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Expression of concern: Microchip-based structure determination of low-molecular weight proteins using cryo-electron microscopy

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Nanoscale 2024年第9期16卷 4919页

作者： Michael A Casasanta G M Jonaid Liam Kaylor William Y Luqiu Maria J Solares Mariah L Schroen William J Dearnaley Jarad Wilson Madeline J Dukes Deborah F Kelly Department of Biomedical Engineering Pennsylvania State University University Park PA 16802 USA. Debkelly@psu.edu. Materials Research Institute Pennsylvania State University University Park PA 16802 USA. Bioinformatics and Genomics Graduate Program Huck Institutes of the Life Sciences Pennsylvania State University University Park PA 16802 USA. Molecular Cellular and Integrative Biosciences Graduate Program Huck Institutes of the Life Sciences Pennsylvania State University University Park PA 16802 USA. Department of Electrical and Computer Engineering Duke University Durham NC 27708 USA. RayBiotech Life Peachtree Corners GA 30092 USA. Applications Science Protochips Inc. Morrisville NC 27560 USA.

Expression of concern for 'Microchip-based structure determination of low-molecular weight proteins using cryo-electron microscopy' by Michael A. Casasanta , , 2021, , 7285-7293, https://***/10.1039/D1NR00388G.

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Magnetic Control of Soft Chiral Phonons in PbTe

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Physical Review Letters 2022年第7期128卷 075901-075901页

作者： Andrey Baydin Felix G. G. Hernandez Martin Rodriguez-Vega Anderson K. Okazaki Fuyang Tay G. Timothy Noe, II Ikufumi Katayama Jun Takeda Hiroyuki Nojiri Paulo H. O. Rappl Eduardo Abramof Gregory A. Fiete Junichiro Kono Department of Electrical and Computer Engineering Rice University Houston Texas 77005 USA Smalley-Curl Institute Rice University Houston Texas 77005 USA Instituto de Física Universidade de São Paulo São Paulo São Paulo 05508-090 Brazil Theoretical Division Los Alamos National Laboratory Los Alamos New Mexico 87545 USA Laboratório Associado de Sensores e Materiais Instituto Nacional de Pesquisas Espaciais São José dos Campos São Paulo 12201-970 Brazil Applied Physics Graduate Program Smalley-Curl Institute Rice University Houston Texas 77005 USA Department of Physics Graduate School of Engineering Science Yokohama National University Yokohama 240-8501 Japan Institute for Materials Research Tohoku University Sendai 980-8577 Japan Department of Physics Northeastern University Boston Massachusetts 02115 USA Department of Physics Massachusetts Institute of Technology Cambridge Massachusetts 02139 USA Department of Physics and Astronomy Rice University Houston Texas 77005 USA Department of Material Science and NanoEngineering Rice University Houston Texas 77005 USA

PbTe crystals have a soft transverse optical phonon mode in the terahertz frequency range, which is known to efficiently decay into heat-carrying acoustic phonons, resulting in anomalously low thermal conductivity. Here, we studied this phonon via polarization-dependent terahertz spectroscopy. We observed softening of this mode with decreasing temperature, indicative of incipient ferroelectricity, which we explain through a model including strong anharmonicity with a quartic displacement term. In magnetic fields up to 25 T, the phonon mode splits into two modes with opposite handedness, exhibiting circular dichroism. Their frequencies display Zeeman splitting together with an overall diamagnetic shift with increasing magnetic field. Using a group-theoretical approach, we demonstrate that these observations are the result of magnetic field-induced morphic changes in the crystal symmetries through the Lorentz force exerted on the lattice ions. Thus, our Letter reveals a novel process of controlling phonon properties in a soft ionic lattice by a strong magnetic field.

关键词： Chirality Diamagnetism Magneto-dielectric effect Optical phonons Thermal conductivity Zeeman effect Terahertz time-domain spectroscopy

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Deep Learning-Derived Optimal Aviation Strategies to Control Pandemics

arXiv

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arXiv 2022年

作者： Rizvi, Syed Awasthi, Akash Peláez, Maria J. Wang, Zhihui Cristini, Vittorio Van Nguyen, Hien Dogra, Prashant Department of Electrical and Computer Engineering University of Houston HoustonTX77004 United States Mathematics in Medicine Program Department of Medicine Houston Methodist Research Institute HoustonTX77030 United States Department of Physiology and Biophysics Weill Cornell Medical College New YorkNY10065 United States Neal Cancer Center Houston Methodist Research Institute HoustonTX77030 United States Department of Imaging Physics The University of Texas M.D. Anderson Cancer Center HoustonTX77230 United States Physiology Biophysics and Systems Biology Program Graduate School of Medical Sciences Weill Cornell Medicine New YorkNY10065 United States Research in Physiology and Biophysics Department of Physiology and Biophysics Weill Cornell Medical College New YorkNY United States

The COVID-19 pandemic has affected countries across the world, demanding drastic public health policies to mitigate the spread of infection, leading to economic crisis as a collateral damage. In this work, we investigated the impact of human mobility (described via international commercial flights) on COVID-19 infection dynamics at the global scale. For this, we developed a graph neural network-based framework referred to as Dynamic Connectivity GraphSAGE (DCSAGE), which operates over spatiotemporal graphs and is well-suited for dynamically changing adjacency information. To obtain insights on the relative impact of different geographical locations, due to their associated air traffic, on the evolution of the pandemic, we conducted local sensitivity analysis on our model through node perturbation experiments. From our analyses, we identified Western Europe, North America, and Middle East as the leading geographical locations fueling the pandemic, attributed to the enormity of air traffic originating or transiting through these regions. We used these observations to identify tangible air traffic reduction strategies that can have a high impact on controlling the pandemic, with minimal interference to human mobility. Our work provides a robust deep learning-based tool to study global pandemics and is of key relevance to policy makers to take informed decisions regarding air traffic restrictions during future outbreaks. © 2022, CC BY-NC-SA.

关键词： COVID-19

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Response to "Comment on 'A novel two-dimensional boron-carbon-nitride (BCN) monolayer: A first-principles insight [J. Appl. Phys. 2021, 130, 114301]'"

arXiv

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arXiv 2022年

作者： Bafekry, Asadollah Naseri, Mosayeb Fadlallah, Mohamed M. Sarsari, Ismaeil Abdolhosseini Faraji, Mehrdad Khatibani, Abbas bagheri Ghergherehchi, Mitra Gogova, Daniela Department of Radiation Application Shahid Beheshti University Tehran*** Iran Department of Physics Kermanshah Branch Islamic Azad University Kermanshah*** Iran Department of Physics Faculty of Science Benha University Benha13518 Egypt Department of Physics Isfahan University of Technology Isfahan84156-83111 Iran Micro and Nanotechnology Graduate Program TOBB University of Economics and Technology Sogutozu Caddesi No 43 Sogutozu Ankara06560 Turkey Nano Research Lab Lahijan Branch Islamic Azad University Lahijan1616 Iran Department of Electrical and Computer Engineering Sungkyunkwan University Suwon16419 Korea Republic of Department of Physics Chemistry and Biology Linkoping University Linköping581 83 Sweden

Mortazavi et al. comment on the results of our paper "A novel two-dimensional boron-carbon-nitride BCN monolayer: A First-principles insight," in which we have considered different configurations of BCN. For clarification, we applied the fingerprint theory [1-3] to examine the similarity between the distinct structures. The fingerprint function is a crystal structure descriptor, an 1D-function related to the pair correlation function and diffraction patterns. It does not depend on absolute atomic coordinates, but only on interatomic distances. Small deviations in atomic positions will influence the fingerprints only slightly [1-3]. Fingerprint theory allows quantification of the degree of order and complexity of a crystal structure. © 2022, CC BY.

关键词： Monolayers

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Acoustic Power Divider Based on Compressibility-Near-Zero Propagation

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Physical Review Applied 2020年第2期14卷 024057-024057页

作者： Hussein Esfahlani Matthew S. Byrne Andrea Alù Electrical Engineering Institute École Polytechnique Fedérale de Lausanne (EPFL) CH-1015 Lausanne Switzerland Department of Electrical & Computer Engineering The University of Texas at Austin Austin Texas 78712 USA Photonics Initiative Advanced Science Research Center New York New York 10031 USA Kymeta Corporation Redmond Washington 98052 USA Naval Surface Warfare Center Carderock Division West Bethesda Maryland 20817 USA Physics Program Graduate Center New York New York 10016 USA

Materials with properties that can be described by a near-zero index of refraction have received significant attention in the fields of electromagnetics, optics, and acoustics, due to their extraordinary capabilities in wave manipulation. It was recently demonstrated theoretically and experimentally that acoustic waves could manifest near-zero-index propagation based on the effective compressibility of a waveguide channel approaching zero. In turn, this allows tunneling of acoustic waves with nearly infinite wavelength (or equivalently, uniform phase) when the channel cross section is much larger than the feeding lines. Here, we show that these concepts can be leveraged to realize an acoustic power divider and multiplexer offering tunneling of sound to an arbitrary number of output ports, with phase shifts equal to 0° or 180° and robust response to variations in the port position. We present analytical and numerical models describing the properties of this device and study limitations and trade-offs that occur in the presence of losses as the device size is scaled.

关键词： Acoustic metamaterials Acoustic wave phenomena Acoustics

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Moiré hyperbolic metasurfaces

arXiv

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arXiv 2020年

作者： Hu, Guangwei Krasnok, Alex Mazor, Yarden Qiu, Cheng-Wei Alù, Andrea Department of Electrical and Computer Engineering National University of Singapore Singapore117583 Singapore Photonics Initiative Advanced Science Research Center City University of New York 85 St. Nicholas Terrace New YorkNY10031 United States Department of Electrical and Computer Engineering University of Texas at Austin AustinTX78712 United States Physics Program Graduate Center City University of New York New YorkNY10016 United States Department of Electrical Engineering City College of New York New YorkNY10031 United States

Recent advances in twistronics of low-dimensional materials, such as bilayer graphene and transition-metal dichalcogenides, have enabled a plethora of unusual phenomena associated with moiré physics. However, several of these effects require demanding manipulation of superlattices at the atomic scale, such as the careful control of rotation angle between two closely spaced atomic lattices. Here, we study moiré hyperbolic plasmons in pairs of hyperbolic metasurfaces (HMTSs), unveiling analogous phenomena at the mesoscopic scale. HMTSs are known to support confined surface waves collimated towards specific directions determined by the metasurface dispersion. By rotating two evanescently coupled HMTSs with respect to one another, we unveil rich dispersion engineering, topological transitions at magic angles, broadband field canalization, and plasmon spin-Hall phenomena. These findings open remarkable opportunities to advance metasurface optics, enriching it with moiré physics and twistronic concepts. Copyright © 2020, The Authors. All rights reserved.

关键词： Surface waves

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Hierarchical modeling of nano-oscillator systems 16

Hierarchical modeling of nano-oscillator systems

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16th International Workshop on Cellular Nanoscale Networks and Their Applications, CNNA 2018

作者： Hull, Zachary Chiarulli, Donald Computer Engineering Graduate Program University of Pittsburgh PittsburghPA15261 United States Electrical and Computer Engineering University of Pittsburgh PittsburghPA15261 United States

ISBN: (纸本)9783800747665

This paper describes our effort to build a set of models for nano-oscillator systems that is compatible with modern EDA design tools. We have implemented a set of hierarchical models that spans an abstraction hierarchy patterned after CMOS design and includes device, circuit and system level models. The device models are based on empirical data sampled from hardware and the circuit and system models were verified against SPICE, MATLAB and C++. To date, we have built models for Spin Torque Oscillator (STO) based systems and Vanadium Dioxide (VO2) devices based on relaxation oscillator clusters. For space limitations, the examples shown here are based on the VO2 case. © VDE VERLAG GMBH.

关键词： Vanadium dioxide

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Requirements specification and evaluation for transient faults in communication protocols based on RT-FRIDA framework

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IFAC-PapersOnLine 2018年第10期51卷 76-81页

作者： Roque, Alexandre S. Nunes, Gerson L. Freitas, Edison P. Pereira, Carlos E. Graduate Program in Electrical Engineering Federal University of Rio Grande do Sul UFRGS Porto Alegre Brazil Computer Science and Engineering Department Regional Integrated University of High Uruguay and Missions URI Santo Angelo Brazil

This paper presents an evaluation of requirements specification for two critical real-time control systems, which depends of industrial communications protocols. It is proposed the use of aspect-oriented modeling (AOM) to map transient fault behaviors in design phases, with RT-FRIDA framework extended for fault modeling capabilities. Requirements specification for an Active suspension control system and for a fault detection control system applied in agricultural implements was made as case study. Faults are specified as non-functional requirements and evaluated applying a quantitative softgoal weight method. Results presented indicates aspect-oriented fault modeling as an important ally to specify faults that have potential to degrade performance of real-time control systems. © 2016

关键词： Suspensions (components) Active suspension systems Agricultural implements Control systems Fault detection Fault tree analysis Interactive computer systems Network protocols Real time control Real time systems Specifications Active suspension control Aspect oriented Aspect Oriented Modeling Industrial communications Non functional requirements Requirements analysis Requirements specifications Transient faults

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Terahertz Cavity Phonon Polaritons in the Deep-Strong Coupling Regime

Terahertz Cavity Phonon Polaritons in the Deep-Strong Coupli...

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International Conference on Infrared and Millimeter Waves

作者： Andrey Baydin Manukumara Manjappa Sobhan Subhra Mishra Hongjing Xu Jacques Doumani Fuyang Tay Dasom Kim Felix G. G. Hernandez Paulo H. O. Rappl Eduardo Abramof Ranjan Singh Junichiro Kono Department of Electrical and Computer Engineering Rice University Houston TX USA Smalley-Curl Institute Rice University Houston TX USA Department of Instrumentation and Applied Physics Indian Institute of Science Bangalore India Division of Physics and Applied Physics School of Physical and Mathematical Sciences Nanyang Technological University Singapore Department of Physics and Astronomy Rice University Houston TX USA Applied Physics Graduate Program Smalley-Curl Institute Rice University Houston TX USA Instituto de Física Universidade de São Paulo São Paulo SP Brazil Laboratório Associado de Sensores e Materiais Instituto Nacional de Pesquisas Espaciais São José dos ampos SP Brazil Center for Disruptive Photonic Technologies The Photonics Institute Nanyang Technological University Singapore Department of Material Science and NanoEngineering Rice University Houston TX USA

We have studied the resonant and nonperturbative coupling of transverse optical phonons in lead telluride with photons in small-mode-volume terahertz cavities, observing a giant vacuum Rabi splitting on the order of the uncoupled phonon and cavity frequencies. Our terahertz time-domain spectroscopy experimental data, systematically collected as a function of sample thickness, temperature, and cavity length, can be well reproduced by our electromagnetic simulations. These results demonstrate that this uniquely tunable platform is promising for realizing and understanding predicted cavity-vacuum-induced ferroelectric instabilities, as well as for exploring applications of light-matter coupling in the ultra-and deep-strong coupling regimes in quantum technology.

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Author Correction: Generation of accurate, expandable phylogenomic trees with uDance

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Nature biotechnology 2024年第5期42卷 814页

作者： Metin Balaban Yueyu Jiang Qiyun Zhu Daniel McDonald Rob Knight Siavash Mirarab Bioinformatics and Systems Biology Graduate Program University of California San Diego La Jolla CA USA. Department of Electrical and Computer Engineering University of California San Diego La Jolla CA USA. Biodesign Center for Fundamental and Applied Microbiomics Arizona State University Tempe AZ USA. School of Life Sciences Arizona State University Tempe AZ USA. Department of Pediatrics University of California San Diego La Jolla CA USA. Department of Computer Science and Engineering Jacobs School of Engineering University of California San Diego La Jolla CA USA. Department of Bioengineering University of California San Diego La Jolla CA USA. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. Department of Electrical and Computer Engineering University of California San Diego La Jolla CA USA. smirarab@ucsd.edu. Department of Computer Science and Engineering Jacobs School of Engineering University of California San Diego La Jolla CA USA. smirarab@ucsd.edu. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. smirarab@ucsd.edu.

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