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Correction to: Dietary intervention using (1,3)/(1,6)-β-glucan, a fungus-derived soluble prebiotic ameliorates high-fat diet-induced metabolic distress and alters beneficially the gut microbiota in mice model

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European journal of nutrition 2021年第4期60卷 2273页

作者： Karthika Muthuramalingam Vineet Singh Changmin Choi Seung In Choi Young Mee Kim Tatsuya Unno Moonjae Cho Department of Biochemistry School of Medicine Jeju National University Jeju 63243 Republic of Korea. Faculty of Biotechnology School of Life Sciences SARI Jeju National University Jeju 63243 Republic of Korea. Department of Pharmaceutical Research Institute Quegen Biotech Co. Ltd Seoul 429931 Republic of Korea. Faculty of Biotechnology School of Life Sciences SARI Jeju National University Jeju 63243 Republic of Korea. tatsu@jejunu.ac.kr. Subtropical/Tropical Organism Gene Bank Jeju National University Jeju 63243 Republic of Korea. tatsu@jejunu.ac.kr. Department of Biochemistry School of Medicine Jeju National University Jeju 63243 Republic of Korea. moonjcho@jejunu.ac.kr. Institute of Medical Science Jeju National University Jeju 63241 Republic of Korea. moonjcho@jejunu.ac.kr. Interdisciplinary Graduate Program in Advanced Convergence Technology & Science Jeju National University Jeju 63241 Republic of Korea. moonjcho@jejunu.ac.kr.

A correction to this paper has been published: https://***/10.1007/s00394-021-02537-9

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Briavioid D, a rare 7β,8β-epoxybriarane from Briareum violaceum

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Tetrahedron Letters 2023年 118卷

作者： Thanh Hao Huynh Chou-Yuan Ko Hsin-Tzu Liu Yen-Po Chen Mingzi M. Zhang Lun Kelvin Tsou Zhi-Hong Wen Su-Ying Chien Ping-Jyun Sung Department of Marine Biotechnology and Resources National Sun Yat-sen University Kaohsiung 804201 Taiwan National Museum of Marine Biology and Aquarium Pingtung 944401 Taiwan Division of Gastroenterology and Hepatology Department of Internal Medicine Kaohsiung Armed Forces General Hospital Kaohsiung 802301 Taiwan Institute of Medical Science and Technology National Sun Yat-sen University Kaohsiung 804201 Taiwan Department of Medical Research Hualien Tzu Chi Hospital Buddhist Tzu Chi Medical Foundation Hualien 970473 Taiwan Department of Obstetrics and Gynecology Kaohsiung Armed Forces General Hospital Kaohsiung 802301 Taiwan Institute of Molecular and Genomic Medicine National Health Research Institutes Zhunan Miaoli 350401 Taiwan Institute of Biotechnology and Pharmaceutical Research National Health Research Institutes Zhunan Miaoli 350401 Taiwan Institute of BioPharmaceutical Sciences National Sun Yat-sen University Kaohsiung 804201 Taiwan Instrumentation Center National Taiwan University Taipei 106319 Taiwan Chinese Medicine Research and Development Center China Medical University Hospital Taichung 404394 Taiwan Graduate Institute of Natural Products Kaohsiung Medical University Kaohsiung 807378 Taiwan Ph.D. Program in Pharmaceutical Biotechnology Fu Jen Catholic University New Taipei City 242062 Taiwan

A rare 7β,8β-epoxybriarane, briavioid D ( 1 ), has been isolated from a cultured octocoral Briareum violaceum . The structure of 1 was deduced by extensive 2D NMR studies. Single-crystal X-ray diffraction analysis was performed to identify the structure of 1 and this compound was found to reduce the release of iNOS to 85.77 %, at a concentration of 10 μM.

关键词： Briareum violaceum Briavioid Briarane X-ray iNOS

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Author Correction: Wiskott-Aldrich syndrome protein forms nuclear condensates and regulates alternative splicing

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Nature communications 2022年第1期13卷 5291页

作者： Baolei Yuan Xuan Zhou Keiichiro Suzuki Gerardo Ramos-Mandujano Mengge Wang Muhammad Tehseen Lorena V Cortés-Medina James J Moresco Sarah Dunn Reyna Hernandez-Benitez Tomoaki Hishida Na Young Kim Manal M Andijani Chongwei Bi Manching Ku Yuta Takahashi Jinna Xu Jinsong Qiu Ling Huang Christopher Benner Emi Aizawa Jing Qu Guang-Hui Liu Zhongwei Li Fei Yi Yanal Ghosheh Changwei Shao Maxim Shokhirev Patrizia Comoli Francesco Frassoni John R Yates Xiang-Dong Fu Concepcion Rodriguez Esteban Samir Hamdan Juan Carlos Izpisua Belmonte Mo Li Bioscience Program Biological and Environmental Science and Engineering Division King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Kingdom of Saudi Arabia. Gene Expression Laboratory Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. Institute for Advanced Co-Creation Studies Graduate School of Engineering Science Osaka University Osaka Japan. Department of Cell Biology Scripps Research Institute La Jolla CA 92037 USA. The Waitt Advanced Biophotonics Core Facility Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. Altos Labs Inc. 5510 Morehouse Drive Suite 300 San Diego CA 92121 USA. Laboratory of Biological Chemistry School of Pharmaceutical Sciences Wakayama Medical University 25-1 Shitibancho Wakayama Wakayama 640-8156 Japan. Next-generation sequencing core Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. Life Science Center Tsukuba Advanced Research Alliance University of Tsukuba 1-1-1 Tennoudai Tsukuba Ibaraki 305-8577 Japan. Department of Cellular & Molecular Medicine University of California at San Diego La Jolla CA 92093 USA. Integrative Genomics and Bioinformatics Core Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. State Key Laboratory of Membrane Biology Institute of Zoology Chinese Academy of Sciences Beijing 100101 China. University of Southern California 1333 San Pablo Street MMR 618 Los Angeles CA 90033 USA. Ambys Medicines 131 Oyster Point Blvd. Suite 200 South San Francisco CA 94080 USA. Pediatric Hematology/Oncology and Cell Factory Fondazione IRCCS Policlinico San Matteo Pavia Italy. Department of Research Laboratories and Director of Center for Stem Cell and Cell Therapy Instituto G. Gaslini Children Hospital Scientific Institute 16147 Genova Italy. Bioscience Program Biological and Environmental Science and Engineering

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Effect of climate on traits of dominant and rare tree species in the world's forests

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Nature communications 2025年第1期16卷 4773页

作者： Iris Hordijk Lourens Poorter Jingjing Liang Peter B Reich Sergio de-Miguel Gert-Jan Nabuurs Javier G P Gamarra Han Y H Chen Mo Zhou Susan K Wiser Hans Pretzsch Alain Paquette Nicolas Picard Bruno Hérault Jean-Francois Bastin Giorgio Alberti Meinrad Abegg Yves C Adou Yao Angelica M Almeyda Zambrano Braulio V Alvarado Esteban Alvarez-Davila Patricia Alvarez-Loayza Luciana F Alves Iêda Amaral Christian Ammer Clara Antón-Fernández Alejandro Araujo-Murakami Luzmila Arroyo Valerio Avitabile Gerardo A Aymard C Timothy Baker Olaf Banki Jorcely Barroso Meredith L Bastian Luca Birigazzi Philippe Birnbaum Robert Bitariho Pascal Boeckx Frans Bongers Olivier Bouriaud Pedro H S Brancalion Susanne Brandl Francis Q Brearley Roel Brienen Eben N Broadbent Helge Bruelheide Roberto Cazzolla Gatti Ricardo G Cesar Goran Cesljar Robin L Chazdon Chelsea Chisholm Emil Cienciala Connie J Clark David B Clark Gabriel Colletta David Coomes Fernando Cornejo Valverde Jose J Corral-Rivas Philip Crim Jonathan Cumming Selvadurai Dayanandan André L de Gasper Mathieu Decuyper Géraldine Derroire Ben DeVries Ilija Djordjevic Aurélie Dourdain Jiri Dolezal Nestor Laurier Engone Obiang Brian Enquist Teresa Eyre Adandé Belarmain Fandohan Tom M Fayle Leandro V Ferreira Ted R Feldpausch Leena Finér Markus Fischer Christine Fletcher Lorenzo Frizzera Damiano Gianelle Henry B Glick David Harris Andrew Hector Andreas Hemp John Herbohn Annika Hillers Eurídice N Honorio Coronado Cang Hui Hyunkook Cho Thomas Ibanez Ilbin Jung Nobuo Imai Andrzej M Jagodzinski Bogdan Jaroszewicz Vivian Johannsen Carlos A Joly Tommaso Jucker Viktor Karminov Kuswata Kartawinata Elizabeth Kearsley David Kenfack Deborah Kennard Sebastian Kepfer-Rojas Gunnar Keppel Mohammed Latif Khan Timothy Killeen Hyun Seok Kim Kanehiro Kitayama Michael Köhl Henn Korjus Florian Kraxner Diana Laarmann Mait Lang Simon Lewis Huicui Lu Natalia Lukina Brian Maitner Yadvinder Malhi Eric Marcon Beatriz Schwantes Marimon Ben Hur Marimon-Junior Andrew Robert Marshall Emanuel Martin Olga Martynenko Jorge A Mea Institute of Integrative Biology ETH Zurich (Swiss Federal Institute of Technology) Zurich Switzerland. irishordijk@***. Wageningen University and Research Wageningen The Netherlands. irishordijk@***. Wageningen University and Research Wageningen The Netherlands. Department of Forestry and Natural Resources Purdue University West Lafayette IN USA. Department of Forest Resources University of Minnesota St Paul MN USA. Hawkesbury Institute for the Environment Western Sydney University Penrith NSW Australia. Department of Agricultural and Forest Sciences and Engineering University of Lleida Lleida Spain. Forest Science and Technology Centre of Catalonia (CTFC) Solsona Spain. Forestry Division Food and Agriculture Organization of the United Nations Rome Italy. Faculty of Natural Resources Management Lakehead University Thunder Bay ON Canada. Manaaki Whenua-Landcare Research Lincoln New Zealand. Chair for Forest Growth and Yield Science TUM School for Life Sciences Technical University of Munich Munich Germany. Centre for Forest Research Université du Québec à Montréal Montréal QC Canada. GIP ECOFOR Paris France. CIRAD Forêts et Sociétés Montpellier France. Forêts et Sociétés Univ Montpellier CIRAD Montpellier France. Gembloux Agro Bio-Tech University of Liege Liege Belgium. Faculty of Science and Technology Free University of Bolzano Bolzano Italy. Department of Agricultural Food Environmental and Animal Sciences University of Udine Udine Italy. Swiss Federal Institute for Forest Snow and Landscape Research WSL Birmensdorf Switzerland. UFR Biosciences University Félix Houphouët-Boigny Abidjan Côte d'Ivoire. Spatial Ecology and Conservation Laboratory Center for Latin American Studies University of Florida Gainesville FL USA. Forestry School Tecnológico de Costa Rica TEC Cartago Costa Rica. Fundacion ConVida Universidad Nacional Abierta y a Distancia UNAD Medellin Colombia. Field Museum of Natural History Chicago IL USA. Center for Trop

Species' traits and environmental conditions determine the abundance of tree species across the globe. The extent to which traits of dominant and rare tree species differ remains untested across a broad environmental range, limiting our understanding of how species traits and the environment shape forest functional composition. We use a global dataset of tree composition of >22,000 forest plots and 11 traits of 1663 tree species to ask how locally dominant and rare species differ in their trait values, and how these differences are driven by climatic gradients in temperature and water availability in forest biomes across the globe. We find three consistent trait differences between locally dominant and rare species across all biomes; dominant species are taller, have softer wood and higher loading on the multivariate stem strategy axis (related to narrow tracheids and thick bark). The difference between traits of dominant and rare species is more strongly driven by temperature compared to water availability, as temperature might affect a larger number of traits. Therefore, climate change driven global temperature rise may have a strong effect on trait differences between dominant and rare tree species and may lead to changes in species abundances and therefore strong community reassembly.

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The genome-wide association study of serum IgE levels demonstrated a shared genetic background in allergic diseases

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Clinical immunology (Orlando, Fla.) 2024年 260卷 109897页

作者： Hsing-Fang Lu Chen-Hsing Chou Ying-Ju Lin Shunsuke Uchiyama Chikashi Terao Yu-Wen Wang Jai-Sing Yang Ting-Yuan Liu Henry Sung-Ching Wong Sean Chun-Chang Chen Fuu-Jen Tsai Department of Medical Research China Medical University Hospital Taichung 404327 Taiwan Laboratory for Statistical and Translational Genetics RIKEN Center for Integrative Medical Sciences Yokohama Japan. PhD Program for Health Science and Industry College of Health Care China Medical University Taichung Taiwan Department of Health Services Administration China Medical University Taichung Taiwan. Genetic Center Department of Medical Research China Medical University Hospital Taichung Taiwan School of Chinese Medicine China Medical University Taichung Taiwan. Laboratory for Statistical and Translational Genetics RIKEN Center for Integrative Medical Sciences Yokohama Japan Clinical Research Center Shizuoka General Hospital Shizuoka Japan The Department of Applied Genetics The School of Pharmaceutical Sciences University of Shizuoka Shizuoka Japan. Department of Medical Research China Medical University Hospital Taichung 404327 Taiwan. Department of Medical Research China Medical University Hospital China Medical University Taichung 404327 Taiwan. Graduate Institute of Biomedical Informatics College of Medical Science and Technology Taipei Medical University Taipei Taiwan. School of Chinese Medicine China Medical University Taichung Taiwan Department of Biotechnology and Bioinformatics Asia University Taichung Taiwan. Electronic address: d0704@mail.cmuh.org.tw.

Immunoglobulin E (IgE) synthessis is highly related to a variety of atopic diseases, and several genome-wide association studies (GWASs) have demonstrated the association between genes and IgE level. In this study, we conducted the largest genome-wide association study of IgE involving a Taiwanese Han population. Eight independent variants exhibited genome-wide significance. Among them, an intronic SNP of CD28, rs1181388, and an intergenic SNP, rs1002957030, on 11q23.2 were identified as novel signals for IgE. Seven of the loci were replicated successfully in a meta-analysis using data on Japanese population. Among all the human leukocyte antigen (HLA) regions, HLA-DQA1*03:02 - HLA-DQB1*03:03 was the most significant haplotype (OR = 1.25, SE = 0.02, FDR = 1.6 × 10), corresponding to HLA-DQA1 Asp160 and HLA-DQB1 Leu87 amino acid residues. The genetic correlation showed significance between IgE and allergic diseases including asthma, atopic dermatitis, and pollinosis. IgE PRS was significantly correlated with total IgE levels. Furthermore, the top decile IgE polygenic risk score (PRS) group had the highest risk of asthma for the Taiwan Biobank and Biobank Japan cohorts. IgE PRS may be used to aid in predicting the occurrence of allergic reactions before symptoms occur and biomarkers are detectable. Our study provided a more comprehensive understanding of the impact of genomic variants, including complex HLA alleles, on serum IgE levels.

关键词： Allergy genome-wide association study human leukocyte antigen immunoglobulin E

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Corrigendum to "Cross-sectional analysis of students and school workers reveals a high number of asymptomatic SARS-CoV-2 infections during school reopening in Brazilian cities" [Heliyon 8 (11) (November 2022) Article e11368]

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Heliyon 2023年第3期9卷 e14398页

作者： Lysandro P Borges Adriana G Guimarães Dennyson Leandro M Fonseca Paula P Freire Íkaro D C Barreto Daniela R V Souza Ricardo Q Gurgel Aline S A Lopes José Melquiades de Rezende Neto Kezia A Dos Santos Igor L S Matos Grazielly B da Invenção Brenda M Oliveira Aryanne A Santos Daniele Almeida Soares Pamela C de Jesus Cliomar A Dos Santos Marco A O Goes Desirée Rodrigues Plaça Igor Salerno Filgueiras Alexandre H C Marques Gabriela Crispim Baiocchi William CabralMiranda Gustavo Cabral de Miranda Niels Olsen Saraiva Camara Vera Lúcia Garcia Calich Rodrigo Nalio Ramos Helder I Nakaya Vanderson Rocha Lasse M Giil Hans D Ochs Lena F Schimke Mércia S F de Souza Luis E Cuevas Aline F Martins Otavio Cabral-Marques Department of Pharmacy Federal University of Sergipe São Cristóvão Sergipe Brazil. Interunit Postgraduate Program on Bioinformatics Institute of Mathematics and Statistics (IME) University of Sao Paulo (USP) Sao Paulo SP Brazil. Department of Immunology Institute of Biomedical Sciences University of São Paulo São Paulo SP Brazil. Nuclear and Energy Technology Graduate Program (UFPE) Recife Pernambuco Brazil. Department of Education in Health Lagarto and Post-graduate Program in Health Sciences Federal University of Sergipe Sergipe Brazil. Department of Medicine and Post-Graduate Programs in Parasitic Biology and Health Sciences Federal University of Sergipe Aracaju Sergipe Brazil. Sergipe Central Public Health Laboratory Aracaju Sergipe Brazil. State Health Department Sergipe Brazil. Department of Clinical and Toxicological Analyses School of Pharmaceutical Sciences University of São Paulo São Paulo SP Brazil. The Sabará Children's Hospital and PENSI Institute São Paulo SP Brazil. Laboratory of Medical Investigation in Pathogenesis and Directed Therapy in Onco-ImmunoHematology (LIM-31) Department of Hematology and Cell Therapy Hospital das Clínicas HCFMUSP Faculdade de Medicina University of São Paulo São Paulo Brazil. Instituto D'Or de Ensino e Pesquisa São Paulo Brazil. Hospital Israelita Albert Einstein São Paulo 05652-900 Brazil. Scientific Platform Pasteur University of São Paulo São Paulo 05508-020 Brazil. Fundação Pró-Sangue-Hemocentro de São Paulo São Paulo Brazil. Churchill Hospital Department of Hematology University of Oxford Oxford United Kingdom. Department of Internal Medicine Haraldsplass Deaconess Hospital Bergen Norway. Department of Pediatrics University of Washington School of Medicine And Seattle Children's Research Institute Seattle WA USA. Department of Clinical Sciences Liverpool School of Tropical Medicine Liverpool United Kingdom. Laboratory of Medical Investigation 29 University of São Paulo School of Medicine Brazil. D

[This corrects the article DOI: 10.1016/***.2022.e11368.].

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FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles

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Fungal Diversity 2020年第6期105卷 I0001-I0016页

作者： Sergei Põlme Kessy Abarenkov RHenrik Nilsson Björn D.Lindahl Karina Engelbrecht Clemmensen Havard Kauserud Nhu Nguyen Rasmus Kjøller Scott T.Bates Petr Baldrian Tobias Guldberg Frøslev Kristjan Adojaan Alfredo Vizzini Ave Suija Donald Pfister Hans-Otto Baral Helle Järv Hugo Madrid Jenni Nordén Jian-Kui Liu Julia Pawlowska Kadri Põldmaa Kadri Pärtel Kadri Runnel Karen Hansen Karl-Henrik Larsson Kevin David Hyde Marcelo Sandoval-Denis Matthew E.Smith Merje Toome-Heller Nalin N.Wijayawardene Nelson Menolli Jr Nicole K.Reynolds Rein Drenkhan Sajeewa S.N.Maharachchikumbura Tatiana B.Gibertoni Thomas Læssøe William Davis Yuri Tokarev Adriana Corrales Adriene Mayra Soares Ahto Agan Alexandre Reis Machado Andrés Argüelles-Moyao Andrew Detheridge Angelina de Meiras-Ottoni Annemieke Verbeken Arun Kumar Dutta Bao-Kai Cui C.K.Pradeep César Marín Daniel Stanton Daniyal Gohar Dhanushka N.Wanasinghe Eveli Otsing Farzad Aslani Gareth W.Griffith Thorsten H.Lumbsch Hans-Peter Grossart Hossein Masigol Ina Timling Inga Hiiesalu Jane Oja John Y.Kupagme József Geml Julieta Alvarez-Manjarrez Kai Ilves Kaire Loit Kalev Adamson Kazuhide Nara Kati Küngas Keilor Rojas-Jimenez Krišs Bitenieks Laszlo Irinyi LászlóGNagy Liina Soonvald Li-Wei Zhou Lysett Wagner M.Catherine Aime MaarjaÖpik María Isabel Mujica Martin Metsoja Martin Ryberg Martti Vasar Masao Murata Matthew PNelsen Michelle Cleary Milan C.Samarakoon Mingkwan Doilom Mohammad Bahram Niloufar Hagh-Doust Olesya Dulya Peter Johnston Petr Kohout Qian Chen Qing Tian Rajasree Nandi Rasekh Amiri Rekhani Hansika Perera Renata dos Santos Chikowski Renato L.Mendes-Alvarenga Roberto Garibay-Orijel Robin Gielen Rungtiwa Phookamsak Ruvishika S.Jayawardena Saleh Rahimlou Samantha C.Karunarathna Saowaluck Tibpromma Shawn P.Brown Siim-Kaarel Sepp Sunil Mundra Zhu-Hua Luo Tanay Bose Tanel Vahter Tarquin Netherway Teng Yang Tom May Torda Varga Wei Li Victor Rafael Matos Coimbra Virton Rodrigo Targino de Oliveira Vitor Xavier de Lima Vladimir S.Mikryukov Yongzhong Lu Yosuke Matsuda Yumiko Miyamoto Urm Institute of Ecology and Earth Sciences University of Tartu14A Ravila50411 TartuEstonia Natural History Museum University of Tartu46 Vanemuise Str51003 TartuEstonia Gothenburg Global Biodiversity Centre Box 46140530 GothenburgSweden Department of Biological and Environmental Sciences University of GothenburgGothenburgSweden Department of Soil and Environment Swedish University of Agricultural SciencesBox 701475007 UppsalaSweden Department of Forest Mycology and Plant Pathology Swedish University of Agricultural SciencesBox 702675007 UppsalaSweden Section for Genetics and Evolutionary Biology(EvoGene) Department of BiosciencesUniversity of OsloP.O.Box 1066BlindernNO-0316 OsloNorway University of Hawaiʻi at Mānoa 3190 Maile WaySt.John 102HonoluluHIUSA Department of Biology University of CopenhagenUniversitetsparken 152100 CopenhagenØDenmark Purdue University Northwest WestvilleIN 46391USA Institute of Microbiology Czech Academy of SciencesVidenska 108314220 Praha 4Czech Republic GLOBE Institute University of CopenhagenØster Farimagsgade 5KH7.2.321353 CopenhagenDenmark Dipartimento di Scienze della Vita e Biologia dei Sistemi Universitàdi TorinoViale Mattioli 2510125 TorinoItaly Department of Organismic and Evolutionary Biology and Farlow Library and Herbarium Harvard University22 Divinity AveCambridgeMA 02138USA Blaihofstr.42 72074 TübingenGermany SYNLAB Estonia Veerenni 53aTallinn 11313Estonia Escuela de Tecnología Médica Universidad Santo TomásLos Carreras 753OsornoChile Centro de Genómica y Bioinformática Universidad MayorCamino La Pirámide 5750HuechurabaSantiagoChile Norwegian Institute for Nature Research(NINA) Sognsveien 680855 OsloNorway School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Evolutionary Biology Faculty of BiologyBiological and Chemical Research CentreUniversity of Warsawul.Zwirki i Wigury 10102-089 WarsawPoland Department of Botany Swedish Museum of

The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental *** the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and ***,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains *** order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis *** the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,*** resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental *** order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS *** the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.

关键词： Fungal traits Trophic modes Function Guild Bioinformatics High-throughput sequencing Community ecology

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The eleven-item Alcohol, Smoking and Substance Involvement Screening Test (ASSIST-11): Cross-cultural psychometric evaluation across 42 countries

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Journal of Psychiatric Research 2023年第1期165卷 16-27页

作者： Lee, Chih-Ting Lin, Chung-Ying Koós, Mónika Nagy, Léna Kraus, Shane W. Demetrovics, Zsolt Potenza, Marc N. Ballester-Arnal, Rafael Batthyány, Dominik Bergeron, Sophie Billieux, Joël Burkauskas, Julius Cárdenas-López, Georgina Carvalho, Joana Castro-Calvo, Jesús Chen, Lijun Ciocca, Giacomo Corazza, Ornella Csako, Rita I. Fernandez, David P. Fernandez, Elaine F. Fujiwara, Hironobu Fuss, Johannes Gabrhelík, Roman Gewirtz-Meydan, Ateret Gjoneska, Biljana Gola, Mateusz Grubbs, Joshua B. Hashim, Hashim T. Islam, Md. Saiful Ismail, Mustafa Jiménez-Martínez, Martha Jurin, Tanja Kalina, Ondrej Klein, Verena Költő, András Lee, Sang-Kyu Lewczuk, Karol Lochner, Christine López-Alvarado, Silvia Lukavská, Kateřina Mayta-Tristán, Percy Milea, Ionut Miller, Dan J. Orosová, Oľga Orosz, Gábor Ponce, Fernando P. Quintana, Gonzalo R. Garzola, Gabriel C.Quintero Ramos-Diaz, Jano Rigaud, Kévin Rousseau, Ann Scanavino, Marco De Tubino Schulmeyer, Marion K. Sharan, Pratap Shibata, Mami Shoib, Sheikh Sigre-Leirós, Vera Sniewski, Luke Spasovski, Ognen Steibliene, Vesta Stein, Dan J. Strizek, Julian Ünsal, Berk C. Vaillancourt-Morel, Marie-Pier Van Hout, Marie Claire Bőthe, Beáta Department of Family Medicine National Cheng Kung University Hospital College of Medicine National Cheng Kung University Tainan Taiwan Institute of Allied Health Sciences College of Medicine National Cheng Kung University Tainan Taiwan Biostatistics Consulting Center National Cheng Kung University Hospital College of Medicine National Cheng Kung University Tainan Taiwan Doctoral School of Psychology ELTE Eötvös Loránd University Budapest Hungary Institute of Psychology ELTE Eötvös Loránd University Budapest Hungary Department of Psychology University of Nevada Las Vegas Las Vegas NV United States Centre of Excellence in Responsible Gaming University of Gibraltar Gibraltar Gibraltar Yale University School of Medicine New Haven CT United States Connecticut Council on Problem Gambling Wethersfield CT United States Departmento de Psicología Básica Clínica y Psicobiología University Jaume I of Castellón Spain Institute for Behavioural Addictions Sigmund Freud University Vienna Austria Département de Psychologie Université de Montréal Montréal Canada Institute of Psychology University of Lausanne Lausanne Switzerland Center for Excessive Gambling Addiction Medicine Lausanne University Hospitals (CHUV) Lausanne Switzerland Laboratory of Behavioral Medicine Neuroscience Institute Lithuanian University of Health Sciences Lithuania Virtual Teaching and Cyberpsychology Laboratory School of Psychology National Autonomous University of Mexico Mexico William James Center for Research Departamento de Educação e Psicologia Universidade de Aveiro CPUP: Center for Psychology at Porto University Aveiro Portugal Department of Personality Assessment and Psychological Treatments University of Valencia Spain Department of Psychology College of Humanity and Social Science Fuzhou University China Section of Sexual Psychopathology Department of Dynamic and Clinical Psychology and Health Studies Sapienza University of Rome Rome Italy Department of Clinical Pharmaceuti

The Alcohol, Smoking and Substance Involvement Screening Test (ASSIST) is an instrument to screen substance-use-related health risks. However, little is known whether the ASSIST could be further shortened while remaining psychometrically sound across different countries, languages, gender identities, and sexual-orientation-based groups. The study aimed to validate a shortened 11-item ASSIST (ASSIST-11). Using the International Sex Survey data, 82,243 participants (M _age = 32.39 years) across 42 countries and 26 languages completed questions from the ASSIST-11 regarding gender identity, sexual orientation, and other information. Confirmatory factor analysis (CFA) and multigroup CFA (MGCFA) evaluated the ASSIST-11's structure and tested measurement invariance across groups. Cronbach's α and McDonald's ω were used to examine the internal consistency. Cohen's d and independent t-tests were used to examine known-group validity. The ASSIST-11 was unidimensional across countries, languages, age groups, gender identities (i.e., men, women, and gender-diverse individuals), and sexual orientations (i.e., heterosexual and sexual minority individuals). Cronbach's α was 0.63 and McDonald's ω was 0.68 for the ASSIST-11. Known-group validity was supported by Cohen's d (range between 0.23 and 0.40) with significant differences (p-values<0.001). The ASSIST-11 is a modified instrument with a unidimensional factor structure across different languages, age groups, countries, gender identities, and sexual orientations. The low internal consistency of the ASSIST-11 might be acceptable as it assesses a broad concept (i.e., use of several different substances). Healthcare providers and researchers may use the ASSIST-11 to quickly assess substance-use information from general populations and evaluate the need to follow up with more detailed questions about substance use. © 2023 Elsevier Ltd

关键词： Addictive behaviors Cross-cultural study Factor structure Measurement invariance Psychometrics

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FANTOM5 CAGE profiles of human and mouse samples

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Scientific Data 2017年第1期4卷 1-10页

作者： Noguchi, Shuhei Arakawa, Takahiro Fukuda, Shiro Furuno, Masaaki Hasegawa, Akira Hori, Fumi Ishikawa-Kato, Sachi Kaida, Kaoru Kaiho, Ai Kanamori-Katayama, Mutsumi Kawashima, Tsugumi Kojima, Miki Kubosaki, Atsutaka Manabe, Ri-Ichiroh Murata, Mitsuyoshi Nagao-Sato, Sayaka Nakazato, Kenichi Ninomiya, Noriko Nishiyori-Sueki, Hiromi Noma, Shohei Saijyo, Eri Saka, Akiko Sakai, Mizuho Simon, Christophe Suzuki, Naoko Tagami, Michihira Watanabe, Shoko Yoshida, Shigehiro Arner, Peter Axton, Richard A. Babina, Magda Kenneth Baillie, J. Barnett, Timothy C. Beckhouse, Anthony G. Blumenthal, Antje Bodega, Beatrice Bonetti, Alessandro Briggs, James Brombacher, Frank Carlisle, Ailsa J. Clevers, Hans C. Davis, Carrie A. Detmar, Michael Dohi, Taeko Edge, B. Albert S. Edinger, Matthias Ehrlund, Anna Ekwall, Karl Endoh, Mitsuhiro Enomoto, Hideki Eslami, Afsaneh Fagiolini, Michela Fairbairn, Lynsey Farach-Carson, Mary C. Faulkner, Geoffrey J. Ferrai, Carmelo Fisher, Malcolm E. Forrester, Lesley M. Fujita, Rie Furusawa, Jun-Ichi Geijtenbeek, Teunis B. Gingeras, Thomas Goldowitz, Daniel Guhl, Sven Guler, Reto Gustincich, Stefano Ha, Thomas J. Hamaguchi, Masahide Hara, Mitsuko Hasegawa, Yuki Herlyn, Meenhard Heutink, Peter Hitchens, Kelly J. Hume, David A. Ikawa, Tomokatsu Ishizu, Yuri Kai, Chieko Kawamoto, Hiroshi Kawamura, Yuki I. Kempfle, Judith S. Kenna, Tony J. Kere, Juha Khachigian, Levon M. Kitamura, Toshio Klein, Sarah Peter Klinken, S. Knox, Alan J. Kojima, Soichi Koseki, Haruhiko Koyasu, Shigeo Lee, Weonju Lennartsson, Andreas MacKay-Sim, Alan Mejhert, Niklas Mizuno, Yosuke Morikawa, Hiromasa Morimoto, Mitsuru Moro, Kazuyo Morris, Kelly J. Motohashi, Hozumi Mummery, Christine L. Nakachi, Yutaka Nakahara, Fumio Nakamura, Toshiyuki Nakamura, Yukio Nozaki, Tadasuke Ogishima, Soichi Ohkura, Naganari Ohno, Hiroshi Ohshima, Mitsuhiro Okada-Hatakeyama, Mariko Okazaki, Yasushi Orlando, Valerio Ovchinnikov, Dmitry A. Passier, Robert Patrikakis, Margaret Pombo, Ana Pradhan-Bhatt, Swati Qin, Xian-Yang Rehli, Michael Rizzu, Patrizia Roy, S Division of Genomic Technologies RIKEN Center for Life Science Technologies Yokohama Kanagawa 230-0045 Japan RIKEN Omics Science Center Yokohama Kanagawa 230-0045 Japan Department of Medicine Karolinska Institutet Stockholm 14186 Sweden Karolinska University Hospital Center for Metabolism and Endocrinology Stockholm 14186 Sweden Scottish Centre for Regenerative Medicine University of Edinburgh 5 Little France Drive Edinburgh EH164UU United Kingdom Department of Dermatology and Allergy Charite University Medicine Berlin Charitéplatz 1 Berlin 10117 Germany Roslin Institute and Royal School of Veterinary Studies University of Edinburgh Edinburgh EH259RG United Kingdom Australian Infectious Diseases Research Centre University of Queensland St Lucia 4072 QLD Australia School of Chemistry and Molecular Biosciences University of Queensland St Lucia 4072 QLD Australia Bio-Rad Laboratories Pty Ltd Hercules 94547 CA United States University of Queensland Diamantina Institute University of Queensland Woolloongabba 4102 QLD Australia IRCCS Fondazione Santa Lucia Via del Fosso di Fiorano 64 Rome 00143 Italy Australian Institute for Bioengineering and Nanotechnology University of Queensland Brisbane St Lucia 4072 QLD Australia Division of Immunology Institute of Infectious Diseases and Molecular Medicine University of Cape Town Anzio Road Observatory 7925 South Africa Immunology of Infectious Diseases Faculty of Health Sciences South African Medical Research Council University of Cape Town Anzio Road 7925 South Africa International Centre for Genetic Engineering and Biotechnology Cape Town Component Anzio Road 7925 South Africa Hubrecht Institute Royal Netherlands Academy of Arts and Sciences Uppsalalaan 8 3584 Netherlands University Medical Centre Utrecht Postbus 85500 Utrecht 3508 Netherlands Genomics Cold Spring Harbor Laboratory Cold Spring Harbor New York 11797 NY United States Institute of Pharmaceutical Sciences ETH Zurich Vladi

In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consisting of a variety of primary cells, tissues, cell lines, and time series samples during cell activation and development, were subjected to a uniform pipeline of CAGE data production. The analysis pipeline started by measuring RNA extracts to assess their quality, and continued to CAGE library production by using a robotic or a manual workflow, single molecule sequencing, and computational processing to generate frequencies of transcription initiation. Resulting data represents the consequence of transcriptional regulation in each analyzed state of mammalian cells. Non-overlapping peaks over the CAGE profiles, approximately 200,000 and 150,000 peaks for the human and mouse genomes, were identified and annotated to provide precise location of known promoters as well as novel ones, and to quantify their activities.

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Global cross-cultural validation of a brief measure for identifying potential suicide risk in 42 countries

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Public Health 2024年 229卷 13-23页

作者： Gewirtz-Meydan, A. Koós, M. Nagy, L. Kraus, S.W. Demetrovics, Z. Potenza, M.N. Ballester-Arnal, R. Batthyány, D. Bergeron, S. Billieux, J. Burkauskas, J. Cárdenas-López, G. Carvalho, J. Castro-Calvo, J. Chen, L. Ciocca, G. Corazza, O. Csako, R. Fernandez, D.P. Fujiwara, H. Fernandez, E.F. Fuss, J. Gabrhelík, R. Gjoneska, B. Gola, M. Grubbs, J.B. Hashim, H.T. Islam, M.S. Ismail, M. Jiménez-Martínez, M.C. Jurin, T. Kalina, O. Klein, V. Költő, A. Lee, S.-K. Lewczuk, K. Lin, C.-Y. Lochner, C. López-Alvarado, S. Lukavská, K. Mayta-Tristán, P. Miller, D.J. Orosová, O. Orosz, G. Ponce, F.P. Quintana, G.R. Quintero Garzola, G.C. Ramos-Diaz, J. Rigaud, K. Rousseau, A. De Tubino Scanavino, M. Schulmeyer, M.K. Sharan, P. Shibata, M. Shoib, S. Sigre-Leirós, V. Sniewski, L. Spasovski, O. Steibliene, V. Stein, D.J. Strong, C. Ünsal, B.C. Vaillancourt-Morel, M.-P. Van Hout, M.C. Bőthe, B. School of Social Work Faculty of Social Welfare and Health Sciences University of Haifa Israel Institute of Psychology ELTE Eötvös Loránd University Budapest Hungary Institute of Forensic Psychiatry and Sex Research University of Duisburg-Essen Essen Germany Doctoral School of Psychology ELTE Eötvös Loránd University Budapest Hungary Department of Psychology University of Nevada Las Vegas Las Vegas NV United States Centre of Excellence in Responsible Gaming University of Gibraltar Gibraltar Gibraltar Yale University School of Medicine New Haven CT United States Connecticut Council on Problem Gambling Wethersfield CT United States Departmento de Psicología Básica Clínica y Psicobiología University Jaume I of Castellón Spain Institute for Behavioural Addictions Sigmund Freud University Vienna Austria Département de Psychologie Université de Montréal Montréal Canada Institute of Psychology University of Lausanne Lausanne Switzerland Center for Excessive Gambling Addiction Medicine Lausanne University Hospitals (CHUV) Lausanne Switzerland Laboratory of Behavioral Medicine Neuroscience Institute Lithuanian University of Health Sciences Lithuania Virtual Teaching and Cyberpsychology Laboratory School of Psychology National Autonomous University of Mexico Mexico William James Center for Research Departamento de Educação e Psicologia Universidade de Aveiro Aveiro Portugal Department of Personality Assessment and Psychological Treatments University of Valencia Spain Department of Psychology College of Humanity and Social Science Fuzhou University China Section of Sexual Psychopathology Department of Dynamic and Clinical Psychology and Health Studies Sapienza University of Rome Rome Italy Department of Clinical Pharmaceutical and Biological Sciences University of Hertfordshire United Kingdom Department of Psychology and Cognitive Science University of Trento Italy Department of Psychology and Neuroscience Auckland University of Technology Auckland New Z

Objectives: This study aimed to examine the psychometric properties of the P4 suicide screener in a multinational sample. The primary goal was to evaluate the reliability and validity of the scale and investigate its convergent validity by analyzing its correlation with depression, anxiety, and substance use. Study design: The study design is a cross-sectional self-report study conducted across 42 countries. Methods: A cross-sectional, self-report study was conducted in 42 countries, with a total of 82,243 participants included in the final data set. Results: The study provides an overview of suicide ideation rates across 42 countries and confirms the structural validity of the P4 screener. The findings indicated that sexual and gender minority individuals exhibited higher rates of suicidal ideation. The P4 screener showed adequate reliability, convergence, and discriminant validity, and a cutoff score of 1 is recommended to identify individuals at risk of suicidal behavior. Conclusions: The study supports the reliability and validity of the P4 suicide screener across 42 diverse countries, highlighting the importance of using a cross-cultural suicide risk assessment to standardize the identification of high-risk individuals and tailoring culturally sensitive suicide prevention strategies. © 2024 The Royal Society for Public Health

关键词： Assessment Cross-cultural Suicide Validation

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