-Hiroshima Hiroshima739-8526 Japan Physics Program Graduate School of Advanced Science and Engineering Hiroshima University 1-3-1 Kagamiyama Higashi-Hiroshima Hiroshima739-8526 Japan Mizusawa VLBI observatory National Astronomical Observatory of Japan 2-21-1 Osawa Mitaka Tokyo181-8588 Japan Operation Division SKA Observatory Jodrell Bank Lower Withington MacclesfieldSK11 9DL United Kingdom Astrophysics Research Centre University of KwaZulu-Natal Westville Campus Durban4041 South Africa School of Mathematics Statistics & Computer Science University of KwaZulu-Natal Westville Campus Durban4041 South Africa Wits Centre for Astrophysics School of Physics University of the Witwatersrand Private Bag 3 Johannesburg2050 South Africa Department of Physics and Astronomy Rutgers The State University of New Jersey PiscatawayNJ08854-8019 United States Department of Physics Rikkyo University 3-34-1 Nishi-Ikebukuro Toshima-ku Tokyo171-8501 Japan Institute of Astronomy School of Science The University of Tokyo 2-21-1 Osawa Mitaka Tokyo181-0015 Japan Research Center for the Early Universe School of Science The University of Tokyo 7-3-1 Hongo Bunkyo Tokyo113-0033 Japan Max-Planck-Institut für Astrophysik Karl-Schwarzschild Str. 1 GarchingD-85741 Germany The University of Tokyo Institutes for Advanced Study The University of Tokyo 5-1-5 Kashiwanoha Chiba Kashiwa277-8583 Japan Nagoya University Furo-cho Chikusa-

We present high angular resolution measurements of the thermal Sunyaev–Zel’dovich effect (SZE) toward two galaxy clusters, RCS J2319+0038 at z = 0.9 and HSC J0947−0119 at z = 1.1, by the Atacama Large Millimeter/submillimeter Array (ALMA) in Band 3. They are supplemented with available Chandra X-ray data, optical data taken by Hyper Suprime-Cam on Subaru, and millimeter-wave SZE data from the Atacama Cosmology Telescope. Taking into account departures from spherical symmetry, we have reconstructed non-parametrically the inner pressure profile of two clusters as well as electron temperature and density profiles for RCS J2319+0038. This is one of the first such measurements for an individual cluster at z 0.9. We find that the inner pressure profile of both clusters is much shallower than that of local cool-core clusters. Our results consistently suggest that RCS J2319+0038 hosts a weak cool core, where radiative cooling is less significant than in local cool cores. On the other hand, HSC J0947−0119 exhibits an even shallower pressure profile than RCS J2319+0038 and is more likely to be a non-cool-core cluster. The SZE centroid position is offset by more than 140 h−170 kpc from the peaks of galaxy distribution in HSC J0947−0119, suggesting a stronger influence of mergers in this cluster. We conclude that these distant clusters are at a very early stage of developing the cool cores typically found in clusters at lower redshifts. © The Author(s) 2023. Published by Oxford University Press on behalf of the Astronomical Society of Japan.

关键词： Millimeter waves

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Persistent flat band splitting and strong selective band renormalization in a kagome magnet thin film

arXiv

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arXiv 2024年

作者： Ren, Zheng Huang, Jianwei Tan, Hengxin Biswas, Ananya Pulkkinen, Aki Zhang, Yichen Xie, Yaofeng Yue, Ziqin Chen, Lei Xie, Fang Allen, Kevin Wu, Han Ren, Qirui Rajapitamahuni, Anil Kundu, Asish K. Vescovo, Elio Kono, Junichiro Morosan, Emilia Dai, Pengcheng Zhu, Jian-Xin Si, Qimiao Minár, Ján Yan, Binghai Yi, Ming Department of Physics and Astronomy Rice University HoustonTX77005 United States Department of Condensed Matter Physics Weizmann Institute of Science Rehovot Israel New Technologies-Research Center University of West Bohemia Plzeň301 00 Czech Republic Applied Physics Graduate Program Smalley-Curl Institute Rice University HoustonTX77005 United States National Synchrotron Light Source II Brookhaven National Lab UptonNY United States Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States Department of Materials Science and NanoEngineering Rice University HoustonTX77005 United States Smalley-Curl Institute Rice University HoustonTX77005 United States Department of Chemistry Rice University HoustonTX77005 United States Theoretical Division Center for Integrated Nanotechnologies Los Alamos National Laboratory Los AlamosNM United States

Magnetic kagome materials provide a fascinating playground for exploring the interplay of magnetism, correlation and topology. Many magnetic kagome systems have been reported including the binary FemXn (X=Sn, Ge;m:n = 3:1, 3:2, 1:1) family and the rare earth RMn6Sn6 (R = rare earth) family, where their kagome flat bands are calculated to be near the Fermi level in the paramagnetic phase. While partially filling a kagome flat band is predicted to give rise to a Stoner-type ferromagnetism, experimental visualization of the magnetic splitting across the ordering temperature has not been reported for any of these systems due to the high ordering temperatures, hence leaving the nature of magnetism in kagome magnets an open question. Here, we probe the electronic structure with angle-resolved photoemission spectroscopy in a kagome magnet thin film FeSn synthesized using molecular beam epitaxy. We identify the exchange-split kagome flat bands, whose splitting persists above the magnetic ordering temperature, indicative of a local moment picture. Such local moments in the presence of the topological flat band are consistent with the compact molecular orbitals predicted in theory. We further observe a large spin-orbital selective band renormalization in the Fe dxy+dx2-y2spin majority channel reminiscent of the orbital selective correlation effects in the iron-based superconductors. Our discovery of the coexistence of local moments with topological flat bands in a kagome system echoes similar findings in magic-angle twisted bilayer graphene, and provides a basis for theoretical effort towards modeling correlation effects in magnetic flat band systems. © 2024, CC BY.

关键词： Iron-based Superconductors

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Parity-time Symmetry Based on Time Modulation

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Physical Review Applied 2020年第3期14卷 031002-031002页

作者： Huanan Li Hady Moussa Dimitrios Sounas Andrea Alù Photonics Initiative Advanced Science Research Center City University of New York New York New York 10031 USA Department of Electrical Engineering City College of The City University of New York New York 10031 USA Department of Electrical and Computer Engineering Wayne State University Detroit Michigan 48202 USA Physics Program Graduate Center City University of New York New York New York 10016 USA

We leverage aperiodic temporal modulations and nonreciprocity to realize PT-symmetric phenomena without the need for gain and loss provided by external mechanisms. We develop our approach using a general coupled-mode framework, and verify our results via detailed simulations in a conservative electronic circuit, demonstrating wave phenomena such as scattering PT-phase transition and anisotropic transmission resonances in a Hermitian system. Our concept opens the possibility of implementing PT-symmetric phenomena without gain, with applications in sensing, communications, and a broad range of quantum physics.

关键词： Symmetry protected topological states Coupled oscillators Metamaterials PT-symmetry Cavity resonators Coupled mode theory S-matrix method in transport

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Hierarchical modeling of nano-oscillator systems 16

Hierarchical modeling of nano-oscillator systems

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16th International Workshop on Cellular Nanoscale Networks and Their Applications, CNNA 2018

作者： Hull, Zachary Chiarulli, Donald Computer Engineering Graduate Program University of Pittsburgh PittsburghPA15261 United States Electrical and Computer Engineering University of Pittsburgh PittsburghPA15261 United States

ISBN: (纸本)9783800747665

This paper describes our effort to build a set of models for nano-oscillator systems that is compatible with modern EDA design tools. We have implemented a set of hierarchical models that spans an abstraction hierarchy patterned after CMOS design and includes device, circuit and system level models. The device models are based on empirical data sampled from hardware and the circuit and system models were verified against SPICE, MATLAB and C++. To date, we have built models for Spin Torque Oscillator (STO) based systems and Vanadium Dioxide (VO2) devices based on relaxation oscillator clusters. For space limitations, the examples shown here are based on the VO2 case. © VDE VERLAG GMBH.

关键词： Vanadium dioxide

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Author Correction: Generation of accurate, expandable phylogenomic trees with uDance

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Nature biotechnology 2024年第5期42卷 814页

作者： Metin Balaban Yueyu Jiang Qiyun Zhu Daniel McDonald Rob Knight Siavash Mirarab Bioinformatics and Systems Biology Graduate Program University of California San Diego La Jolla CA USA. Department of Electrical and Computer Engineering University of California San Diego La Jolla CA USA. Biodesign Center for Fundamental and Applied Microbiomics Arizona State University Tempe AZ USA. School of Life Sciences Arizona State University Tempe AZ USA. Department of Pediatrics University of California San Diego La Jolla CA USA. Department of Computer Science and Engineering Jacobs School of Engineering University of California San Diego La Jolla CA USA. Department of Bioengineering University of California San Diego La Jolla CA USA. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. Department of Electrical and Computer Engineering University of California San Diego La Jolla CA USA. smirarab@ucsd.edu. Department of Computer Science and Engineering Jacobs School of Engineering University of California San Diego La Jolla CA USA. smirarab@ucsd.edu. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. smirarab@ucsd.edu.

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Fluctuating risk of acute kidney injury-related mortality for four weeks after exposure to air pollution: A multi-country time-series study in 6 countries

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Environment International 2024年 183卷 108367页

作者： Min, Jieun Kang, Duk-Hee Kang, Cinoo Bell, Michelle L. Kim, Ho Yang, Juyeon Gasparrini, Antonio Lavigne, Eric Hashizume, Masahiro Kim, Yoonhee Fook Sheng Ng, Chris Honda, Yasushi das Neves Pereira da Silva, Susana Madureira, Joana Leon Guo, Yue Pan, Shih-Chun Armstrong, Ben Sera, Francesco Masselot, Pierre Schwartz, Joel Maria Vicedo-Cabrera, Ana Pyo Lee, Jung Al-Aly, Ziyad Won Lee, Jung Kwag, Youngrin Ha, Eunhee Lee, Whanhee Department of Environmental Medicine College of Medicine Ewha Womans University Seoul Korea Republic of Graduate Program in System Health Science and Engineering College of Medicine Ewha Womans University Seoul Korea Republic of Division of Nephrology Department of Internal Medicine Ewha Womans University School of Medicine Ewha Medical Research Center Seoul Korea Republic of Department of Public Health Sciences Graduate School of Public Health Seoul National University Seoul Korea Republic of Yale School of the Environment Yale University New HavenCT United States Biostatistics Collaboration Unit Yonsei University College of Medicine Seoul Korea Republic of Lab Department of Public Health Environments and Society London School of Hygiene & Tropical Medicine London United Kingdom School of Epidemiology & Public Health Faculty of Medicine University of Ottawa Ottawa Canada Department of Global Health Policy Graduate School of Medicine The University of Tokyo Tokyo Japan Department of Global Environmental Health Graduate School of Medicine University of Tokyo Tokyo Japan School of Tropical Medicine and Global Health Nagasaki University Nagasaki Japan Center for Climate Change Adaptation National Institute for Environmental Studies Tsukuba Japan Department of Epidemiology Instituto Nacional de Saúde Dr. Ricardo Jorge Lisbon Portugal EPIUnit-Institute of Public Health University of Porto Porto Portugal Porto Portugal College of Medicine and NTU Hospital Taipei Taiwan National Institute of Environmental Health Science National Health Research Institutes Zhunan Taiwan Department of Public Health Environments and Society London School of Hygiene & Tropical Medicine London United Kingdom Department of Statistics Computer Science and Applications "G. Parenti" University of Florence Florence Italy Department of Environmental Health Harvard T.H. Chan School of Public Health BostonMA United States Institute of Social and Preventive Medicine Universi

Background: Recent studies have reported that air pollution is related to kidney diseases. However, the global evidence on the risk of death from acute kidney injury (AKI) owing to air pollution is limited. Therefore, we investigated the association between short-term exposure to air pollution—particulate matter ≤ 2.5 μm (PM2.5), ozone (O3), and nitrogen dioxide (NO2)—and AKI-related mortality using a multi-country dataset. Methods: This study included 41,379 AKI-related deaths in 136 locations in six countries during 1987–2018. A novel case time-series design was applied to each air pollutant during 0–28 lag days to estimate the association between air pollution and AKI-related deaths. Moreover, we calculated AKI deaths attributable to non-compliance with the World Health Organization (WHO) air quality guidelines. Results: The relative risks (95% confidence interval) of AKI-related deaths are 1.052 (1.003, 1.103), 1.022 (0.994, 1.050), and 1.022 (0.982, 1.063) for 5, 10, and 10 µg/m3 increase in lag 0–28 days of PM2.5, warm-season O3, and NO2, respectively. The lag-distributed association showed that the risk appeared immediately on the day of exposure to air pollution, gradually decreased, and then increased again reaching the peak approximately 20 days after exposure to PM2.5 and O3. We also found that 1.9%, 6.3%, and 5.2% of AKI deaths were attributed to PM2.5, warm-season O3, and NO2 concentrations above the WHO guidelines. Conclusions: This study provides evidence that public health policies to reduce air pollution may alleviate the burden of death from AKI and suggests the need to investigate the several pathways between air pollution and AKI death. © 2023 The Author(s)

关键词： Air quality

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Response to "Comment on 'A novel two-dimensional boron-carbon-nitride (BCN) monolayer: A first-principles insight [J. Appl. Phys. 2021, 130, 114301]'"

arXiv

引用

arXiv 2022年

作者： Bafekry, Asadollah Naseri, Mosayeb Fadlallah, Mohamed M. Sarsari, Ismaeil Abdolhosseini Faraji, Mehrdad Khatibani, Abbas bagheri Ghergherehchi, Mitra Gogova, Daniela Department of Radiation Application Shahid Beheshti University Tehran*** Iran Department of Physics Kermanshah Branch Islamic Azad University Kermanshah*** Iran Department of Physics Faculty of Science Benha University Benha13518 Egypt Department of Physics Isfahan University of Technology Isfahan84156-83111 Iran Micro and Nanotechnology Graduate Program TOBB University of Economics and Technology Sogutozu Caddesi No 43 Sogutozu Ankara06560 Turkey Nano Research Lab Lahijan Branch Islamic Azad University Lahijan1616 Iran Department of Electrical and Computer Engineering Sungkyunkwan University Suwon16419 Korea Republic of Department of Physics Chemistry and Biology Linkoping University Linköping581 83 Sweden

Mortazavi et al. comment on the results of our paper "A novel two-dimensional boron-carbon-nitride BCN monolayer: A First-principles insight," in which we have considered different configurations of BCN. For clarification, we applied the fingerprint theory [1-3] to examine the similarity between the distinct structures. The fingerprint function is a crystal structure descriptor, an 1D-function related to the pair correlation function and diffraction patterns. It does not depend on absolute atomic coordinates, but only on interatomic distances. Small deviations in atomic positions will influence the fingerprints only slightly [1-3]. Fingerprint theory allows quantification of the degree of order and complexity of a crystal structure. © 2022, CC BY.

关键词： Monolayers

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