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TaxDiff: taxonomic-guided diffusion model for protein sequence generation

science China(Information sciences) 2025年第4期68卷 385-386页

作者： Zongying LIN Hao LI Liuzhenghao LV Yu WANG Bin LIN Junwu ZHANG Zijun CHEN Calvin Yu-Chian CHEN Li YUAN Yonghong TIAN School of Electronic and Computer Engineering Peking University AI for Science (AI4S)-Preferred Program Peking University Shenzhen Graduate School Peng Cheng Laboratory School of Chemical Biology and Biotechnology Peking University

Protein design aims to generate protein variants with targeted biological functions, which is significant in multiple biological areas, including enzyme reaction catalysis, vaccine design, and fluorescence intensity. Protein design contains two paradigms: sequence generation and structure generation. Recently, EvoDiff [1] proposed a universal designing paradigm, combining structure and sequence generation using the diffusion framework, which improves the protein design efficiency.

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QoE Comparison between Multi-User OFDMA and Reliable Groupcast for Wireless LAN Audiovisual Transmission

QoE Comparison between Multi-User OFDMA and Reliable Groupca...

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2024 IEEE Region 10 Symposium, TENSYMP 2024

作者： Deguchi, Daiki Nunome, Toshiro Graduate School of Engineering Nagoya Institute of Technology Computer Science Program Department of Engineering Nagoya466-8555 Japan

ISBN: (纸本)9798350364866

This paper compares video and audio QoE of OFDMA multi-user transmission and reliable groupcast over wireless LAN. We assume video and audio transmission to several terminals simultaneously. As a reliable groupcast method, we employ Unsolicited Retry, a technique of IEEE 802.11aa GroupCast with Retries. We utilize IEEE 802.11ax for OFDMA transmission. We evaluate application-level QoS by computer simulation. We then assess QoE through a subjective experiment with video and audio streams generated by the output timing obtained from the simulation. We notice that each method has a situation to be applied appropriately. © 2024 IEEE.

关键词： Orthogonal frequency division multiplexing

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MPEG-DASH Multi-View Video and Audio Transmission QoE Over HTTP/2 Stream

MPEG-DASH Multi-View Video and Audio Transmission QoE Over H...

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2024 International Conference on Advanced Technologies for Communications, ATC 2024

作者： Wakayama, Yamato Nunome, Toshiro Graduate School of Engineering Nagoya Institute of Technology Computer Science Program Department of Engineering Nagoya466-8555 Japan

ISBN: (纸本)9798350353983

In this paper, we consider multi-view video and audio streaming using MPEG-DASH, which enables to transmit video tailored to the network conditions over HTTP communication. This paper uses HTTP/2 instead of HTTP/1.1, which the authors previously used. HTTP/2 manages a series of request-response exchanges called a stream, which is assigned a unique stream ID. We perform a subjective experiment under various network conditions to evaluate application-level QoS and QoE. From the evaluation results, we investigate the effect of the HTTP/2 stream on the video and audio quality of the users in the multi-view video transmission scenario. © 2024 IEEE.

关键词： Audio streaming

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Design of an Automatic Price Tag System for Web-Based Retail Business 9

Design of an Automatic Price Tag System for Web-Based Retail...

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9th International Conference on Information Management and Technology, ICIMTech 2024

作者： Liawatimena, Suryadiputra Gunawan, Devina Bina Nusantara University Automotive & Robotics Program Computer Engineering Department BINUS ASO School of Engineering Computer Science Deparment BINUS Graduate Program Master of Computer Science Jakarta11480 Indonesia Bina Nusantara University Automotive & Robotics Program Computer Engineering Department BINUS ASO School of Engineering Jakarta11480 Indonesia

ISBN: (纸本)9798350390025

Modern retail businesses face a significant challenge with the inefficiency of manually changing price labels on shelves. This manual process not only consumes valuable time and resources but also increases the likelihood of errors, leading to potential inaccuracies in pricing and a less streamlined shopping experience for customers. The proposed solution is the implementation of an Electronic Shelf Label (ESL) system that automatically displays the prices of goods on retail business shelves. This system connects a website (front end and back end) to e-paper via a Wi-Fi network and microcontroller, allowing retail business owners to update prices more easily. Additionally, buyers can search for desired items through the website. The results are the time to send data from the website to the e-paper, namely, to know the performance of the e-paper used. The average time required from 10 attempts to send data from the website to the e-paper is 20.935 seconds. Since the data is connected to the server and will be updated automatically, using this system will be more efficient than manually changing the price label, although it takes time to transfer data from the website to the e-paper. © 2024 IEEE.

关键词： Sales

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Jointprop: Joint Semi-supervised Learning for Entity and Relation Extraction with Heterogeneous Graph-based Propagation 61

Jointprop: Joint Semi-supervised Learning for Entity and Rel...

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61st Annual Meeting of the Association for Computational Linguistics, ACL 2023

作者： Yandan, Zheng Anran, Hao Tuan, Luu Anh School of Computer Science and Engineering Interdisciplinary Graduate Program-HealthTech Nanyang Technological University Singapore

ISBN: (纸本)9781959429722

Semi-supervised learning has been an important approach to address challenges in extracting entities and relations from limited data. However, current semi-supervised works handle the two tasks (i.e., Named Entity Recognition and Relation Extraction) separately and ignore the cross-correlation of entity and relation instances as well as the existence of similar instances across unlabeled data. To alleviate the issues, we propose Jointprop, a Heterogeneous Graph-based Propagation framework for joint semi-supervised entity and relation extraction, which captures the global structure information between individual tasks and exploits interactions within unlabeled data. Specifically, we construct a unified span-based heterogeneous graph from entity and relation candidates and propagate class labels based on confidence scores. We then employ a propagation learning scheme to leverage the affinities between labelled and unlabeled samples. Experiments on benchmark datasets show that our framework outperforms the state-of-the-art semi-supervised approaches on NER and RE tasks. We show that the joint semi-supervised learning of the two tasks benefits from their codependency and validates the importance of utilizing the shared information between unlabeled data. © 2023 Association for Computational Linguistics.

关键词： Extraction

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Random Number Generator for Securing Data Exchange in Smart Factory: Recent Trends and Best Practices 3

Random Number Generator for Securing Data Exchange in Smart ...

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3rd International Conference on computer Technologies, ICCTech 2024

作者： Sama, Andi Meyliana Heryadi, Yaya Sahroni, Taufik Roni Bina Nusantara University Binus Graduate Program - Computer Science Computer Science Department Jakarta11480 Indonesia Bina Nusantara University School of Information System Information System Department Jakarta11480 Indonesia BINUS Graduate Program-Doctor of Computer Science Jakarta Computer Science Department Jakarta11530 Indonesia Bina Nusantara University BINUS Graduate Program - Master of Industrial Engineering Industrial Engineering Department Jakarta11480 Indonesia

ISBN: (纸本)9798350395419

IT/OT convergence in the form of a Cyber-Physical System (CPS) presents an opportunity to apply recent Information Technology (IT) advancements to Operational Technology (OT). The IT/OT convergence introduces cyber security threats for OT. The OT communication protocols, for example, have limited or no security capabilities for securing data exchange beyond basic authentication. The RNG (Random Number Generator) function is crucial in PLC for producing the encryption keys or the initial seed for security algorithms. The software-based PRNG (Pseudo RNG) is the most common approach for RNG in OT, instead of hardware-based RNG. This study provides a systematic literature review of the most recent evidence in digital transformation to secure data exchange in smart factories, within OT, or across OT and IT settings. It does this by looking at the PRNG on PLC and identifying the most recent trends and best practices. The findings include up-to-date data on author countries' distribution, published journals, research trends, industries, and industry types. The findings also address whether data flow is encrypted or shared in plaintext to ensure secure data transfer between IT and legacy OT environments. This paper concludes that while there is known RNG implementation in the actual embedded system in ICS, there is no evidence in the literature for using RNG in ICS networks for PLC implementation to secure data transfer with encryption. © 2024 IEEE.

关键词： Data transfer

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Sentiment Analysis in Indonesian Trading using Lexicon-based and Support Vector Machine

Sentiment Analysis in Indonesian Trading using Lexicon-based...

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2023 International Conference on computer science, Information Technology and engineering, ICCoSITE 2023

作者： Oetama, Raymond Sunardi Yanfi, Yanfi Ikhsan Assiddiq Up, Masagus M. Muhamad Isa, Sani Universitas Multimedia Nusantara Information System DepartmentFaculty of Engineering and Informatics Jakarta Indonesia Bina Nusantara University BINUS Graduate Program Computer Science School of Computer Science Computer Science Department Jakarta Indonesia Bina Nusantara University BINUS Graduate Program Computer Science Computer Science Department Jakarta Indonesia

ISBN: (纸本)9798350320954

Many individuals now trade online utilizing trading software in the digital world. Binomo is one of Indonesia's most popular trading platforms. This is because some influencers made several promises to Binomo customers. Since many customers were deceived, this case became quite popular. This study was executed to see how Indonesians felt about the Binomo application after the case went viral. The solution taken was in the form of sentiment analysis because there had been no previous research on sentiment analysis that discussed the Binomo case. The data was scanned using Netlytic tools, a cloud-based text and social network analyzer capable of identifying any talks on social media sites such as Twitter. The sentiment analysis of Binomo trading tweets by using the Multi-Perspective Question Answering lexicon utilized the KNIME tool. But unfortunately, the accuracy of sentiment analysis results is low. Furthermore, the Support Vector Machine technique is also being conducted. The Term Frequency-Inverse Document Frequency method is applied to perform feature extraction whilst the chi-square approach is utilized to identify features that are thought to be useful for inclusion in the classification process and to exclude features that are irrelevant to the target class. The obtained accuracy is 86%. The study proposes that words from the algorithm's outputs can be utilized to improve the quality of sentiment analysis using the lexicon. As an outcome of the algorithm, positive and negative terms are added to the lexicon, increasing the accuracy of sentiment analysis using the new vocabulary from 58.984% to 71.146%. © 2023 IEEE.

关键词： Support vector machines

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The Effect of Viewpoint Change Strategies on Multi-View Video and Audio Transmission QoE Over ICN/CCN 38

The Effect of Viewpoint Change Strategies on Multi-View Vide...

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38th IEEE Region 10 Conference, TENCON 2023

作者： Nunome, Toshiro Takada, Yoshiyuki Computer Science Program Graduate School of Engineering Nagoya Institute of Technology Department of Engineering Nagoya466-8555 Japan

ISBN: (纸本)9798350302196

In this paper, we exploit caches on intermediate nodes for QoE enhancement of multi-view video and audio transmission over ICN/CCN by controlling the content request start timing of consumers. We assume the selected single viewpoint transmission method;a consumer receives video and audio streams of a requested viewpoint. We perform a simple experiment with two consumers. When the consumers play video and audio with the time difference, we assess the effect of cached content by the former consumer's request on the output quality of the latter consumer. We deal with two types of viewpoint change strategies for the former consumer, which affect the efficiency of cache utilization. From the assessment results, we see that cache utilization has an important factor in enhancing QoE. © 2023 IEEE.

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QoE Assessment of Audiovisual Streaming over a Full-Duplex Wireless LAN with Interference Traffic

QoE Assessment of Audiovisual Streaming over a Full-Duplex W...

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2023 International Conference on Consumer Electronics - Taiwan, ICCE-Taiwan 2023

作者： Nunome, Toshiro Deguchi, Daiki Graduate School of Engineering Nagoya Institute of Technology Computer Science Program Department of Engineering Nagoya466-8555 Japan

ISBN: (纸本)9798350324174

This paper evaluates the QoE of video and audio transmission over a full-duplex wireless LAN with interference traffic through a computer simulation and a subjective experiment. We employ a simulation environment with a pair of audiovisual transmission and reception terminals and a pair of interference traffic transmission and reception ones. We investigate the effect of the transmission rate of interference traffic and communication distance in a wireless channel on the output quality of the video and audio stream at the reception terminal. We perform a subjective experiment with the output timing of video and audio obtained by the simulation. © 2023 IEEE.

关键词： Wireless local area networks (WLAN)

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The Effect of Bitrate Control Methods of MPEG-DASH Streaming on Multi-View Video and Audio QoE

The Effect of Bitrate Control Methods of MPEG-DASH Streaming...

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2023 International Conference on Consumer Electronics - Taiwan, ICCE-Taiwan 2023

作者： Nunome, Toshiro Wakayama, Yamato Nagoya Institute of Technology Computer Science Program Department of Engineering Graduate School of Engineering Nagoya466-8555 Japan

ISBN: (纸本)9798350324174

This paper investigates the effect of bitrate control methods on QoE of multi-view video and audio streaming with MPEG-DASH. We adopt three bitrate control methods for conventional single-view video streaming to the MVV-A system with MPEG-DASH. We conduct a subjective experiment changing available network bandwidth and investigate the effect of the methods on QoE. © 2023 IEEE.

关键词： Video streaming

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