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20th Pacific Rim International Conference on Artificial Intelligence, PRICAI 2023

作者： Peng, Tao Zhang, Yaogong Dong, Yan Ruan, Yiwen Jin, Rui Liu, Zhaorui Wu, Hongzhuang Shen, Yuling Zhang, Lei School of Future Science and Engineering Soochow University Suzhou China Medical Physics Graduate Program and Data Science Research Center Duke Kunshan University Jiangsu Kunshan China Department of Ultrasonography The First Affiliated Hospital of Soochow University Suzhou China

ISBN: (纸本)9789819970247

The management of prostate cancer, a prevalent source of mortality in men, calls for meticulous delineation of the prostate in transrectal ultrasound (TRUS) images for effective treatment planning. This paper introduces a hybrid artificial intelligence approach for prostate delineation, leveraging prior information from experts, a machine learning model, and a quantum-inspired evolutionary network to augment the accuracy of prostate segmentation. The approach incorporates three novel elements: 1) limited prior information from expert and adaptive polygon tracking (APT) module for initial segmentation;2) a novel historical storage-based quantum-inspired evolutionary network (HQIE) mechanism to search for the optimal neural network and enhancing solution diversity and capacity to address unimodal and multimodal challenges, and 3) a unique mathematical formulation denoted by parameters of the neural network is used to achieve smooth prostate periphery. The method was evaluated across various noise conditions and against several state-of-the-art methods using a multi-center dataset. In addition, an ablation study was performed to evaluate the efficacy of each component. The results demonstrated the superior performance of the hybrid AI method (Dice index: 96.4 ± 2.4%) against state-of-the-art deep learning methods (e.g., UTNet, Dice index: 90.1 ± 5.7%). The hybrid method also showed higher robustness to image noise than traditional methods. This study suggests new insights and technical approaches in the field of prostate segmentation using hybrid artificial intelligence methods. © The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd 2024.

关键词： Ultrasonics

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Aggregating Structural Features for Computational Analysis of Mutations in BRCT Domains of BRCA1 Protein

Aggregating Structural Features for Computational Analysis o...

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2023 International Conference on Informatics, Multimedia, Cyber and Information Systems, ICIMCIS 2023

作者： Hidayat, Alam Ahmad Nirwantono, Rudi Isnan, Mahmud Trinugroho, Joko Pebrianto Pardamean, Bens Bina Nusantara University School of Computer Science Bioinformatics and Data Science Research Center Mathematics Department Jakarta11480 Indonesia Bina Nusantara University Faculty of Engineering Bioinformatics and Data Science Research Center Biotechnology Department Jakarta11480 Indonesia Bina Nusantara University Bioinformatics and Data Science Research Center Jakarta11480 Indonesia Binus Graduate Program Bioinformatics and Data Science Research Center Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9798350307306

Understanding the mechanistic interpretability of mutation effects in a protein can help predict the clinical implications of the genetic variants. Hence, computational variant effect predictions that involve protein structural features of the protein mutations might be suitable in this case. In this work, we focus on BRCT domains of BRCA1 gene that is widely studied in breast cancer studies. We retrieved 88 selected missense variants found in BRCT domains annotated in both ClinVar and gnomAD databases. To computationally characterize the pathogenic property of the mutations we used two types of features extracted from protein structures: a change in free Gibbs energy and a set of features derived from molecular dynamics simulations of each mutant. Using a dimensional reduction and Gaussian mixture model (GMM)-based clustering we demonstrate that the variants are segregated into two regions that may correspond to their pathogenic status. This method can be a potential computational pipeline for providing the preliminary mechanistic interpretation of mutation effects in terms of their thermodynamic and structural features. © 2023 IEEE.

关键词： Proteins

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Machine Learning Approaches in Detecting Autism Spectrum Disorder 8

Machine Learning Approaches in Detecting Autism Spectrum Dis...

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8th International Conference on Computer science and Computational Intelligence, ICCSCI 2023

作者： Daniel Dominic, Nicholas Cenggoro, Tjeng Wawan Pardamean, Bens Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta11480 Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta11480 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia

Early detection of Autism Spectrum Disorder (ASD) needs to be increased to prevent further adverse impacts. Thus, the classification between ASD and Typically Development (TD) individuals is an intriguing task. This review study has collected 26 related papers to answer four research questions, i.e., what are the most used data inputs, brain atlases, and machine learning models for ASD classification, as also to discover the significant parts of the brain correlated with the ASD. It was eventually found that functional connectivity matrix, Support Vector Machine, and CC200 are the most frequently used data input, model, and brain atlas, respectively. Researchers also concluded that the posterior temporal fusiform cortex, intracalcarine cortex, cuneal cortex, subcallosal cortex, occipital pole, and lateral occipital cortex are the brain regions highly correlated with ASD. © 2023 The Authors. Published by Elsevier B.V.

关键词： autism spectrum disorder brain atlas brain region machine learning

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Sentiment Analysis for TikTok Review Using VADER Sentiment and SVM Model 8

Sentiment Analysis for TikTok Review Using VADER Sentiment a...

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8th International Conference on Computer science and Computational Intelligence, ICCSCI 2023

作者： Isnan, Mahmud Elwirehardja, Gregorius Natanael Pardamean, Bens Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta11480 Indonesia Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta11480 Indonesia

TikTok, a social networking site for uploading short videos, has become one of the most popular. Despite this, not all users are happy with the app;there are criticisms and suggestions, one of which is reviewed via the TikTok app on the Google Play Store. The reviews were extracted and then used for training a sentiment analysis model. The VADER sentiment method was utilized to offer the review's initial labeling (positive, neutral, and negative). The result revealed that most reviews were classified as positive, meaning that the data were imbalanced and challenging to handle in further analysis. Therefore, Random Under-sampling (RUS) and Random Over-sampling (ROS) methods were deployed to deal with that condition. The labeled reviews were subsequently pre-processed using tools such as case folding, noise removal, normalization, and stopwords before being used for training a Support Vector Machine (SVM) model for sentiment classification. The SVM trained without resampling produced the most favorable results, with an F1-score of 0.80. © 2023 The Authors. Published by Elsevier B.V.

关键词： Google Play Store Sentiment Analysis SVM TikTok VADER Sentiment

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Comparison of K-Nearest Neighbor and Support Vector Regression for Predicting Oil Palm Yield 1

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International Conference on Innovative Technologies in Intelligent Systems and Industrial Applications, CITISIA 2022

作者： Pardamean, Bens Suparyanto, Teddy Sinaga, Gokma Sahat Tua Elwirehardja, Gregorius Natanael Firmansyah, Erick Ginting, Candra Mawandha, Hangger Gahara Putra, Dian Pratama Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Computer Science Department BINUS Graduate Program—Master of Computer Science Program Bina Nusantara University Jakarta11480 Indonesia Faculty of Agriculture Institute of Agriculture STIPER Yogyakarta55282 Indonesia

ISBN: (数字)9783031290787

ISBN: (纸本)9783031290770

With the high demand for oil palm production, implementations of Machine Learning (ML) technologies to provide accurate predictions and recommendations to assist oil palm plantation management tasks have become beneficial, such as in predicting annual oil palm. However, different geographical and meteorological conditions may result in different scales of influence for each variable. In this research, K-Nearest Neighbors (KNN) and Support Vector Regression (SVR) were used in predicting oil palm yield based on data collected in Riau, Indonesia. Pearson’s correlation coefficient was also calculated in selecting the input features for the models, whereas normalization and standardization were used in scaling the data. By setting the minimum absolute correlation threshold to 0.1 and using standardization, both models managed to obtain more than 0.81 R2, with SVR obtaining the overall best performance with 0.8709 R2, 1.372 MAE, and 1.8025 RMSE without hyperparameter fine-tuning. It was also discovered that the oil palm yield in the previous year is the variable with the most influence in estimating oil palm yield in the current year, followed by the number of plants and soil types. © The Author(s), under exclusive license to Springer Nature Switzerland AG 2023.

关键词： Machine learning

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Machine learning of organic solvents reveals an extraordinary axis in Hansen space as indicator of spherical precipitation of polymers

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Aggregate 2023年第5期4卷 207-213页

作者： Yuta Ihara Hiroshi Yamagishi Masanobu Naito Yohei Yamamoto Department of Materials Science Faculty of Pure and Applied Sciencesand Tsukuba Research Center for Energy Materials Science(TREMS)University of TsukubaTsukubaJapan Research and Services Division of Materials Data and Integrated System(MaDIS) National Institute for Materials Science(NIMS)TsukubaJapan Program in Materials Science and Engineering Graduate School of Pure and Applied SciencesUniversity of TsukubaTsukubaJapan

Machine learning is an emerging tool in the field of materials chemistry for uncovering a principle from large ***,we focus on the spherical precipitation behavior of polymers and computationally extract a hidden trend that is orthogonal to the availability bias in the chemical *** constructing a dataset,four polymers were precipitated from 416 solvent/nonsolvent combinations,and the morphology of the resulting precipitates were *** dataset was subjected to computational investigations consisting of principal component analysis and machine learning based on random forest model and support vector ***,we eliminated the effect of the availability bias and found a linear combination of Hansen parameters to be the most suitable variable for predicting precipitation *** predicted appropriate solvents are those with low hydrogen bonding capability,low polarity,and small molecular ***,we found that the capability for spherical precipitation is orthogonal to the availability bias and forms an extraordinary axis in Hansen space,which is the origin of the conventional difficulty in identifying the *** extraordinary axis points toward a void region,indicating the potential value of synthesizing novel solvents located therein.

关键词： chemical space computational chemistry machine learning polymers precipitation

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Count-data Mixed Models of Topical Tweets: A Case of Indonesia Flood Events 8

Count-Data Mixed Models of Topical Tweets: A Case of Indones...

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8th International Conference on Computer science and Computational Intelligence, ICCSCI 2023

作者： Hidayat, Alam Ahmad Pardamean, Bens Mathematics Department School of Computer Science Bina Nusantara University Jakarta11480 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta11480 Indonesia

Examining topic-level variability in modeling Twitter data can potentially yield more comprehensive insights into public perception during critical periods, thereby enhancing natural disaster mitigation and surveillance efforts. In this study, we utilized generalized linear mixed models (GLMMs) to illustrate the variability in tweet counts related to specific topics in Indonesia during the flood events that occurred in February 2021. The glmmTMB library in R was employed for this purpose. The data were assumed to follow two distinct exponential distributions: Poisson and Negative Binomial. To incorporate random effects, random intercepts and random slopes were introduced, allowing them to vary randomly across topics in the initial two models. Additionally, the final model addressed issues related to dispersion and zero-inflation. By evaluating the Akaike Information Criteria scores, we determined that a model based on the Negative Binomial distribution with random zero-inflation intercepts best fit the data. The chosen model formulation and the estimated parameters have the potential to forecast topic-specific trends in Indonesian flood-related Twitter data. © 2023 The Authors. Published by Elsevier B.V.

关键词： count data disaster surveillance floods mixed models Twitter

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Indonesian Agricultural-crops Classification Using Transfer Learning Model 8

Indonesian Agricultural-crops Classification Using Transfer ...

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8th International Conference on Computer science and Computational Intelligence, ICCSCI 2023

作者： Isnan, Mahmud Hidayat, Alam Ahmad Pardamean, Bens Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Department of Mathematics School of Computer Science Bina Nusantara University Jakarta11480 Indonesia Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta11480 Indonesia

Classification of Indonesian crops is a critical task in developing farming and getting more understanding of agriculture. However, there is no clear task in classifying types of crops in Indonesia. Transfer learning has been used successfully in a variety of image classification applications. Thus, in this paper, we collected images of Indonesian crops from the internet randomly and proposed a classification by using transfer learning of deep learning with four pre-trained models: EffficientNetB0, ResNet18, VGG19, and AlexNet. In the experiment, augmentation techniques such as random horizontal flip, random vertical flip, and random affine were utilized to prevent the network from overfitting. The result found that EfficientNet-B0 outperformed other models with an accuracy of 82.55. Then, the model struggled to distinguish between crops in the same family. According to the results, although transfer learning can work well to classify images of Indonesian agricultural crops, some improvements are still required to address existing issues. © 2023 The Authors. Published by Elsevier B.V.

关键词： Agriculture Classification Crop Deep Learning Transfer learning

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Toward Learning Factory for Industry 4.0: Virtual Reality (VR) for Learning Human–Robot Collaboration 1

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International Conference on Innovative Technologies in Intelligent Systems and Industrial Applications, CITISIA 2022

作者： Ariansyah, Dedy Colombo, Giorgio Pardamean, Bens Bioinformatics and Data Science Research Centre Bina Nusantara University Jakarta11480 Indonesia Department of Mechanical Engineering Politecnico di Milano Milan20156 Italy Computer Science Department BINUS Graduate Program Master of Computer Science Program Bina Nusantara University Jakarta11480 Indonesia

ISBN: (数字)9783031290787

ISBN: (纸本)9783031290770

Industry 4.0 will bring not only transformation to the manufacturing technologies but also to the profile of the workforce. Education system should be revised to prepare the future graduates embracing the knowledge of the ongoing revolution. Initiatives on the modification of curriculum and tools to deliver the concepts of Industry 4.0 must be taken. This paper examines limitations of current engineering tools and proposes a virtual reality (VR)-based learning platform to support the teaching and learning activity for Industry 4.0, focusing on the design of Human–robot Collaboration (HRC). The development process began with the identification of the general Intended Learning Outcomes (ILOs) which were extracted from the review of the HRC design issues, followed by the evaluation of the current teaching tool. From these results, the new requirements of the tools to achieve ILOs are redefined. The implementation of the system is demonstrated to show the feasibility of the proposed learning platform. This workflow can serve as initial development of another learning platform for the other innovative concepts that form the building blocks of Industry 4.0. © The Author(s), under exclusive license to Springer Nature Switzerland AG 2023.

关键词： Industry 4.0

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Variational quantum neural network with optimized ansatz for predicting malignant ventricular arrhythmias

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Procedia Computer science 2024年 245卷 109-116页

作者： Nicholas Dominic Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta 11480 Indonesia Computer Science Department BINUS Graduate Program – Master of Computer Science Program Bina Nusantara University Jakarta 11480 Indonesia

Preventive strategies should be the utmost priority when dealing with diverse patients suffering from malignant ventricular arrhythmia (MVA) that can lead to sudden cardiac death (SCD). Electrocardiogram (ECG) data is commonly used as a predictor for MVA predictive models. In this study, all ECG signals from MIT-BIH databases were fragmented into five-minute durations with a frequency sampling of 128 Hz. To solve the absence of hybrid optimizations in Machine Learning (ML) models, a novel Variational Quantum Neural Network (VQNN) was invented. Empowered by deep learning capabilities and optimized quantum circuits design, VQNN achieved remarkable performances designated by an accuracy of up to 95.1%, a perfect 100% recall, and a 95.2% score of the area under the Receiver Operating Characteristic curve (AUC ROC) with Conjugate Gradient as an optimizer and EfficientSU2 as a quantum ansatz. Despite the susceptibility to quantum noise, this research settles a new trajectory of utilizing quantum variational algorithms to predict and expand its applicability for MVA cases.

关键词： Malignant Ventricular Arrhythmia Sudden Cardiac Death Variational Quantum Algorithm Quantum Computing Neural Network

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