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arXiv 2024年

作者： Yuan, Han Hong, Chuan Jiang, Pengtao Zhao, Gangming Tran, Nguyen Tuan Anh Xu, Xinxing Yan, Yet Yen Liu, Nan Centre for Quantitative Medicine Duke-NUS Medical School Singapore Department of Biostatistics and Bioinformatics Duke University United States College of Computer Science Nankai University China Faculty of Engineering The University of Hong Kong Hong Kong Department of Diagnostic Radiology Singapore General Hospital Singapore Institute of High Performance Computing Agency for Science Technology and Research Singapore Department of Radiology Changi General Hospital Singapore Programme in Health Services and Systems Research Duke-NUS Medical School Singapore Institute of Data Science National University of Singapore Singapore

Background: Pneumothorax is an acute thoracic disease caused by abnormal air collection between the lungs and chest wall. Recently, artificial intelligence (AI), especially deep learning (DL), has been increasingly employed for automating the diagnostic process of pneumothorax. To address the opaqueness often associated with DL models, explainable artificial intelligence (XAI) methods have been introduced to outline regions related to pneumothorax diagnoses made by DL models. However, these explanations sometimes diverge from actual lesion areas, highlighting the need for further improvement. Method: We propose a template-guided approach to incorporate the clinical knowledge of pneumothorax into model explanations generated by XAI methods, thereby enhancing the quality of these explanations. Utilizing one lesion delineation created by radiologists, our approach first generates a template that represents potential areas of pneumothorax occurrence. This template is then superimposed on model explanations to filter out extraneous explanations that fall outside the template’s boundaries. To validate its efficacy, we carried out a comparative analysis of three XAI methods (Saliency Map, Grad-CAM, and Integrated Gradients) with and without our template guidance when explaining two DL models (VGG-19 and ResNet-50) in two real-world datasets (SIIM-ACR and ChestX-Det). Results: The proposed approach consistently improved baseline XAI methods across twelve benchmark scenarios built on three XAI methods, two DL models, and two datasets. The average incremental percentages, calculated by the performance improvements over the baseline performance, were 97.8% in Intersection over Union (IoU) and 94.1% in Dice Similarity Coefficient (DSC) when comparing model explanations and ground-truth lesion areas. We further visualized baseline and template-guided model explanations on radiographs to showcase the performance of our approach. Conclusions: In the context of pneumothorax diagnos

关键词： Diagnosis

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MAPA: Multi-Accelerator Pattern Allocation Policy for Multi-Tenant GPU Servers

MAPA: Multi-Accelerator Pattern Allocation Policy for Multi-...

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Supercomputing Conference

作者： Kiran Ranganath Joshua D. Suetterlein Joseph B. Manzano Shuaiwen Leon Song Daniel Wong Department of Electrical and Computer Engineering University of California Riverside CA USA High-Performance Computing Group Pacific Northwest National Lab WA USA Future System Architecture Lab School of Computer Science University of Sydney Sydney Australia

ISBN: (数字)9781450384421

ISBN: (纸本)9781665483902

Multi-accelerator servers are increasingly being deployed in shared multi-tenant environments (such as in cloud data centers) in order to meet the demands of large-scale compute-intensive workloads. In addition, these accelerators are increasingly being inter-connected in complex topologies and workloads are exhibiting a wider variety of inter-accelerator communication patterns. However, existing allocation policies are ill-suited for these emerging use-cases. Specifically, this work identifies that multi-accelerator workloads are commonly fragmented leading to reduced bandwidth and increased latency for inter-accelerator communication. We propose Multi-Accelerator Pattern Allocation (MAPA), a graph pattern mining approach towards providing generalized allocation support for allocating multi-accelerator workloads on multi-accelerator servers. We demonstrate that MAPA is able to improve the execution time of multi-accelerator workloads and that MAPA is able to provide generalized benefits across various accelerator topologies. Finally, we demonstrate a speedup of 12.4% for 75th percentile of jobs with the worst case execution time reduced by up to 35% against baseline policy using MAPA.

关键词： Network topology Processor scheduling high performance computing Graphics processing units Throughput Hardware Topology

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A Heuristic Sparsification Method to Improve the performance of Neural Networks on Autism Spectrum Disorder Identification Tasks

A Heuristic Sparsification Method to Improve the Performance...

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International Conference on Information science and Technology (ICIST)

作者： Fangyu Zhang Yi Pan Yanjie Wei Jin Liu Zhenli Lin Centre for High Performance Computing Chinese Academy of Sciences Shenzhen Institute of Advanced Technology Shenzhen China Shenzhen Key Laboratory of Intelligent Bioinformatics Chinese Academy of Sciences Shenzhen Institute of Advanced Technology Shenzhen China School of Computer Science and Engineering Central South University Changsha China Department of Ophthalmology Shenzhen University General Hospital Shenzhen China

Deep learning (DL) has been widely used in the detection of neurological diseases such as Autism spectrum disorder (ASD). Most studies in this field manually designed and adjusted the hyperparameters of DL models, but due to the huge search space, few studies have attempted to optimize the topology of neural networks which is another important factor related to the performance of DL models. This paper proposes a heuristic sparsification method named the Evolutionary Connection Sparsification Algorithm (ECSA) which is used to optimize the topology of fully connected neural networks (FC-NNs) and generate the corresponding sparsely connected neural networks (SC-NNs). The algorithm is based on the workflow of the genetic algorithm but with improved coding strategy, fitness evaluation approach, crossover and mutation operator, and including an effective convergence acceleration strategy. Experiments show that the SC-NNs generated by ECSA significantly outperform the original FC-NNs in terms of accuracy, F1-score, and AUC, and the model complexities are greatly reduced.

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Graph Confidence Intercalibration Network for Intracranial Aneurysm Lesion Instance Segmentation in Dsa

SSRN

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SSRN 2024年

作者： Ye, Haili Mo, Yancheng Tang, Chen Liao, Mingqian Zhang, Xiaoqing Dai, Limeng Li, Baihua Liu, Jiang Research Institute of Trustworthy Autonomous Systems Department of Computer Science and Engineering Southern University of Science and Technology Shenzhen518055 China Department of Computer Science Loughborough University LoughboroughLE11 3TU United Kingdom School of Ophthalmology and Optometry Eye Hospital Wenzhou Medical University Wenzhou325027 China Center for High Performance Computing and Shenzhen Key Laboratory of Intelligent Bioinformatics Shenzhen Institute of Advanced Technology Chinese Academy of Sciences Shenzhen518055 China Shenzhen People’s Hospital Neurosurgery Department Shenzhen518020 China China

Intracranial aneurysm (IA) lesion segmentation is significant for its treatment and prognosis. Although exiting deep network-based instance methods have good IA lesion segmentation results based on digital subtraction angiography (DSA) images, they still face great challenges with instance confidence bias and imprecise boundary segmentation, which may negatively affect IA diagnosis. To tackle these problems, this paper proposes a novel graph confidence intercalibration network (GCINet) to automatically segment IA lesions from DSA images. To be specific, we design a graph confidence intercalibration (GCI) module to mitigate instance confidence bias by dynamically adjusting their confidence distributions. At the same time, we propose an edge space perception (ESP) module to correct ambiguous segmentation boundaries. Extensive experiments on a clinical IA-DSA and a publicly available LiTS dataset demonstrate that our GCINet outperforms state-of-the-art methods. Additionally, visual analysis and ablation studies are provided to verify the effectiveness of each module in GCINet. © 2024, The Authors. All rights reserved.

关键词： Image segmentation

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Uncertainty Quantification of Signal Integrity Analysis for Neuromorphic Chips

IEEE Transactions on Signal and Power Integrity

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IEEE Transactions on Signal and Power Integrity 2022年 1卷 160-169页

作者： Hanzhi Ma Da Li Tuomin Tao Xingjian Shangguan En-Xiao Liu Jose Schutt-Aine Andreas C. Cangellaris Er-Ping Li College of Information Science and Electronic Engineering ZJU-UIUC Institute Zhejiang University Hangzhou China Key Lab of Advanced Micro/Nano Electronic Devices and Smart Systems of Zhejiang University Hangzhou China Zhejiang-Singapore Innovation and AI Joint Research Lab China Department of Electrical and Computer Engineering University of Illinois at Urbana-Champaign Urbana IL USA A*STAR Institute of High Performance Computing Singapore

A dimensionality reduction based neural network framework is introduced for uncertainty quantification of time-domain response based on system uncertain design parameters for neuromorphic chips. The proposed method firstly makes use of the singular value decomposition (SVD) method to find the basis functions and corresponding coefficients of time-domain response, of which coefficients are used as a lower dimensional target outputs in neural network model compared with time sampling points prediction. This newly proposed method then develops an integrated neural network structure to simultaneously find the mean and variance of target coefficients with a combined definition of loss function, which can be utilized together with basis functions to construct the prediction interval of time-domain response. A memrisor-based crossbar array is applied in this work to verify the performance of the proposed method with the comparison of Monte Carlo method.

关键词： Biological neural networks Uncertainty Memristors Time-domain analysis Integrated circuit modeling Neuromorphics Signal integrity Neural networks Neuromorphics

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Parallel attention network with sequence matching for video grounding

arXiv

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arXiv 2021年

作者： Zhang, Hao Sun, Aixin Jing, Wei Zhen, Liangli Zhou, Joey Tianyi Mong Goh, Rick Siow School of Computer Science and Engineering Nanyang Technological University Singapore Singapore Institute of High Performance Computing A*STAR Singapore Singapore Institute for Infocomm Research A*STAR Singapore Singapore

Given a video, video grounding aims to retrieve a temporal moment that semantically corresponds to a language query. In this work, we propose a Parallel Attention Network with Sequence matching (SeqPAN) to address the challenges in this task: multi-modal representation learning, and target moment boundary prediction. We design a self-guided parallel attention module to effectively capture self-modal contexts and cross-modal attentive information between video and text. Inspired by sequence labeling tasks in natural language processing, we split the ground truth moment into begin, inside, and end regions. We then propose a sequence matching strategy to guide start/end boundary predictions using region labels. Experimental results on three datasets show that SeqPAN is superior to state-of-the-art methods. Furthermore, the effectiveness of the self-guided parallel attention module and the sequence matching module is verified. Copyright © 2021, The Authors. All rights reserved.

关键词： Natural language processing systems

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Revisiting the onsets and frames model with additive attention

arXiv

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arXiv 2021年

作者： Cheuk, Kin Wai Luo, Yin-Jyun Benetos, Emmanouil Herremans, Dorien Information Systems Technology and Design Singapore University of Technology and Design Institute of High Performance Computing A*STAR School of Electronic Engineering and Computer Science Queen Mary University of London

Recent advances in automatic music transcription (AMT) have achieved highly accurate polyphonic piano transcription results by incorporating onset and offset detection. The existing literature, however, focuses mainly on the leverage of deep and complex models to achieve state-of-the-art (SOTA) accuracy, without understanding model behaviour. In this paper, we conduct a comprehensive examination of the Onsets-and-Frames AMT model, and pinpoint the essential components contributing to a strong AMT performance. This is achieved through exploitation of a modified additive attention mechanism. The experimental results suggest that the attention mechanism beyond a moderate temporal context does not benefit the model, and that rule-based post-processing is largely responsible for the SOTA performance. We also demonstrate that the onsets are the most significant attentive feature regardless of model complexity. The findings encourage AMT research to weigh more on both a robust onset detector and an effective post-processor. © 2021, CC BY.

关键词： Additives

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从四方到立方:高性能太阳能电池的钙钛矿相结构演变

引用

science Bulletin 2023年第2期68卷 141-145,M0003页

作者：魏旗梁昊 Yuki Haruta Makhsud Saidaminov 米启兮 Michael Saliba 崔光磊宁志军 School of Physical Science and Technology ShanghaiTech UniversityShanghai 201210China High Performance Computing Department National Supercomputing Center in ShenzhenShenzhen 200441China Department of Chemistry and Department of Electrical&Computer Engineering and Centre for Advanced Materials and Related Technologies(CAMTEC) University of VictoriaVictoria V8P 5C2Canada Institute for Photovoltaics University of StuttgartStuttgart 70569Germany Qingdao Industrial Energy Storage Research Institute Qingdao Institute of Bioenergy and Bioprocess TechnologyChinese Academy of SciencesQingdao 266101China

Crystal structure, which is generally determined by the composition, ionic radius and valence state of constituent elements, plays a significant role in the material’s fundamental properties such as optical, electronic, and mechanical characters. The manipulation of the crystal structure through compositional engineering, and understanding the relationship between crystal structure and properties are essential for the development of materials.

关键词：太阳能电池结构演变钙钛矿相

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Ideal Quadratic Nodal Point with Large Surface Arc States in Half-Heusler Material Scbipt

SSRN

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SSRN 2022年

作者： Yang, Tie Liu, Ying Tan, Xingwen Zhang, Xiaoming Wu, Zhimin Zhang, Gang State Key Lab for Reliability and Intelligence of Electrical Equipment China School of Physical Science and Technology Southwest University Chongqing400715 China School of Physics and Electronic Engineering Chongqing Normal University Chongqing401331 China School of Materials Science and Engineering Hebei University of Technology Tianjin300130 China Institute of High Performance Computing Agency for Science Technology and Research Connexis 138632 Singapore

Recently, the research focus of topological states in electronic systems has been shifted from the conventional linear type to high order dispersion, in which more exotic physical properties are exhibited, such as high topological charge, large magnetoresponse and unusual transport behavior. In this work, based on first principles calculations, we proposed a quadratic nodal point semimetal, the half-Heusler material ScBiPt. Detailed band structures reveal that an ideal nodal point is present exactly at the Fermi level and, more importantly, it exhibits quadratic dispersion along all directions, which has also been confirmed from the symmetry analyzation and effective model analysis. Moreover, when the spin orbital coupling effect is considered, the nodal point changes from triple to quadruple degeneracy but the quadratic dispersion is still maintained. Two prominent arc surface states are emanated from the nodal point and they are well separated from the bulk band, making the future experimental verification extremely beneficial. Overall, the current quadratic nodal point material with multiple advantages can serve as an ideal platform and the relative studies can be immediately inspired and advanced. © 2022, The Authors. All rights reserved.

关键词： Topology

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A Novel Human-Based Meta-Heuristic Algorithm: Dragon Boat Optimization

arXiv

引用

arXiv 2023年

作者： Li, Xiang Lan, Long Lahza, Husam Yang, Shaowu Wang, Shuihua Yang, Wenjing Liu, Hengzhu Zhang, Yudong College of Computer Science and Technology National University of Defense Technology Changsha410073 China Institute for Quantum Information State Key Laboratory of High Performance Computing College of Computer Science and Technology National University of Defense Technology Changsha410073 China Department of Information Technology Faculty of Computing and Information Technology King Abdulaziz University Jeddah21589 Saudi Arabia Department of Biological Sciences Xi’an Jiaotong-Liverpool University Jiangsu Suzhou215123 China School of Computing and Mathematical Sciences University of Leicester LeicesterLE1 7RH United Kingdom School of Computer Science and Engineering Southeast University Jiangsu Nanjing210096 China Department of Mathematical Sciences University of Liverpool LiverpoolL69 3BX United Kingdom

(Aim) Dragon Boat Racing, a popular aquatic folklore team sport, is traditionally held during the Dragon Boat Festival. Inspired by this event, we propose a novel human-based meta-heuristic algorithm called dragon boat optimization (DBO) in this paper. (Method) It models the unique behaviors of each crew member on the dragon boat during the race by introducing social psychology mechanisms (social loafing, social incentive). Throughout this process, the focus is on the interaction and collaboration among the crew members, as well as their decision-making in different situations. During each iteration, DBO implements different state updating strategies. By modelling the crew's behavior and adjusting the state updating strategies, DBO is able to maintain high-performance efficiency. (Results) We have tested the DBO algorithm with 29 mathematical optimization problems and 2 structural design problems. (Conclusion) The experimental results demonstrate that DBO is competitive with state-of-the-art meta-heuristic algorithms as well as conventional methods. © 2023, CC BY.

关键词： Structural optimization

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