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arXiv 2021年

作者： Behzadinasab, Masoud Moutsanidis, Georgios Trask, Nathaniel Foster, John T. Bazilevs, Yuri School of Engineering Brown University 184 Hope St. ProvidenceRI02912 United States Department of Civil Engineering Stony Brook University Stony BrookNY11794 United States Institute for Advanced Computational Science Stony Brook University Stony BrookNY11794 United States Center for Computing Research Sandia National Laboratories AlbuquerqueNM87185 United States Hildebrand Department of Petroleum & Geosystems Engineering The University of Texas at Austin AustinTX78712 United States

We present a novel formulation based on an immersed coupling of Isogeometric Analysis (IGA) and Peridynamics (PD) for the simulation of fluid-structure interaction (FSI) phenomena for air blast. We aim to develop a practical computational framework that is capable of capturing the mechanics of air blast coupled to solids and structures that undergo large, inelastic deformations with extreme damage and fragmentation. An immersed technique is used, which involves an a priori monolithic FSI formulation with the implicit detection of the fluid-structure interface and without limitations on the solid domain motion. The coupled weak forms of the fluid and structural mechanics equations are solved on the background mesh. Correspondence-based PD is used to model the meshfree solid in the foreground domain. We employ the Non-Uniform Rational B-Splines (NURBS) IGA functions in the background and the Reproducing Kernel Particle Method (RKPM) functions for the PD solid in the foreground. We feel that the combination of these numerical tools is particularly attractive for the problem class of interest due to the higher-order accuracy and smoothness of IGA and RKPM, the benefits of using immersed methodology in handling the fluid-structure coupling, and the capabilities of PD in simulating fracture and fragmentation scenarios. Numerical examples are provided to illustrate the performance of the proposed air-blast FSI framework. © 2021, CC BY.

关键词： Continuum mechanics

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Ball $k$k-Means: Fast Adaptive Clustering With No Bounds

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IEEE Transactions on Pattern Analysis and Machine Intelligence 2020年第1期44卷 87-99页

作者： Shuyin Xia Daowan Peng Deyu Meng Changqing Zhang Guoyin Wang Elisabeth Giem Wei Wei Zizhong Chen Department of Chongqing Key Laboratory of Computational Intelligence Chongqing University of Posts and Telecommunications Chongqing China Macau Institute of Systems Engineering Macau University of Science and Technology Taipa Macau China School of Mathematics and Statistics Xi'an Jiaotong University Xi'an China College of Intelligence and Computing Tianjin University Tianjin China Department of Computer Science and Engineering University of California Riverside Riverside CA USA School of Computer Science and Engineering Xi'an University of Technology Xi'an China

This paper presents a novel accelerated exact $k$ -means called as “Ball $k$ -means” by using the ball to describe each cluster, which focus on reducing the point-centroid distance computation. The “Ball $k$ -means” can exactly find its neighbor clusters for each cluster, resulting distance computations only between a point and its neighbor clusters’ centroids instead of all centroids. What’s more, each cluster can be divided into “stable area” and “active area”, and the latter one is further divided into some exact “annular area”. The assignment of the points in the “stable area” is not changed while the points in each “annular area” will be adjusted within a few neighbor clusters. There are no upper or lower bounds in the whole process. Moreover, ball $k$ -means uses ball clusters and neighbor searching along with multiple novel stratagems for reducing centroid distance computations. In comparison with the current state-of-the art accelerated exact bounded methods, the Yinyang algorithm and the Exponion algorithm, as well as other top-of-the-line tree-based and bounded methods, the ball $k$ -means attains both higher performance and performs fewer distance calculations, especially for large-k problems. The faster speed, no extra parameters and simpler design of “Ball $k$ -means” make it an all-around replacement of the naive $k$ -means.

关键词： Clustering algorithms Approximation algorithms Acceleration Partitioning algorithms Standards Laboratories Time complexity

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Accelerated Sparse Recovery via Gradient Descent with Nonlinear Conjugate Gradient Momentum

arXiv

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arXiv 2022年

作者： Hu, Mengqi Lou, Yifei Wang, Bao Yan, Ming Yang, Xiu Ye, Qiang Department of Industrial and Systems Engineering Lehigh University 200 West Packer Avenue BethlehemPA18015 United States Department of Mathematical Sciences The University of Texas at Dallas 800 W. Campbell Rd RichardsonTX75080 United States Department of Mathematics and Scientific Computing Imaging Institute The University of Utah 72 Central Campus Dr Salt Lake CityUT84102 United States School of Data Science The Chinese University of Hong Kong Shenzhen 2001 Longxiang Blvd Guangdong Shenzhen China Department of Computational Mathematics Science and Engineering Department of Mathematics Michigan State University 428 South Shaw Lane East LansingMI48824 United States Department of Mathematics University of Kentucky LexingtonKY40513 United States

This paper applies an idea of adaptive momentum for the nonlinear conjugate gradient to accelerate optimization problems in sparse recovery. Specifically, we consider two types of minimization problems: a (single) differentiable function and the sum of a non-smooth function and a differentiable function. In the first case, we adopt a fixed step size to avoid the traditional line search and establish the convergence analysis of the proposed algorithm for a quadratic problem. This acceleration is further incorporated with an operator splitting technique to deal with the non-smooth function in the second case. We use the convex 1 and the nonconvex 1 − 2 functionals as two case studies to demonstrate the efficiency of the proposed approaches over traditional methods. © 2022, CC BY-SA.

关键词： Momentum

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Redefining pandemic preparedness:Multidisciplinary insights from the CERP modelling workshop in infectious diseases,workshop report

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Infectious Disease Modelling 2024年第2期9卷 501-518页

作者： Marta C.Nunes Edward Thommes Holger Fröhlich Antoine Flahault Julien Arino Marc Baguelin Matthew Biggerstaff Gaston Bizel-Bizellot Rebecca Borchering Giacomo Cacciapaglia Simon Cauchemez Alex Barbier-Chebbah Carsten Claussen Christine Choirat Monica Cojocaru Catherine Commaille-Chapus Chitin Hon Jude Kong Nicolas Lambert Katharina B.Lauer Thorsten Lehr Cédric Mahe Vincent Marechal Adel Mebarki Seyed Moghadas Rene Niehus Lulla Opatowski Francesco Parino Gery Pruvost Andreas Schuppert Rodolphe Thiébaut Andrea Thomas-Bachli Cecile Viboud Jianhong Wu Pascal Crépey Laurent Coudeville Center of Excellence in Respiratory Pathogens(CERP) Hospices Civils de Lyon(HCL)and Centre International de Recherche en Infectiologie(CIRI)Équipe SantéPubliqueÉpidémiologie etÉcologieÉvolutive des Maladies Infectieuses(PHE3ID)Inserm U1111CNRS UMR5308ENS de LyonUniversitéClaude Bernard Lyon 1LyonFrance South African Medical Research Council Vaccines&Infectious Diseases Analytics Research UnitFaculty of Health SciencesUniversity of the WitwatersrandJohannesburgSouth Africa New Products and Innovation(NPI) Sanofi Vaccines(Global)TorontoOntarioCanada Department of Mathematics and Statistics University of GuelphGuelphOntarioCanada Fraunhofer Institute for Algorithms and Scientific Computing(SCAI) Department of BioinformaticsSchloss BirlinghovenSankt AugustinGermany University of Bonn Bonn-Aachen International Center for IT(b-it)BonnGermany Institute of Global Health Faculty of MedicineUniversity of GenevaGenevaSwitzerland and Swiss School of Public HealthZürichSwitzerland Department of Mathematics University of ManitobaWinnipegManitobaCanada MRC Centre for Global Infectious Disease Analysis School of Public HealthImperial College LondonLondonUK Centre for Mathematical Modelling of Infectious Diseases Department of Infectious Disease EpidemiologyLondon School of Hygiene&Tropical MedicineLondonUK National Center for Immunization and Respiratory Diseases(NCIRD) US Centers for Disease Control and Prevention(CDC)AtlantaGAUSA Departement of Computational Biology Departement of Global HealthInstitut PasteurParisFrance Institut de Physique des Deux Infinis de Lyon(IP2I) UMR5822IN2P3/CNRSUniversitéClaude Bernard Lyon 1VilleurbanneFrance Mathematical Modelling of Infectious Diseases Unit Institut PasteurUniversitéParis CitéUMR2000 CNRSParisFrance Decision and Bayesian Computation Institut PasteurUniversitéParis CitéCNRS UMR 3571France Fraunhofer-Institute for Translational Medicine and Pharmacology HamburgGermany Institute of Global Health Faculty of MedicineUniversity of

In July 2023,the Center of Excellence in Respiratory Pathogens organized a two-day workshop on infectious diseases modelling and the lessons learnt from the Covid-19 *** report summarizes the rich discussions that occurred during the *** workshop participants discussed multisource data integration and highlighted the benefits of combining traditional surveillance with more novel data sources like mobility data,social media,and wastewater *** advancements were noted in the development of predictive models,with examples from various countries showcasing the use of machine learning and artificial intelligence in detecting and monitoring disease *** role of open collaboration between various stakeholders in modelling was stressed,advocating for the continuation of such partnerships beyond the pandemic.A major gap identified was the absence of a common international framework for data sharing,which is crucial for global pandemic ***,the workshop underscored the need for robust,adaptable modelling frameworks and the integration of different data sources and collaboration across sectors,as key elements in enhancing future pandemic response and preparedness.

关键词： Modelling Covid-19 Infectious diseases Pandemic preparedness Workshop

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Spectrum of mesons in quenched Sp(2N) gauge theories

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Physical Review D 2024年第9期109卷 094517-094517页

作者： Ed Bennett Jack Holligan Deog Ki Hong Jong-Wan Lee C.-J. David Lin Biagio Lucini Maurizio Piai Davide Vadacchino Swansea Academy of Advanced Computing Swansea University Fabian Way Swansea SA1 8EN Wales United Kingdom Biomedical and Physical Sciences Building Michigan State University East Lansing Michigan 48824 USA Department of Physics Pusan National University Busan 46241 Korea Institute for Extreme Physics Pusan National University Busan 46241 Korea Particle Theory and Cosmology Group Center for Theoretical Physics of the Universe Institute for Basic Science (IBS) Daejeon 34126 Korea Institute of Physics National Yang Ming Chiao Tung University 1001 Ta-Hsueh Road Hsinchu 30010 Taiwan Center for High Energy Physics Chung-Yuan Christian University Chung-Li 32023 Taiwan Centre for Theoretical and Computational Physics National Yang Ming Chiao Tung University 1001 Ta-Hsueh Road Hsinchu 30010 Taiwan Department of Mathematics Faculty of Science and Engineering Swansea University Fabian Way Swansea SA1 8EN Wales United Kingdom Department of Physics Faculty of Science and Engineering Swansea University Singleton Park Swansea SA2 8PP Wales United Kingdom Centre for Mathematical Sciences University of Plymouth Plymouth PL4 8AA United Kingdom

We report the findings of our extensive study of the spectra of flavored mesons in lattice gauge theories with symplectic gauge group and fermion matter content treated in the quenched approximation. For the Sp(4), Sp(6), and Sp(8) gauge groups, the (Dirac) fermions transform in either the fundamental, or the 2-index, antisymmetric or symmetric, representations. This study sets the stage for future precision calculations with dynamical fermions in the low-mass region of lattice parameter space. Our results have potential phenomenological applications ranging from composite Higgs models, to top (partial) compositeness, to dark matter models with composite, strong-coupling dynamical origin. Having adopted the Wilson flow as a scale-setting procedure, we apply Wilson chiral perturbation theory to extract the continuum and massless limits for the observables of interest. The resulting measurements are used to perform a simplified extrapolation to the large-N limit, hence drawing a preliminary connection with gauge theories with unitary groups. We conclude with a brief discussion of the Weinberg sum rules.

关键词： Composite models Extensions of fermion sector Naturalness Lattice field theory

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An AI-based approach to detect cognitive impairment from digital voice recordings of neuropsychological assessments

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Alzheimer's & Dementia 2022年第S7期18卷

作者： Samad Amini Boran Hao Lifu Zhang Mengting Song Aman Gupta Cody Karjadi Vijaya B. Kolachalama Rhoda Au Ioannis Paschalidis Division of Systems Engineering Boston University Boston MA USA Department of Electrical & Computer Engineering Boston University Boston MA USA The Framingham Heart Study Boston University School of Medicine Boston MA USA Hariri Institute for Computing and Computational Science & Engineering Boston University Boston MA USA Boston University School of Medicine Boston MA USA Faculty of Computing & Data Sciences Boston University Boston MA USA The Framingham Heart Study Boston University School of Medicine Boston University School of Public Health Boston MA USA Department of Biomedical Engineering Boston University Boston MA USA

Background Reliable cognitive impairment screening tools that are easy to administer and minimally time consuming are greatly needed. Given the high sensitivity of neuropsychological (NP) exams in detection of cognitive decline, we seek to develop an automated screening tool to detect dementia and mild cognitive impairment (MCI) based on digital voice recordings of NP assessments. This could enable wide-spread screening for dementia and accelerate preventative efforts. Method We used natural language processing methods to create a screening tool that identifies different stages of dementia based on automated transcription of digital voice recordings. The transcribed sentences were classified into 8 main sub-tests including memory assessment, naming and language skill, verbal fluency, general questions, etc. Using the idea of transfer learning, we encoded the participants' sentences into quantitative data. This data and the participants’ demographic variables such as age, sex, Apoe gene, and education were employed to train and test three binary classification tasks, (I) Normal cognition versus Dementia, (II) Normal/MCI versus Dementia, and (III) Normal versus MCI. Result We evaluated the performance of the classification tasks using the digital voice recordings of NP assessments, collected from the Framingham Heart Study, containing 410 cognitively intact subjects, 387 MCI, and 287 subjects with dementia. The average Area Under the Curve (AUC) on the held-out test data reached 92.6%, 88.0%, and 74.4% for differentiating Normal from Dementia, Normal or MCI from Dementia, and Normal from MCI, respectively. Looking at the importance of the sub-tests in differentiating MCI from Normal, we note that general questions can be more useful for assessment of MCI, whereas verbal fluency would not be as useful in this task. Conclusion The proposed approach offers a fully automated identification of MCI and dementia based on a recorded NP test, providing an opportunity to develo

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Leveraging randomized compiling for the quantum imaginary-time-evolution algorithm

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Physical Review Research 2022年第3期4卷 033140-033140页

作者： Jean-Loup Ville Alexis Morvan Akel Hashim Ravi K. Naik Marie Lu Bradley Mitchell John-Mark Kreikebaum Kevin P. O'Brien Joel J. Wallman Ian Hincks Joseph Emerson Ethan Smith Ed Younis Costin Iancu David I. Santiago Irfan Siddiqi Quantum Nanoelectronics Laboratory Dept. of Physics University of California at Berkeley Berkeley California 94720 USA Computational Research Division Lawrence Berkeley National Lab Berkeley California 94720 USA Materials Sciences Division Lawrence Berkeley National Lab Berkeley California 94720 USA Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology Cambridge Massachusetts 02139 USA Inst. for Quantum Computing and Dept. of Applied Mathematics University of Waterloo Waterloo Ontario Canada N2L 3G1 Quantum Benchmark Inc. Kitchener Ontario Canada N2H 5G5

Recent progress in noisy intermediate-scale quantum (NISQ) hardware shows that quantum devices may be able to tackle complex problems even without error correction. However, coherent errors due to the increased complexity of these devices is an outstanding issue. They can accumulate through a circuit, making their impact on algorithms hard to predict and mitigate. Iterative algorithms like quantum imaginary time evolution are susceptible to these errors. This article presents the combination of both noise tailoring using randomized compiling and error mitigation with purification. We also show that cycle benchmarking gives an estimate of the reliability of the purification. We apply this method to the quantum imaginary time evolution of a transverse field Ising model and report an energy estimation error and a ground-state infidelity both below 1%. Our methodology is general and can be used for other algorithms and platforms. We show how combining noise tailoring and error mitigation will push forward the performance of NISQ devices.

关键词： Measurement-based quantum computing Quantum algorithms Quantum benchmarking Quantum computation Quantum control Quantum information processing Quantum simulation

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Improving the accuracy and efficiency of quantum connected moments expansions

arXiv

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arXiv 2021年

作者： Claudino, Daniel Peng, Bo Bauman, Nicholas P. Kowalski, Karol Humble, Travis S. Oak Ridge National Laboratory Quantum Computing Institute Oak RidgeTN37831 United States Computer Science and Mathematics Oak Ridge National Laboratory Oak RidgeTN37831 United States Pacific Northwest National Laboratory Physical Sciences Division RichlandWA99352 United States Computational Sciences and Engineering Oak Ridge National Laboratory Oak RidgeTN37831 United States

The still-maturing noisy intermediate-scale quantum (NISQ) technology faces strict limitations on the algorithms that can be implemented efficiently. In quantum chemistry, the variational quantum eigensolver (VQE) algorithm has become ubiquitous, using the functional form of the ansatz as a degree of freedom, whose parameters are found variationally in a feedback loop between the quantum processor and its conventional counterpart. Alternatively, a promising new avenue has been unraveled by the quantum variants of techniques grounded on expansions of the moments of the Hamiltonian, among which two stand out: The connected moments expansion (CMX) [Phys. Rev. Lett. 58, 53 (1987)] and the Peeters-Devreese-Soldatov (PDS) functional [J. Phys. A 17, 625 (1984);Int. J. Mod. Phys. B 9, 2899], the latter based on the standard moments . Contrasting with VQE-based methods and provided the quantum circuit prepares a state with non-vanishing overlap with the true ground state, CMX often converges to the ground state energy, while PDS is guaranteed to converge by virtue of being variational. However, for a finite CMX/PDS order, the circuit may significantly impact the energy accuracy. Here we use the ADAPT-VQE algorithm to test shallow circuit construction strategies that are not expected to impede their implementation in the present quantum hardware while granting sizable accuracy improvement in the computed ground state energies. We also show that we can take advantage of the fact that the terms in the connected moments are highly recurring in different powers, incurring a sizable reduction in the number of necessary measurements. By coupling this measurement caching with a threshold that determines whether a given term is to be measured based on its associated scalar coefficient, we observe a further reduction in the number of circuit implementations while allowing for tunable accuracy. Copyright © 2021, The Authors. All rights reserved.

关键词： Quantum chemistry

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PitVis-2023 Challenge: Workflow Recognition in videos of Endoscopic Pituitary Surgery

arXiv

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arXiv 2024年

作者： Das, Adrito Khan, Danyal Z. Psychogyios, Dimitrios Zhang, Yitong Hanrahan, John G. Vasconcelos, Francisco Pang, You Chen, Zhen Wu, Jinlin Zou, Xiaoyang Zheng, Guoyan Qayyum, Abdul Mazher, Moona Razzak, Imran Li, Tianbin Ye, Jin He, Junjun Plotka, Szymon Kaleta, Joanna Yamlahi, Amine Jund, Antoine Godau, Patrick Kondo, Satoshi Kasai, Satoshi Hirasawa, Kousuke Rivoir, Dominik Pérez, Alejandra Rodriguez, Santiago Arbeláez, Pablo Stoyanov, Danail Marcus, Hani J. Bano, Sophia Wellcome EPSRC Centre for Interventional and Surgical Sciences University College London London United Kingdom Department of Neurosurgery National Hospital for Neurology and Neurosurgery London United Kingdom HKISI CAS China Institute of Medical Robotics School of Biomedical Engineering Shanghai Jiao Tong University Shanghai China National Heart and Lung Institute Faculty of Medicine Imperial College London United Kingdom Centre for Medical Image Computing University College London London United Kingdom University of New South Wales Sydney Australia Shanghai AI Lab Shanghai China Informatics Institute University of Amsterdam Amsterdam Netherlands Department of Biomedical Engineering and Physics Amsterdam University Medical Center University of Amsterdam Amsterdam Netherlands Sano Center for Computational Medicine Krakow Poland Heidelberg Division of Intelligent Medical Systems Germany NCT Heidelberg a partnership between DKFZ University Hospital Heidelberg Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Muroran Institute of Technology Hokkaido Japan Niigata University of Health and Welfare Niigata Japan Konica Minolta Inc. Osaka Japan National Center for Tumor Diseases Dresden Germany Centre for Tactile Internet TUD Dresden Germany Universidad de los Andes Bogota Colombia DKFZ UKDD TUD Germany

The field of computer vision applied to videos of minimally invasive surgery is ever-growing. Workflow recognition pertains to the automated recognition of various aspects of a surgery: including which surgical steps are performed;and which surgical instruments are used. This information can later be used to assist clinicians when learning the surgery;during live surgery;and when writing operation notes. The Pituitary Vision (PitVis) 2023 Challenge tasks the community to step and instrument recognition in videos of endoscopic pituitary surgery. This is a unique task when compared to other minimally invasive surgeries due to the smaller working space, which limits and distorts vision;and higher frequency of instrument and step switching, which requires more precise model predictions. Participants were provided with 25-videos, with results presented at the MICCAI-2023 conference as part of the Endoscopic Vision 2023 Challenge in Vancouver, Canada, on 08-Oct-2023. There were 18-submissions from 9-teams across 6-countries, using a variety of deep learning models. A commonality between the top performing models was incorporating spatio-temporal and multi-task methods, with greater than 50% and 10% macro-F1-score improvement over purely spacial single-task models in step and instrument recognition respectively. The PitVis-2023 Challenge therefore demonstrates state-of-the-art computer vision models in minimally invasive surgery are transferable to a new dataset, with surgery specific techniques used to enhance performance, progressing the field further. Benchmark results are provided in the paper, and the dataset is publicly available at: https://***/10.5522/04/26531686. Copyright © 2024, The Authors. All rights reserved.

关键词： Endoscopy

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Recent development on some numerical methods for stochastic partial differential equations

Recent development on some numerical methods for stochastic ...

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第十六届全国微分方程数值方法暨第十三届全国仿真算法学术会议

作者：洪佳林 LSEC Institute of Computational Mathematics and Scientific/Engineering ComputingAcademy of Mathematics and Systems ScienceChinese Academy of Sciences

In this talk we review our recent results on some important numerical issues for stochastic partial differential equations,inclusive of numerical stability,exponential integrability,invariant measure,numerical ergodic...

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