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Indonesian Agricultural-crops Classification Using Transfer Learning Model

Procedia computer science 2023年 227卷 128-136页

作者： Mahmud Isnan Alam Ahmad Hidayat Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta 11480 Indonesia Department of Mathematics School of Computer Science Bina Nusantara University Jakarta 11480 Indonesia Computer Science Department BINUS Graduate Program – Master of Computer Science Program Bina Nusantara University Jakarta 11480 Indonesia

Classification of Indonesian crops is a critical task in developing farming and getting more understanding of agriculture. However, there is no clear task in classifying types of crops in Indonesia. Transfer learning has been used successfully in a variety of image classification applications. Thus, in this paper, we collected images of Indonesian crops from the internet randomly and proposed a classification by using transfer learning of deep learning with four pre-trained models: EffficientNet- B0, ResNet18, VGG19, and AlexNet. In the experiment, augmentation techniques such as random horizontal flip, random vertical flip, and random affine were utilized to prevent the network from overfitting. The result found that EfficientNet-B0 outperformed other models with an accuracy of 82.55. Then, the model struggled to distinguish between crops in the same family. According to the results, although transfer learning can work well to classify images of Indonesian agricultural crops, some improvements are still required to address existing issues.

关键词： Agriculture Classification Crop Deep Learning Transfer learning

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Count-Data Mixed Models of Topical Tweets: A Case of Indonesia Flood Events

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Procedia computer science 2023年 227卷 805-812页

作者： Alam Ahmad Hidayat Bens Pardamean Mathematics Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program – Master of Computer Science Program Bina Nusantara University Jakarta Indonesia 11480

Examining topic-level variability in modeling Twitter data can potentially yield more comprehensive insights into public perception during critical periods, thereby enhancing natural disaster mitigation and surveillance efforts. In this study, we utilized generalized linear mixed models (GLMMs) to illustrate the variability in tweet counts related to specific topics in Indonesia during the flood events that occurred in February 2021. The glmmTMB library in R was employed for this purpose. The data were assumed to follow two distinct exponential distributions: Poisson and Negative Binomial. To incorporate random effects, random intercepts and random slopes were introduced, allowing them to vary randomly across topics in the initial two models. Additionally, the final model addressed issues related to dispersion and zero-inflation. By evaluating the Akaike Information Criteria scores, we determined that a model based on the Negative Binomial distribution with random zero-inflation intercepts best fit the data. The chosen model formulation and the estimated parameters have the potential to forecast topic-specific trends in Indonesian flood-related Twitter data.

关键词： count data disaster surveillance floods mixed models Twitter

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Exploring 3D Reconstruction with Drone Images: Advances and Challenges in Urban Environments 50

Exploring 3D Reconstruction with Drone Images: Advances and ...

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50th Annual Conference of the IEEE Industrial Electronics Society, IECON 2024

作者： Miranda Baldivieso, Thiago João da Silva Batista, Taise Grazielle Chagas, Fabio Suim Rodrigues Velho, Luiz Carlos Pacheco Ferreira Rosa, Paulo Fernando Defense Engineering Graduate Program Military Institute of Engineering Rio de Janeiro Brazil State Institute of the Environment Inea RJ Rio de Janeiro Brazil Department of Science and Industry systems University of South-Eastern Norway Kongsberg Norway Department of Computer Graphics Institute for Pure and Applied Mathematics Rio de Janeiro Brazil Electrical Engineering Graduate Program Military Institute of Engineering Rio de Janeiro Brazil

ISBN: (纸本)9781665464543

This working-in-progress paper aims to present a three-dimensional reconstruction using aerial images in different environments. The experiments were conducted with aircraft in both external and internal settings, starting with image acquisition, followed by the application of specific photogrammetry software-both commercial and open-source-and concluding with a qualitative evaluation of the results. © 2024 IEEE.

关键词： Aerial photography

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Data Mining and Bioinformatics Approaches to Elucidate Bacterial Communities in the Extreme Environment

Data Mining and Bioinformatics Approaches to Elucidate Bacte...

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2023 International Conference on Informatics, Multimedia, Cyber and Information Systems, ICIMCIS 2023

作者： Trinugroho, Joko Pebrianto Hidayat, Alam Ahmad Nirwantono, Rudi Asadi, Faisal Pardamean, Bens Bina Nusantara University Bioinformatics and Data Science Research Center Jakarta11480 Indonesia Bina Nusantara University School of Computer Science Bioinformatics and Data Science Research Center Mathematics Department Jakarta11480 Indonesia Bina Nusantara University Faculty of Engineering Bioinformatics and Data Science Research Center Biotechnology Department Jakarta11480 Indonesia Bina Nusantara University School of Computer Science Bioinformatics and Data Science Research Center Computer Science Department Jakarta11480 Indonesia Bina Nusantara University Binus Graduate Program Computer Science Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9798350307306

Bacteria are microscopic organisms that can be found in many environments. They are abundant and have many roles in our life. Studying bacteria is essential so that we can identify the bacteria that are needed for many industrial applications. However, the main problem is that majority of the bacteria are unculturable, hampering the exploration of bacteria from different environments. Metagenomics approach which employs Next Generation Sequencing technology could help study bacteria by utilizing 16S rRNA marker gene. This study aims to demonstrate data mining and bioinformatics approaches to analyze 16S rRNA sequencing data. The raw sequencing data of 16S rRNA was collected from biological database. Then, the data were trimmed, denoised, and clustered to generate Amplicon Sequence Variants (ASVs). Diversity (alpha and beta) and taxonomic analyses were then conducted to elucidate the bacterial diversity and taxonomic profile of ASVs. The results of this work showed that Shannon and PD indices in China's hot spring were higher than Singapore and the USA. Furthermore, a significant difference was observed in the PD index. The unweighted UniFrac distance also showed there was a significant difference of the bacterial communities between the three locations. In addition, the taxonomic investigation unveiled prevalent bacterial groups in the ecosystem, namely Proteobacteria, Chloroflexi, Cyanobacteria, and Crenarchaeota. The research outcomes have the potential to serve as a foundational resource for subsequent bacterial metagenomic research, particularly the hot spring environment. © 2023 IEEE.

关键词： Bacteria

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A Bioinformatics Analysis and Homology 3D Modeling of Dihydroxy-orotate-dehydrogenase of Plasmodium ovale

A Bioinformatics Analysis and Homology 3D Modeling of Dihydr...

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2023 International Conference on Informatics, Multimedia, Cyber and Information Systems, ICIMCIS 2023

作者： Nirwantono, Rudi Assidqi, Khoirunnisa Hidayat, Alam Ahmad Pebrianto Trinugroho, Joko Pardamean, Bens Bina Nusantara University Faculty of Engineering Bioinformatics and Data Science Research Center Biotechnology Department Jakarta11480 Indonesia Bina Nusantara University Faculty of Engineering Food Biotechnology Research Center Biotechnology Department Jakarta11480 Indonesia Bina Nusantara University School of Computer Science Bioinformatics and Data Science Research Center Mathematics Departement Jakarta11480 Indonesia Bina Nusantara University Bioinformatics and Data Science Research Center Jakarta11480 Indonesia Bina Nusantara University Binus Graduate Program - Computer Science Program Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9798350307306

The infection of Plasmodium vivax is relatively less virulent than the deathliest Plasmodium falciparum. However, it still can lead to a fatal case and often induces recurring malaria due to dormant parasites in the liver. Thus, the research to study the drug to treat Plasmodium vivax is essential, where the enzyme dihydroorotate dehydrogenase (DHODH) has recently become a new drug target. However, the drug-enzyme interaction study has only recently been conducted in Plasmodium falciparum (pfDHODH) due to the lack of the 3D structure of enzyme DHODH from Plasmodium vivax that is crucial for the study. Therefore, this study aimed to perform the modelling study of Plasmodium vivax DHODH (PvDHODH) to create a 3D structure as a basis for drug-protein interaction study in upcoming studies. Sequence pvDHODH (Accession: SCO68359.1) was used in homology modelling using Modeller 10.2 with the crystal structure of DHODH from DHODH (Accession: 7KZY) as a template. Overall, the model generated from the homology modelling was considered a good model, and the 3D structure was close to the native state according to several parameters, including DOPE score, GA341 score, QMEAN4 value, 3D-1D score, ERRAT2 score, and ProSA score. Ramachandran plot also revealed that almost all amino acids were distributed in the desirable and allowed area (99.1%), and only 0.9% were in generously allowed regions. Superimposition of the model with the template also indicated that the model has an almost similar structure and amino acids positioning, including in the binding pocket and active site. Therefore, the model can be used for downstream analysis in drug-protein interaction studies. Nevertheless, some improvements can still be performed to upgrade the quality of the model by deleting unaligned residues on the C-terminal and realigning the residues at the doubting site. © 2023 IEEE.

关键词： Amino acids

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Ontology-Driven IoT System for Monitoring Hypertension 25

Ontology-Driven IoT System for Monitoring Hypertension

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25th International Conference on Enterprise Information Systems, ICEIS 2023

作者： de Souza, Pedro Lopes de Souza, Wanderley Lopes Pires, Luís Ferreira Moreira, João Luiz Rebelo da Silva Rodrigues, Ronitti Juner Ciferri, Ricardo Rodrigues Semantics Cybersecurity & Services Group Faculty of Electrical Engineering Mathematics and Computer Science University of Twente P.O. Box 217 Enschede Netherlands Ubiquitous Computing Group Graduate Program in Computer Science Computing Department Federal University of São Carlos P.O. Box 676 São Carlos Brazil

ISBN: (纸本)9789897586484

Hypertension is a noncommunicable disease (NCD) that causes global concern, high costs and a high number of deaths. Internet of Things, Ubiquitous Computing, and Cloud Computing enable the development of systems for remote and real-time monitoring of patients affected with NCDs like hypertension. This paper reports on a system for monitoring hypertension patients that was built by employing these techniques. This system allows the vital signs of a patient (blood pressure, heart rate, body temperature) to be captured via sensors built in a wearable device similar to a wristwatch. These signals are transmitted to the patient's mobile device for processing, and the generated clinical data are sent to the cloud to be properly presented and analysed by the health professionals responsible for the patient. To deal with semantic interoperability issues that arise when multiple different devices and system components must interoperate, a semantic model was conceived for this system in terms of ontologies for diseases and devices. This paper also presents the semantic module that we developed and implemented in the cloud to perform reasoning based on this model, demonstrating the potential benefits of incorporating semantic technologies in our system. Copyright © 2023 by SCITEPRESS - science and Technology Publications, Lda. Under CC license (CC BY-NC-ND 4.0)

关键词： Ontology

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Long Short-Term Memory-based Models for Sleep Quality Prediction from Wearable Device Time Series Data

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Procedia computer science 2023年 227卷 1062-1069页

作者： Alam Ahmad Hidayat Arif Budiarto Bens Pardamean Mathematics Department School of Computer Science Bina Nusantara University Jakarta 11480 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta 11480 Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta 11480 Indonesia Computer Science Department BINUS Graduate Program – Master of Computer Science Program Bina Nusantara University Jakarta 11480 Indonesia

Several studies suggest that sleep quality is associated with physical activities. Moreover, deep sleep time can be used to determine the sleep quality of an individual. In this work, we aim to find the association between physical activities and deep sleep time by modeling the time series data such as heart rate and a number of steps captured from a commercial wearable device. Our previous study demonstrates that deep learning-based time series modeling is well suited for our problem since the temporal patterns in the two physical parameters need to be captured to obtain more accurate results. We first preprocess our series data to have a time-step size of 10 minutes. To improve our previous effort in this modeling, we compare four different variants of Long Short-Term Memory (LSTM)-based models, ranging from single input to dual input models. Our result shows that the simple stacked LSTM model performs better for our data because the remaining models suffer from overfitting due to a larger number of the trained parameters.

关键词： deep learning forecasting sleep quality time series wearable devices

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Analysis of Enterprise Architecture Research Trends for Higher Education Institutions Using Systematic Literature Review and Vos Viewer

Analysis of Enterprise Architecture Research Trends for High...

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Informatics Engineering, science & Technology (INCITEST), International Conference on

作者： Yudistira Soegoto Harjanto Prabowo Harco L H Spits Warnars Agung Trisetyarso Computer Science Departemen BINUS Graduate Program Doctor Computer Science - School of Computer Science Bina Nusantara University Jakarta Indonesia Mathematics Departement School Of Computer Sicence Bina Nusantara University Jakarta Indoensia

Enterprise Architecture Framework (EAF) is a commonly used framework and the best solution for addressing and defining the transformation that needs to be built to support business operations. To be able to make the transition quickly, many higher education institutions (HEIs) are starting to adopt EAF. This research aims to help the evolution and transpiration of enterprise architecture research in higher education. This research uses a systematic literature review (SLR) research method which includes several steps, namely identifying research questions, identifying research sources, using keywords to complete the data discovery process, disseminating data, and analyzing the results to answer research questions. The data used comes from digital libraries, especially Emerald Insight, IEEE Xplore Digital Library, and science Direct. Data taken from 2019 to 2023 in RIS format will then be analyzed and visualized using VosViewer. The results of this research are to find the growth of research publications over five years, find research trends on enterprise architecture frameworks, identify relationships between scientific concepts, and determine the knowledge network of enterprise architecture frameworks based on keywords.

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Aggregating Structural Features for Computational Analysis of Mutations in BRCT Domains of BRCA1 Protein

Aggregating Structural Features for Computational Analysis o...

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2023 International Conference on Informatics, Multimedia, Cyber and Information Systems, ICIMCIS 2023

作者： Hidayat, Alam Ahmad Nirwantono, Rudi Isnan, Mahmud Trinugroho, Joko Pebrianto Pardamean, Bens Bina Nusantara University School of Computer Science Bioinformatics and Data Science Research Center Mathematics Department Jakarta11480 Indonesia Bina Nusantara University Faculty of Engineering Bioinformatics and Data Science Research Center Biotechnology Department Jakarta11480 Indonesia Bina Nusantara University Bioinformatics and Data Science Research Center Jakarta11480 Indonesia Binus Graduate Program Bioinformatics and Data Science Research Center Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9798350307306

Understanding the mechanistic interpretability of mutation effects in a protein can help predict the clinical implications of the genetic variants. Hence, computational variant effect predictions that involve protein structural features of the protein mutations might be suitable in this case. In this work, we focus on BRCT domains of BRCA1 gene that is widely studied in breast cancer studies. We retrieved 88 selected missense variants found in BRCT domains annotated in both ClinVar and gnomAD databases. To computationally characterize the pathogenic property of the mutations we used two types of features extracted from protein structures: a change in free Gibbs energy and a set of features derived from molecular dynamics simulations of each mutant. Using a dimensional reduction and Gaussian mixture model (GMM)-based clustering we demonstrate that the variants are segregated into two regions that may correspond to their pathogenic status. This method can be a potential computational pipeline for providing the preliminary mechanistic interpretation of mutation effects in terms of their thermodynamic and structural features. © 2023 IEEE.

关键词： Proteins

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Development of Key Performance Indicators in e-Learning Implementation in Higher Education Institutions 8

Development of Key Performance Indicators in e-Learning Impl...

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8th International Conference on Information Management and Technology, ICIMTech 2023

作者： Sardjono, Wahyu Kristin, Desi Maya Putra, Gustian Rama Binus Graduate Program - Master of Information Systems Management Bina Nusantara University Information Systems Management Department Jakarta11480 Indonesia School of Information Systems Bina Nusantara University Information Systems Department Jakarta11480 Indonesia Pakuan University Computer Science Study Program Faculty of Mathematics & Natural Sciences Bogor Indonesia

ISBN: (纸本)9798350326093

Companies or organizations usually use key performance indicators (KPI) as indicators to determine their performance. The company's performance achievements are reflected in the set indicators that will describe the overall performance, as well as higher education institutions can also set key performance indicators, to see their performance achievements. The use of e-learning as a tool to support teaching and learning processes to be more effective and efficient is an example of which performance needs to be measured. This article discusses how the process of developing key performance indicators is carried out through the stages of designing questionnaires and distributing questionnaires to students, data is processed using the method of factor analysis to obtain the main indicators determining performance and the method of regression analysis is also used to build performance models. obtain KPI determinants, and then develop KPI models. The results show that there are indicators of sharing knowledge, managing knowledge, understanding knowledge, and utilization knowledge as performance measurement indicators. © 2023 IEEE.

关键词： Regression analysis

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