检索结果-内蒙古大学图书馆

Research Square 2021年

作者： Tu, Hsiung-Lin Gebreyesus, Sofani Tafesse Siyal, Asad Ali Kitata, Reta Birhanu Chen, Eric Sheng-Wen Enkhbayar, Bayarmaa Angata, Takashi Lin, Kuo-I Chen, Yu-Ju Institute of Chemistry Academia Sinica Taipei115 Taiwan Taiwan International Graduate program Nano Science and Technology program Academia Sinica Taipei115 Taiwan Department of Chemistry National Taiwan University Taipei106 Taiwan Taiwan International Graduate Program Chemical Biology and Molecular Biophysics Program Academia Sinica Taipei115 Taiwan Department of Chemistry National Tsing Hua University Hsinchu300 Taiwan Institute of Biological Chemistry Academia Sinica Taipei115 Taiwan Genomics Research Center Academia Sinica Taipei115 Taiwan Genome and Systems Biology Degree Program Academia Sinica and National Taiwan University Taiwan

Single cell proteomics provides the ultimate resolution to reveal cellular phenotypic heterogeneity and functional network underlying biological processes. Here, we present an ultra-streamlined workflow combining an integrated proteomic chip (iProChip) and data-independent-acquisition (DIA) mass spectrometry for sensitive microproteomics analysis down to single cell level. The iProChip offers multiplexed and automated all-in-one station from cell isolation/counting/imaging to complete proteomic processing within a single device. By mapping to project-specific spectra libraries, the iProChip-DIA enables profiling of 1160 protein groups from triplicate analysis of a single mammalian cell. Furthermore, the applicability of iProChip-DIA was demonstrated using both adherent and non-adherent malignant cells, which reveals 5 orders of proteome coverage, highly consistent ~100-fold protein quantification (1-100 cells) and high reproducibility with low missing values ( © , CC BY.

关键词： Mass spectrometry

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Synthesis and Evaluation of Metal-Impregnated Carbon Cloth Supplementation to Improve Anaerobic Digestion Performance from Municipal Sludge

SSRN

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SSRN 2023年

作者： Kumar, Vikas Devi, Parmila Patil, Abhishek Santana, Juan Camilo Bobowski, Jake S. Hallam, Steven J. Eskicioglu, Cigdem UBC Bioreactor Technology Group School of Engineering University of British Columbia Okanagan Campus KelownaBCV1V 1V7 Canada Department of Microbiology and Immunology University of British Columbia VancouverBCV6T 1Z4 Canada Department of Physics University of British Columbia Okanagan Campus KelownaBCV1V 1V7 Canada Graduate Program in Bioinformatics University of British Columbia VancouverBCV6T 1Z4 Canada Genome Science and Technology Program University of British Columbia 2329 West Mall VancouverBCV6T 1Z4 Canada Life Sciences Institute University of British Columbia VancouverBCV6T 1Z3 Canada Ecoscope Training Program University of British Columbia VancouverBCV6T 1Z3 Canada

This study investigated the effect of metal-impregnated carbon cloth (CC) supplementation on thermophilic anaerobic digestion (AD) improvement utilizing municipal sludge as a biomass input. Four types of metal-impregnated CC nanocomposites (Fe/CC, Ni/CC, Ni/Fe/CC, NiPcS/Fe/CC) were synthesized from activated CC (A-CC) using hydrothermal synthesis and compared with untreated CC (U-CC) to evaluate their functional significance for enhanced AD. The main factors inspected were electrical conductivity (EC) and Brunauer–Emmett–Teller (BET) surface area. A-CC had the highest surface area of 386.15 m2/g, followed by Fe/CC, NiPcS/Fe/CC, Ni/CC and Ni/Fe/CC with 140.96, 52.27, 43.52 and 36.07 m2/g, respectively. The A-CC and Fe/CC reactors produced 3.45 and 2.70 times more methane than Control (without CC) in the first 9 days. In contrast, the methane production for U-CC, Ni/CC, Ni/Fe/CC and NiPcS/Fe/CC was only 0.87, 1.26, 1.01 and 1.29 times, respectively, compared to Control. At a higher BET surface (>350 m2/g), the surface area becomes a more dominant factor, and the increase of EC value (>2.9*104 1/Ω.m) does not have an impact on methane enhancement. Microbial community analysis revealed that A-CC had the highest abundances of Syntrophomonas, Coprothermobacter and methanogenic populations, including Methanothermobacter and Methanosarcina, within 3 days compared to Control and metal-impregnated CC. There were minimal changes in microbial community composition in metal-impregnated CC compared to the U-CC. The result implies that the efficacy of CC supplementation for AD upgrading largely depends on the higher surface area compared to metal impregnation or conductivity. © 2023, The Authors. All rights reserved.

关键词： Anaerobic digestion

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Author Correction: Single-cell transcriptomics uncovers EGFR signaling-mediated gastric progenitor cell differentiation in stomach homeostasis

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Nature communications 2023年第1期14卷 6540页

作者： Hitomi Takada Yohei Sasagawa Mika Yoshimura Kaori Tanaka Yoshimi Iwayama Tetsutaro Hayashi Ayako Isomura-Matoba Itoshi Nikaido Akira Kurisaki Laboratory of Stem Cell Technologies Graduate School of Science and Technology Nara Institute of Science and Technology Takayama-cho Ikoma Nara Japan. Laboratory for Bioinformatics Research RIKEN Center for Biosystems Dynamics Research Wako Saitama Japan. Department of Functional Genome Informatics Biological Data Science Medical Research Institute Tokyo Medical and Dental University Bunkyo Tokyo Japan. Laboratory for Bioinformatics Research RIKEN Center for Biosystems Dynamics Research Wako Saitama Japan. itoshi.nikaido@riken.jp. Department of Functional Genome Informatics Biological Data Science Medical Research Institute Tokyo Medical and Dental University Bunkyo Tokyo Japan. itoshi.nikaido@riken.jp. Master's/Doctoral Program in Life Science Innovation (Bioinformatics) Degree Programs in Systems and Information Engineering Graduate School of Science and Technology University of Tsukuba Tsukuba Ibaraki Japan. itoshi.nikaido@riken.jp. Laboratory of Stem Cell Technologies Graduate School of Science and Technology Nara Institute of Science and Technology Takayama-cho Ikoma Nara Japan. akikuri@bs.naist.jp.

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Magnetically Tuned Continuous Transition from Weak to Strong Coupling in Terahertz Magnon Polaritons

arXiv

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arXiv 2022年

作者： Baydin, Andrey Hayashida, Kenji Makihara, Takuma Tay, Fuyang Ma, Xiaoxuan Ren, Wei Ma, Guohong Noe, G. Timothy Katayama, Ikufumi Takeda, Jun Nojiri, Hiroyuki Cao, Shixun Bamba, Motoaki Kono, Junichiro Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States The Smalley-Curl Institute Rice University HoustonTX77005 United States Division of Applied Physics Graduate School of Engineering Hokkaido University Hokkaido Sapporo060-8628 Japan Department of Physics and Astronomy Rice University HoustonTX77005 United States Applied Physics Graduate Program Smalley-Curl Institute Rice University HoustonTX77005 United States Department of Physics International Center of Quantum and Molecular Structures Materials Genome Institute Shanghai University Shanghai200444 China Department of Physics Graduate School of Engineering Science Yokohama National University Yokohama240-8501 Japan Institute for Materials Research Tohoku University Sendai980-8577 Japan The Hakubi Center for Advanced Research Kyoto University Kyoto606-8502 Japan Department of Physics I Kyoto University Kyoto606-8502 Japan PRESTO Japan Science and Technology Agency Kawaguchi332-0012 Japan Department of Materials Science and NanoEngineering Rice University HoustonTX77005 United States

Depending on the relative rates of coupling and dissipation, a light-matter coupled system is either in the weak- or strong-coupling regime. Here, we present a unique system where the coupling rate continuously increases with an externally applied magnetic field while the dissipation rate remains constant, allowing us to monitor a weak-to-strong coupling transition as a function of magnetic field. We observed a Rabi splitting of a terahertz magnon mode in yttrium orthoferrite above a threshold magnetic field of ∼14 T. Based on a microscopic theoretical model, we show that with increasing magnetic field the magnons transition into magnon polaritons through an exceptional point, which will open up new opportunities for in situ control of non-Hermitian systems. Copyright © 2022, The Authors. All rights reserved.

关键词： Polariton

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Two-Step Activated Carbon Cloth Enhances Microbial Interactions and Methane Production During Anaerobic Digestion of Municipal Sludge

SSRN

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SSRN 2022年

作者： Kumar, Vikas Kieft, Brandon Devi, Parmila Hallam, Steven J. Eskicioglu, Cigdem UBC Bioreactor Technology Group School of Engineering University of British Columbia Okanagan Campus KelownaBCV1V 1V7 Canada Department of Microbiology and Immunology University of British Columbia VancouverBCV6T 1Z4 Canada Department of Microbiology and Immunology University of British Columbia VancouverBC Canada Graduate Program in Bioinformatics University of British Columbia VancouverBCV6T 1Z4 Canada Genome Science and Technology Program University of British Columbia 2329 West Mall VancouverBCV6T 1Z4 Canada Life Sciences Institute University of British Columbia VancouverBCV6T 1Z3 Canada ECOSCOPE Training Program University of British Columbia VancouverBCV6T 1Z3 Canada

This study investigated the effects of two-step activated carbon cloth (CC) on the syntrophic microbial association during anaerobic digestion (AD) of municipal sludge. A simple two-step activation, acid pretreatment (H2SO4/HNO3) followed by air calcination (550°C), was used to convert commercial untreated CC (U-CC) into high performance activated CC (A-CC). Biochemical methane potential (BMP) assays conducted at different CC dosages indicated that A-CC, at a dose of 0.80 g A-CC {1.48 g A-CC/g-VS (volatile solids)substrate}, enhanced methane yield from by 3.7 times and reduced the lag phase up to 15.6-fold, compared to non-CC control within 3 days. Characterization of CC surfaces and kinetic modeling indicated a 435-times increased A-CC pore size area (Barrett, Joyner, and Halenda, BJH) with the potential to promote electron transfer and accelerate kinetic rates of methane production. Consistent with these results, microbial community structure analysis of CC surfaces indicated rapid adherence of methanogenic archaea and bacterial syntrophs to A-CC within 3 days. Multi-variate statistical analyses indicated that these populations were highly enriched on 0.80 g A-CC dosage compared to controls. Based on these results it can be concluded that A-CC provides a robust selective environment for syntrophic energy metabolism driving enhanced methane production from municipal sludge. © 2022, The Authors. All rights reserved.

关键词： Anaerobic digestion

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Dynamic phenotypic heterogeneity and the evolution of multiple RNA subtypes in hepatocellular carcinoma:the PLANET study

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National science Review 2022年第3期9卷 96-109页

作者： Weiwei Zhai Hannah Lai Neslihan Arife Kaya Jianbin Chen Hechuan Yang Bingxin Lu Jia Qi Lim Siming Ma Sin Chi Chew Khi Pin Chua Jacob Josiah Santiago Alvarez Pauline Jieqi Chen Mei Mei Chang Lingyan Wu Brian K.P.Goh Alexander Yaw-Fui Chung Chung Yip Chan Peng Chung Cheow Ser Yee Lee Juinn Huar Kam Alfred Wei-Chieh Kow Iyer Shridhar Ganpathi Rawisak Chanwat Jidapa Thammasiri Boon Koon Yoong Diana Bee-Lan Ong Vanessa H.de Villa Rouchelle D.Dela Cruz Tracy Jiezhen Loh Wei Keat Wan Zeng Zeng Anders Jacobsen Skanderup Yin Huei Pang Krishnakumar Madhavan Tony Kiat-Hon Lim Glenn Bonney Wei Qiang Leow Valerie Chew Yock Young Dan Wai Leong Tam Han Chong Toh Roger Sik-Yin Foo Pierce Kah-Hoe Chow Genome Institute of Singapore Agency for Science Technology and Research Key Laboratory of Zoological Systematics and Evolution Institute of Zoology Chinese Academy of Sciences Center for Excellence in Animal Evolution and Genetics Chinese Academy of Sciences School of Biological Sciences Nanyang Technological University Division of Biosciences Faculty of Life Sciences Division of Surgery and Surgical Oncology National Cancer Centre Department of Hepato-Pancreato-Biliary and Transplant Surgery Singapore General Hospital Division of Hepatobiliary and Pancreatic Surgery Department of Surgery University Surgical Cluster National University Health System Hepato-Pancreato-Biliary Surgery Unit Department of Surgery National Cancer Institute Division of Pathology National Cancer Institute Department of Surgery Faculty of Medicine University of Malaya Department of Surgery and Center for Liver Disease Management and Transplantation The Medical City Department of Laboratories The Medical City Department of Pathology Singapore General Hospital Institute for Infocomm Research ASTAR Department of Pathology National University Health System Translational Immunology Institute (TII) Sing Health Duke-NUS Academic Medical Centre Division of Gastroenterology and Hepatology University Medicine Cluster National University Hospital Department of Biochemistry Yong Loo Lin School of Medicine National University of Singapore Cancer Science Institute of Singapore National University of Singapore Division of Medical Oncology National Cancer Center Singapore Cardiovascular Research Institute National University of Singapore National University Healthcare System Singhealth-Duke-NUS Academic Surgery Program Duke-NUS Graduate Medical School Institute of Molecular and Cell Biology Agency for Science Technology and Research

Intra-tumor heterogeneity(ITH) is a key challenge in cancer treatment, but previous studies have focused mainly on the genomic alterations without exploring phenotypic(transcriptomic and immune)heterogeneity. Using one of the largest prospective surgical cohorts for hepatocellular carcinoma(HCC)with multi-region sampling, we sequenced whole genomes and paired transcriptomes from 67 HCC patients(331 samples). We found that while genomic ITH was rather constant across stages, phenotypic ITH had a very different trajectory and quickly diversified in stage Ⅱ patients. Most strikingly, 30% of patients were found to contain more than one transcriptomic subtype within a single tumor. Such phenotypic ITH was found to be much more informative in predicting patient survival than genomic ITH and explains the poor efficacy of single-target systemic therapies in HCC. Taken together, we not only revealed an unprecedentedly dynamic landscape of phenotypic heterogeneity in HCC, but also highlighted the importance of studying phenotypic evolution across cancer types.

关键词： NADH oxidase H2O2 production oxidative phosphorylation

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Α γ-tubulin complex-dependent pathway suppresses ciliogenesis by promoting cilia disassembly

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Cell Reports 2022年第7期41卷 111642页

作者： Shankar, Sahana Hsu, Zi-Ting Ezquerra, Artur Li, Chien-Chien Huang, Tzu-Lun Coyaud, Etienne Viais, Ricardo Grauffel, Cédric Raught, Brian Lim, Carmay Lüders, Jens Tsai, Su-Yi Hsia, Kuo-Chiang Molecular and Cell Biology Taiwan International Graduate Program Academia Sinica and National Defense Medical Center Taipei 11490 Taiwan Institute of Molecular Biology Academia Sinica Taipei 11529 Taiwan Department of Life Science National Taiwan University Taipei 10617 Taiwan Institute for Research in Biomedicine (IRB Barcelona) The Barcelona Institute of Science and Technology Barcelona 08028 Spain Princess Margaret Cancer Centre University Health Network 101 College Street Toronto M5G 1L7 ON Canada Department of Medical Biophysics University of Toronto Toronto M5G 1L7 ON Canada Institute of Biomedical Sciences Academia Sinica Taipei Taiwan Research Center for Developmental Biology and Regenerative Medicine National Taiwan University Taipei 10617 Taiwan Genome and Systems Biology Degree Program National Taiwan University and Academia Sinica Taipei 10617 Taiwan Institute of Biochemistry and Molecular Biology College of Life Sciences National Yang-Ming University Taipei 11221 Taiwan

The primary cilium, a microtubule-based sensory organelle, undergoes cycles of assembly and disassembly that govern the cell cycle progression critical to cell proliferation and differentiation. Although cilia assembly has been studied extensively, the molecular mechanisms underlying cilia disassembly are less well understood. Here, we uncover a γ-tubulin ring complex (γ-TuRC)-dependent pathway that promotes cilia disassembly and thereby prevents cilia formation. We further demonstrate that Kif2A, a kinesin motor that bears microtubule-depolymerizing activity, is recruited to the cilium basal body in a γ-TuRC-dependent manner. Our mechanistic analyses show that γ-TuRC specifically recruits Kif2A via the GCP2 subunit and its binding partner Mzt2. Hence, despite the long-standing view that γ-TuRC acts mainly as a microtubule template, we illustrate that its functional heterogeneity at the basal body facilitates both microtubule nucleation and Kif2A recruitment-mediated regulation of ciliogenesis, ensuring cell cycle progression. © 2022 The Author(s)

关键词： cell cycle ciliogenesis CP: Molecular biology kinesin motor microtubule primary cilium γ-tubulin ring complex

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Correction to: Long noncoding RNA BCRP3 stimulates VPS34 and autophagy activities to promote protein homeostasis and cell survival

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Journal of biomedical science 2022年第1期29卷 59页

作者： Ruei Liang Yan Chiu Lin Luan Chun Chieh Liao Li Heng Liu Fei Yun Chen Hsin Yi Chen Ruey Hwa Chen Institute of Biological Chemistry Academia Sinica Taipei 115 Taiwan. Institute of Molecular Medicine College of Medicine National Taiwan University Taipei 100 Taiwan. Genome and Systems Biology Degree Program College of Life Science National Taiwan University Taipei 106 Taiwan. Graduate Institute of Cancer Biology and Drug Discovery College of Medical Science and Technology Taipei Medical University Taipei 110 Taiwan. Ph.D. Program for Cancer Molecular Biology and Drug Discovery College of Medical Science and Technology Taipei Medical University Taipei 110 Taiwan. Institute of Biological Chemistry Academia Sinica Taipei 115 Taiwan. rhchen@gate.sinica.edu.tw. Institute of Molecular Medicine College of Medicine National Taiwan University Taipei 100 Taiwan. rhchen@gate.sinica.edu.tw. Genome and Systems Biology Degree Program College of Life Science National Taiwan University Taipei 106 Taiwan. rhchen@gate.sinica.edu.tw.

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Protect transgender scientists

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science 2025年第6753期388卷 1283-1284页

作者： Nasa Sinnott-Armstrong Desiree Forsythe Jane M Benoit Callie R. Chappell Lisa S. Y. Coe Bruno Francesco Rodrigues de Oliveira Natalya Evans Anna C. Fagre Jonathan M. Gilligan Maria Hamilton Colin Moran Henneberry Suzanne L. Ishaq Juliet Johnston Erin Krichilsky Jamie Alcira Lopez Kay McMonigal Melanie Ortiz Alvarez de la Campa Rahmeen Rahman Nicole E. Schwartz Lauren Talluto Eric J. Taylor José M. Vargas-Muñiz J. L. Weissman Herbold Computational Biology Program Public Health Sciences Division Fred Hutchinson Cancer Center Seattle WA USA. Department of Genome Sciences University of Washington Seattle WA USA. Department of Biology Santa Clara University Santa Clara CA USA. Department of Biological Science Florida State University Tallahassee FL USA. Department of Biology Stanford University Stanford CA USA. Department of Biology and Genetics Institute University of Florida Gainesville FL USA. School of Teaching and Learning College of Education University of Florida Gainesville FL USA. Department of Microbiology and Parasitology Biomedical Institute Fluminense Federal University Niterói RJ Brazil. Marine Science Institute University of California Santa Barbara Santa Barbara CA USA. Department of Microbiology Immunology and Pathology Colorado State University Fort Collins CO USA. Department of Earth and Environmental Sciences Vanderbilt University Nashville TN USA. Department Civil and Environmental Engineering Vanderbilt University Nashville TN USA. Department of Marine Sciences University of Georgia Athens GA USA. Department of Ecology and Evolution Stony Brook University Stony Brook NY USA. Department of Animal and Veterinary Sciences University of Maine Orono ME USA. Microbes and Social Equity working group Orono ME USA. School of Science and Math Hampshire College Amherst MA USA. American Museum of Natural History Richard Gilder Graduate School New York NY USA. Department of Ecology Evolution and Environmental Biology Columbia University New York NY USA. Department of Bioengineering Stanford University Stanford CA USA. Department of Applied Physics Stanford University Stanford CA USA. College of Fisheries and Ocean Sciences University of Alaska Fairbanks Fairbanks AK USA. Department of Molecular Microbiology and Immunology Brown University Providence RI USA. Department of Infectious Disease Imperial College London London UK. Depart

Transgender and gender nonconforming (TGnC) people are a primary target of the Trump administration. Multiple executive orders seek to erase TGnC protections; mandate denial of gender identity; and ban diversity, equity, and inclusion (DEI) (1). Changes to federal funding policies related to TGnC individuals and DEI threaten to curtail academic diversity and freedom (2). Institutions have been hesitant to resist, but for many TGnC scientists—especially TGnC individuals of color, immigrants, and those with disabilities—invisibility is not an option. Anticipatory obedience (3, 4), and even passive allyship, is insufficient; institutions must abandon neutrality and defend targeted communities to minimize further harm (5, 6). As queer and TGnC scientists, we call on researchers at all levels—from undergraduates to university presidents—to take direct, consistent, and rapid action.

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Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers

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Nature genetics 2023年第6期55卷 1078页

作者： Yuan Yuan Young Seok Ju Youngwook Kim Jun Li Yumeng Wang Christopher J Yoon Yang Yang Inigo Martincorena Chad J Creighton John N Weinstein Yanxun Xu Leng Han Hyung-Lae Kim Hidewaki Nakagawa Keunchil Park Peter J Campbell Han Liang Department of Bioinformatics and Computational Biology The University of Texas MD Anderson Cancer Center Houston TX USA. Cancer Genome Project Wellcome Trust Sanger Institute Hinxton UK. Graduate School of Medical Science and Engineering Korea Advanced Institute of Science and Technology Daejeon Korea. Department of Health Science and Technology Samsung Advanced Institute for Health Science and Technology Sungkyunkwan University School of Medicine Seoul Korea. Samsung Genome Institute Samsung Medical Center Seoul Korea. Quantitative and Computational Biosciences Graduate Program Baylor College of Medicine Houston TX USA. Division of Biostatistics The University of Texas Health Science Center at Houston School of Public Health Houston TX USA. Department of Medicine and Dan L. Duncan Cancer Center Division of Biostatistics Baylor College of Medicine Houston TX USA. Department of Systems Biology The University of Texas MD Anderson Cancer Center Houston TX USA. Department of Applied Mathematics and Statistics Johns Hopkins University Baltimore MD USA. Department of Biochemistry and Molecular Biology The University of Texas Health Science Center at Houston McGovern Medical School Houston TX USA. Department of Biochemistry Ewha Womans University School of Medicine Seoul Korea. Laboratory for Cancer Genomics RIKEN Center for Integrative Medical Sciences Yokohama Japan. Division of Hematology/Oncology Samsung Medical Center Sungkyunkwan University School of Medicine Seoul Korea. kpark@skku.edu. Samsung Advanced Institute for Health Sciences and Technology Sungkyunkwan University School of Medicine Seoul South Korea. kpark@skku.edu. Cancer Genome Project Wellcome Trust Sanger Institute Hinxton UK. pc8@sanger.ac.uk. Department of Haematology University of Cambridge Cambridge UK. pc8@sanger.ac.uk. Department of Bioinformatics and Computational Biology The University of Texas MD Anderson Cancer Center Houston TX USA. hliang1@mdanderson.org. Quantitative and Comp

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