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Analysis of multithreading in Java for symbolic computation on multicore processors

2014 National Conference on Emerging Trends in computing and Communication, ETCC 2014

作者： Murarka, Pawan Raj Reza, Motahar Panda, Rama Ranjan High Performance Computing Lab. School of Computer Science and Engineering National Institute of Science and Technology Berhampur Odisha India

ISBN: (纸本)9788132218166

In this paper we have described the impact on efficiency of algebraic computation due to multi core systems using java as the programming language. Hence we had taken two machines with different specification having variants of Windows in them and made a comparative analysis taking five different input samples. During this process we came across several aspects on which the computation performance depends upon. In succeeding discussion we have given a vivid description of how these factors show variations when they are blended in different quantities thereby justifying the need of a robust algorithm and a high performance system for efficient computation of mathematical expressions with varying complexities. © 2014 Springer.

关键词： Computational efficiency

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Erratum to: Search for heavy resonances decaying into a W or Z boson and a Higgs boson in final states with leptons and b-jets in 36 fb−1 of TeV pp collisions with the ATLAS detector

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Journal of high Energy Physics 2018年第11期2018卷 1-18页

作者： Aaboud, M. Aad, G. Abbott, B. Abdinov, O. Abeloos, B. Abidi, S. H. AbouZeid, O. S. Abraham, N. L. Abramowicz, H. Abreu, H. Abreu, R. Abulaiti, Y. Acharya, B. S. Adachi, S. Adamczyk, L. Adelman, J. Adersberger, M. Adye, T. Affolder, A. A. Afik, Y. Agatonovic-Jovin, T. Agheorghiesei, C. Aguilar-Saavedra, J. A. Ahlen, S. P. Ahmadov, F. Aielli, G. Akatsuka, S. Akerstedt, H. Åkesson, T. P. A. Akilli, E. Akimov, A. V. Alberghi, G. L. Albert, J. Albicocco, P. Alconada Verzini, M. J. Alderweireldt, S. C. Aleksa, M. Aleksandrov, I. N. Alexa, C. Alexander, G. Alexopoulos, T. Alhroob, M. Ali, B. Aliev, M. Alimonti, G. Alison, J. Alkire, S. P. Allbrooke, B. M. M. Allen, B. W. Allport, P. P. Aloisio, A. Alonso, A. Alonso, F. Alpigiani, C. Alshehri, A. A. Alstaty, M. I. Alvarez Gonzalez, B. Álvarez Piqueras, D. Alviggi, M. G. Amadio, B. T. Amaral Coutinho, Y. Amelung, C. Amidei, D. Amor Dos Santos, S. P. Amoroso, S. Amundsen, G. Anastopoulos, C. Ancu, L. S. Andari, N. Andeen, T. Anders, C. F. Anders, J. K. Anderson, K. J. Andreazza, A. Andrei, V. Angelidakis, S. Angelozzi, I. Angerami, A. Anisenkov, A. V. Anjos, N. Annovi, A. Antel, C. Antonelli, M. Antonov, A. Antrim, D. J. Anulli, F. Aoki, M. Aperio Bella, L. Arabidze, G. Arai, Y. Araque, J. P. Araujo Ferraz, V. Arce, A. T. H. Ardell, R. E. Arduh, F. A. Arguin, J-F. Argyropoulos, S. Arik, M. Armbruster, A. J. Armitage, L. J. Arnaez, O. Arnold, H. Arratia, M. Arslan, O. Artamonov, A. Artoni, G. Artz, S. Asai, S. Asbah, N. Ashkenazi, A. Asquith, L. Assamagan, K. Astalos, R. Atkinson, M. Atlay, N. B. Augsten, K. Avolio, G. Axen, B. Ayoub, M. K. Azuelos, G. Baas, A. E. Baca, M. J. Bachacou, H. Bachas, K. Backes, M. Bagnaia, P. Bahmani, M. Bahrasemani, H. Baines, J. T. Bajic, M. Baker, O. K. Bakker, P. J. Baldin, E. M. Balek, P. Balli, F. Balunas, W. K. Banas, E. Bandyopadhyay, A. Banerjee, Sw. Bannoura, A. A. E. Barak, L. Barberio, E. L. Barberis, D. Barbero, M. Barillari, T. Barisits, M-S Barkeloo, J. T. Barklow, T. Barlow, N. Barnes, S. L. Barnett, B. M. Barnett, R. M. Barnovs Faculté des Sciences Université Mohamed Premier and LPTPM Oujda Morocco CPPM Aix-Marseille Université and CNRS/IN2P3 Marseille France Homer L. Dodge Department of Physics and Astronomy University of Oklahoma Norman United States of America Institute of Physics Azerbaijan Academy of Sciences Baku Azerbaijan LAL Univ. Paris-Sud CNRS/IN2P3 Université Paris-Saclay Orsay France Department of Physics University of Toronto Toronto Canada Santa Cruz Institute for Particle Physics University of California Santa Cruz Santa Cruz United States of America Department of Physics and Astronomy University of Sussex Brighton United Kingdom Raymond and Beverly Sackler School of Physics and Astronomy Tel Aviv University Tel Aviv Israel Department of Physics Technion: Israel Institute of Technology Haifa Israel Center for High Energy Physics University of Oregon Eugene United States of America Department of Physics Stockholm University Stockholm Sweden The Oskar Klein Centre Stockholm Sweden INFN Gruppo Collegato di Udine Sezione di Trieste Udine Italy ICTP Trieste Italy Department of Physics King’s College London London United Kingdom International Center for Elementary Particle Physics and Department of Physics The University of Tokyo Tokyo Japan AGH University of Science and Technology Faculty of Physics and Applied Computer Science Krakow Poland Department of Physics Northern Illinois University DeKalb United States of America Fakultät für Physik Ludwig-Maximilians-Universität München München Germany Particle Physics Department Rutherford Appleton Laboratory Didcot United Kingdom Institute of Physics University of Belgrade Belgrade Serbia Department of Physics Alexandru Ioan Cuza University of Iasi Iasi Romania Laboratório de Instrumentação e Física Experimental de Partículas – LIP Lisboa Portugal Departamento de Fisica Teorica y del Cosmos Universidad de Granada Granada Portugal Department of Physics Boston University Boston United States of America Joi

One correction is noted for the paper. The exclusion limits for the gluon-gluon fusion production of an A boson reported in the conclusions did not correspond to the exclusion plots shown in figure 6a.

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Search for ingle production of vector-like quark decaying into Wb in pp colliion at = 13 TeV with the ATLAS detector

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Journal of high Energy Physics 2019年第5期2019卷 164-164页

作者： The ATLAS collaboration M. Aaboud G. Aad B. Abbott O. Abdinov B. Abeloos D. K. Abhayasinghe S. H. Abidi O. S. AbouZeid N. L. Abraham H. Abramowicz H. Abreu Y. Abulaiti B. S. Acharya S. Adachi L. Adam L. Adamczyk J. Adelman M. Adersberger A. Adiguzel T. Adye A. A. Affolder Y. Afik C. Agheorghiesei J. A. Aguilar-Saavedra F. Ahmadov G. Aielli S. Akatsuka T. P. A. Åkesson E. Akilli A. V. Akimov G. L. Alberghi J. Albert P. Albicocco M. J. Alconada Verzini S. Alderweireldt M. Aleksa I. N. Aleksandrov C. Alexa T. Alexopoulos M. Alhroob B. Ali G. Alimonti J. Alison S. P. Alkire C. Allaire B. M. M. Allbrooke B. W. Allen P. P. Allport A. Aloisio A. Alonso F. Alonso C. Alpigiani A. A. Alshehri M. I. Alstaty B. Alvarez Gonzalez D. Álvarez Piqueras M. G. Alviggi B. T. Amadio Y. Amaral Coutinho A. Ambler L. Ambroz C. Amelung D. Amidei S. P. Amor Dos Santos S. Amoroso C. S. Amrouche C. Anastopoulos L. S. Ancu N. Andari T. Andeen C. F. Anders J. K. Anders K. J. Anderson A. Andreazza V. Andrei C. R. Anelli S. Angelidakis I. Angelozzi A. Angerami A. V. Anisenkov A. Annovi C. Antel M. T. Anthony M. Antonelli D. J. A. Antrim F. Anulli M. Aoki J. A. Aparisi Pozo L. Aperio Bella G. Arabidze J. P. Araque V. Araujo Ferraz R. Araujo Pereira A. T. H. Arce R. E. Ardell F. A. Arduh J-F. Arguin S. Argyropoulos A. J. Armbruster L. J. Armitage A Armstrong O. Arnaez H. Arnold M. Arratia O. Arslan A. Artamonov G. Artoni S. Artz S. Asai N. Asbah E. M. Asimakopoulou L. Asquith K. Assamagan R. Astalos R. J. Atkin M. Atkinson N. B. Atlay K. Augsten G. Avolio R. Avramidou M. K. Ayoub G. Azuelos A. E. Baas M. J. Baca H. Bachacou K. Bachas M. Backes P. Bagnaia M. Bahmani H. Bahrasemani A. J. Bailey J. T. Baines M. Bajic C. Bakalis O. K. Baker P. J. Bakker D. Bakshi Gupta S. Balaji E. M. Baldin P. Balek F. Balli W. K. Balunas J. Balz E. Banas A. Bandyopadhyay S. Banerjee A. A. E. Bannoura L. Barak W. M. Barbe E. L. Barberio D. Barberis M. Barbero T. Barillari M-S. Barisits J. Barkeloo T. Barklow R. Barnea S. L. Barnes B. M. Barnett R. M. Barnett Z. Barn University Politehnica Bucharest Centre National de l’Energie des Sciences Techniques Nucleaires (CNESTEN) Universidade Nova de Lisboa CERN Université Mohamed Premier and LPTPM CPPM Aix-Marseille Université CNRS/IN2P3 University of Oklahoma Azerbaijan Academy of Sciences Université Paris-Saclay Royal Holloway University of London University of Toronto University of Copenhagen University of Sussex Tel Aviv University Technion Israel Institute of Technology High Energy Physics Division Argonne National Laboratory Sezione di Trieste ICTP King’s College London University of Tokyo Universität Mainz AGH University of Science and Technology Faculty of Physics and Applied Computer Science Northern Illinois University Ludwig-Maximilians-Universität München Bogazici University Istanbul University Dept. of Physics Rutherford Appleton Laboratory University of California Santa Cruz Alexandru Ioan Cuza University of Iasi Universidad de Granada Laboratório de Instrumentação e Física Experimental de Partículas — LIP Joint Institute for Nuclear Research INFN Sezione di Roma Tor Vergata Università di Roma Tor Vergata Kyoto University Lunds universitet Université de Genève P.N. Lebedev Physical Institute of the Russian Academy of Sciences INFN Sezione di Bologna Università di Bologna University of Victoria INFN e Laboratori Nazionali di Frascati Universidad Nacional de La Plata and CONICET Radboud University Nijmegen/Nikhef Horia Hulubei National Institute of Physics and Nuclear Engineering National Technical University of Athens Czech Technical University in Prague INFN Sezione di Milano University of Chicago University of Washington University of Oregon University of Birmingham INFN Sezione di Napoli Università di Napoli University of Glasgow Centro Mixto Universidad de Valencia — CSIC Lawrence Berkeley National Laboratory and University of California Universidade Federal do Rio De Janeiro COPPE/EE/IF McGill University Oxford University Brandeis University University of Michigan Universidade de Coimbra Deutsches Elektronen-

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Search for heavy resonances decaying to a Z boson and a photon in pp collisions at s=13 TeV with the ATLAS detector

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Physics Letters, Section B: Nuclear, Elementary Particle and high-Energy Physics 2017年 764卷 11-30页

作者： Aaboud, M. Aad, G. Abbott, B. Abdallah, J. Abdinov, O. Abeloos, B. Aben, R. AbouZeid, O.S. Abraham, N.L. Abramowicz, H. Abreu, H. Abreu, R. Abulaiti, Y. Acharya, B.S. Adachi, S. Adamczyk, L. Adams, D.L. Adelman, J. Adomeit, S. Adye, T. Affolder, A.A. Agatonovic-Jovin, T. Agricola, J. Aguilar-Saavedra, J.A. Ahlen, S.P. Ahmadov, F. Aielli, G. Akerstedt, H. Åkesson, T.P.A. Akimov, A.V. Alberghi, G.L. Albert, J. Albrand, S. Alconada Verzini, M.J. Aleksa, M. Aleksandrov, I.N. Alexa, C. Alexander, G. Alexopoulos, T. Alhroob, M. Ali, B. Aliev, M. Alimonti, G. Alison, J. Alkire, S.P. Allbrooke, B.M.M. Allen, B.W. Allport, P.P. Aloisio, A. Alonso, A. Alonso, F. Alpigiani, C. Alshehri, A.A. Alstaty, M. Alvarez Gonzalez, B. Álvarez Piqueras, D. Alviggi, M.G. Amadio, B.T. Amako, K. Amaral Coutinho, Y. Amelung, C. Amidei, D. Amor Dos Santos, S.P. Amorim, A. Amoroso, S. Amundsen, G. Anastopoulos, C. Ancu, L.S. Andari, N. Andeen, T. Anders, C.F. Anders, G. Anders, J.K. Anderson, K.J. Andreazza, A. Andrei, V. Angelidakis, S. Angelozzi, I. Anger, P. Angerami, A. Anghinolfi, F. Anisenkov, A.V. Anjos, N. Annovi, A. Antel, C. Antonelli, M. Antonov, A. Anulli, F. Aoki, M. Aperio Bella, L. Arabidze, G. Arai, Y. Araque, J.P. Arce, A.T.H. Arduh, F.A. Arguin, J-F. Argyropoulos, S. Arik, M. Armbruster, A.J. Armitage, L.J. Arnaez, O. Arnold, H. Arratia, M. Arslan, O. Artamonov, A. Artoni, G. Artz, S. Asai, S. Asbah, N. Ashkenazi, A. Åsman, B. Asquith, L. Assamagan, K. Astalos, R. Atkinson, M. Atlay, N.B. Augsten, K. Avolio, G. Axen, B. Ayoub, M.K. Azuelos, G. Baak, M.A. Baas, A.E. Baca, M.J. Bachacou, H. Bachas, K. Backes, M. Backhaus, M. Bagiacchi, P. Bagnaia, P. Bai, Y. Baines, J.T. Baker, O.K. Baldin, E.M. Balek, P. Balestri, T. Balli, F. Balunas, W.K. Banas, E. Banerjee, Sw. Bannoura, A.A.E. Barak, L. Barberio, E.L. Barberis, D. Barbero, M. Barillari, T. Barisits, M-S Barklow, T. Barlow, N. Barnes, S.L. Barnett, B.M. Barnett, R.M. Barnovska-Blenessy, Z. Baroncelli, A. Barone, G. Barr, A.J. Barranco Navarro, L. Barreiro, F. Barreiro Gui Department of Physics University of Adelaide Adelaide Australia Physics Department SUNY Albany Albany NY United States Department of Physics University of Alberta Edmonton AB Canada Department of Physics Ankara University Ankara Turkey Istanbul Aydin University Istanbul Turkey Division of Physics TOBB University of Economics and Technology Ankara Turkey LAPP CNRS/IN2P3 Université Savoie Mont Blanc Annecy-le-Vieux France High Energy Physics Division Argonne National Laboratory Argonne IL United States Department of Physics University of Arizona Tucson AZ United States Department of Physics The University of Texas at Arlington Arlington TX United States Physics Department University of Athens Athens Greece Physics Department National Technical University of Athens Zografou Greece Department of Physics The University of Texas at Austin Austin TX United States Institute of Physics Azerbaijan Academy of Sciences Baku Azerbaijan Institut de Física d'Altes Energies (IFAE) The Barcelona Institute of Science and Technology Barcelona Spain Institute of Physics University of Belgrade Belgrade Serbia Department for Physics and Technology University of Bergen Bergen Norway Physics Division Lawrence Berkeley National Laboratory University of California Berkeley CA United States Department of Physics Humboldt University Berlin Germany Albert Einstein Center for Fundamental Physics Laboratory for High Energy Physics University of Bern Bern Switzerland School of Physics and Astronomy University of Birmingham Birmingham United Kingdom Department of Physics Bogazici University Istanbul Turkey Department of Physics Engineering Gaziantep University Gaziantep Turkey Istanbul Bilgi University Faculty of Engineering and Natural Sciences Istanbul Turkey Bahcesehir University Faculty of Engineering and Natural Sciences Istanbul Turkey Centro de Investigaciones Universidad Antonio Narino Bogota Colombia INFN Sezione di Bologna Italy Dipartimento di Fis

This Letter presents a search for new resonances with mass larger than 250 GeV, decaying to a Z boson and a photon. The dataset consists of an integrated luminosity of 3.2 fb−1 of pp collisions collected at s=13 TeV w... 详细信息

This Letter presents a search for new resonances with mass larger than 250 GeV, decaying to a Z boson and a photon. The dataset consists of an integrated luminosity of 3.2 fb⁻¹ of pp collisions collected at s=13 TeV with the ATLAS detector at the Large Hadron Collider. The Z bosons are identified through their decays either to charged, light, lepton pairs (e⁺e⁻, μ⁺μ⁻) or to hadrons. The data are found to be consistent with the expected background in the whole mass range investigated and upper limits are set on the production cross section times decay branching ratio to Zγ of a narrow scalar boson with mass between 250 GeV and 2.75 TeV. © 2016 The Author(s)

关键词： Z bosons CROSS sections (Nuclear physics) PHOTON-photon interactions LARGE Hadron Collider (France & Switzerland) DILEPTON production NUCLEAR counters

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Contraint on mediator-baed dark matter and calar dark energy model uing = 13 TeV pp colliion data collected by the ATLAS detector

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Journal of high Energy Physics 2019年第5期2019卷 142-142页

作者： The ATLAS collaboration M. Aaboud G. Aad B. Abbott D. C. Abbott O. Abdinov D. K. Abhayasinghe S. H. Abidi O. S. AbouZeid N. L. Abraham H. Abramowicz H. Abreu Y. Abulaiti B. S. Acharya S. Adachi L. Adam C. Adam Bourdarios L. Adamczyk L. Adamek J. Adelman M. Adersberger A. Adiguzel T. Adye A. A. Affolder Y. Afik C. Agapopoulou M. N. Agaras A. Aggarwal C. Agheorghiesei J. A. Aguilar-Saavedra F. Ahmadov G. Aielli S. Akatsuka T. P. A. Åkesson E. Akilli A. V. Akimov K. Al Khoury G. L. Alberghi J. Albert M. J. Alconada Verzini S. Alderweireldt M. Aleksa I. N. Aleksandrov C. Alexa D. Alexandre T. Alexopoulos M. Alhroob B. Ali G. Alimonti J. Alison S. P. Alkire C. Allaire B. M. M. Allbrooke B. W. Allen P. P. Allport A. Aloisio A. Alonso F. Alonso C. Alpigiani A. A. Alshehri M. I. Alstaty M. Alvarez Estevez B. Alvarez Gonzalez D. Álvarez Piqueras M. G. Alviggi Y. Amaral Coutinho A. Ambler L. Ambroz C. Amelung D. Amidei S. P. Amor Dos Santos S. Amoroso C. S. Amrouche F. An C. Anastopoulos N. Andari T. Andeen C. F. Anders J. K. Anders A. Andreazza V. Andrei C. R. Anelli S. Angelidakis I. Angelozzi A. Angerami A. V. Anisenkov A. Annovi C. Antel M. T. Anthony M. Antonelli D. J. A. Antrim F. Anulli M. Aoki J. A. Aparisi Pozo L. Aperio Bella G. Arabidze J. P. Araque V. Araujo Ferraz R. Araujo Pereira A. T. H. Arce F. A. Arduh J-F. Arguin S. Argyropoulos J.-H. Arling A. J. Armbruster L. J. Armitage A. Armstrong O. Arnaez H. Arnold A. Artamonov G. Artoni S. Artz S. Asai N. Asbah E. M. Asimakopoulou L. Asquith K. Assamagan R. Astalos R. J. Atkin M. Atkinson N. B. Atlay K. Augsten G. Avolio R. Avramidou M. K. Ayoub A. M. Azoulay G. Azuelos A. E. Baas M. J. Baca H. Bachacou K. Bachas M. Backes F. Backman P. Bagnaia M. Bahmani H. Bahrasemani A. J. Bailey V. R. Bailey J. T. Baines M. Bajic C. Bakalis O. K. Baker P. J. Bakker D. Bakshi Gupta S. Balaji E. M. Baldin P. Balek F. Balli W. K. Balunas J. Balz E. Banas A. Bandyopadhyay Sw. Banerjee A. A. E. Bannoura L. Barak W. M. Barbe E. L. Barberio D. Barberis M. Barbero T. Barillari M-S. B University Politehnica Bucharest Université Ibn-Tofail Universidade Nova de Lisboa CERN Université Mohamed Premier and LPTPM CPPM Aix-Marseille Université CNRS/IN2P3 University of Oklahoma University of Massachusetts Azerbaijan Academy of Sciences Royal Holloway University of London University of Toronto University of Copenhagen University of Sussex Tel Aviv University Technion Israel Institute of Technology Argonne National Laboratory Sezione di Trieste ICTP King’s College London University of Tokyo Universität Mainz Université Paris-Saclay AGH University of Science and Technology Faculty of Physics and Applied Computer Science Northern Illinois University Ludwig-Maximilians-Universität München Bogazici University Istanbul University Dept. of Physics Particle Physics Department Rutherford Appleton Laboratory University of California Santa Cruz LPC Université Clermont Auvergne CNRS/IN2P3 Radboud University Nijmegen/Nikhef Alexandru Ioan Cuza University of Iasi Universidad de Granada Laboratório de Instrumentação e Física Experimental de Partículas – LIP IFT-UAM/CSIC Joint Institute for Nuclear Research INFN Sezione di Roma Tor Vergata Università di Roma Tor Vergata Kyoto University Lunds universitet Université de Genève P.N. Lebedev Physical Institute of the Russian Academy of Sciences INFN Sezione di Bologna INFN Bologna and Universita’ di Bologna Dipartimento di Fisica University of Victoria Universidad Nacional de La Plata and CONICET Horia Hulubei National Institute of Physics and Nuclear Engineering Humboldt Universität zu Berlin National Technical University of Athens Republic Czech Technical University in Prague INFN Sezione di Milano University of Chicago University of Washington University of Oregon University of Birmingham INFN Sezione di Napoli Università di Napoli University of Glasgow Universidad Autónoma de Madrid Centro Mixto Universidad de Valencia – CSIC Universidade Federal do Rio De Janeiro COPPE/EE/IF McGill University Oxford University Brandeis University University of Michigan Unive

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Characterizing the performance-energy tradeoff of small ARM Cores in HPC computation 1

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20th International Conference on Parallel Processing, Euro-Par 2014

作者： Laurenzano, Michael A. Tiwari, Ananta Jundt, Adam Peraza, Joshua Ward Jr., William A. Campbell, Roy Carrington, Laura EP Analytics United States Dept. of Computer Science and Engineering University of Michigan United States Performance Modeling and Characterization Lab San Diego Supercomputer Center United States High Performance Computing Modernization Program U.S. Dept. of Defense United States

ISBN: (数字)9783319098739

ISBN: (纸本)9783319098722

Deploying large numbers of small, low-power cores has been gaining traction recently as a system design strategy in high performance computing (HPC). The ARM platform that dominates the embedded and mobile computing segments is now being considered as an alternative to high-end x86 processors that largely dominate HPC because peak performance per watt may be substantially improved using off-the-shelf commodity processors. In this work we methodically characterize the performance and energy of HPC computations drawn from a number of problem domains on current ARM and x86 processors. Unsurprisingly, we find that the performance, energy and energy-delay product of applications running on these platforms varies significantly across problem types and inputs. Using static program analysis we further show that this variation can be explained largely in terms of the capabilities of two processor subsystems: single instruction multiple data (SIMD)/floating point and the cache/memory hierarchy;and that static analysis of this kind is sufficient to predict which platform is best for a particular application/input pair. In the context of these findings, we evaluate how some of the key architectural changes being made for upcoming 64-bit ARM platforms may impact HPC application performance. © 2014 Springer International Publishing Switzerland.

关键词： Static analysis

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Parallel Bayesian Network Structure Learning for Genome-Scale Gene Networks

Parallel Bayesian Network Structure Learning for Genome-Scal...

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Supercomputing Conference

作者： Sanchit Misra Md. Vasimuddin Kiran Pamnany Sriram P. Chockalingam Yong Dong Min Xie Maneesha R. Aluru Srinivas Aluru Parallel Computing Lab Intel Corporation Bangalore India Dept. of Computer Science and Engineering Indian Institute of Technology Bombay Mumbai India State Key Laboratory of High Performance Computing National University of Defense Technology Changsha China School of Biology Georgia Institute of Technology Atlanta USA School of Computational Science and Engineering Georgia Institute of Technology Atlanta USA

Learning Bayesian networks is NP-hard. Even with recent progress in heuristic and parallel algorithms, modeling capabilities still fall short of the scale of the problems encountered. In this paper, we present a massively parallel method for Bayesian network structure learning, and demonstrate its capability by constructing genome-scale gene networks of the model plant Arabidopsis thaliana from over 168.5 million gene expression values. We report strong scaling efficiency of 75% and demonstrate scaling to 1.57 million cores of the Tianhe-2 supercomputer. Our results constitute three and five orders of magnitude increase over previously published results in the scale of data analyzed and computations performed, respectively. We achieve this through algorithmic innovations, using efficient techniques to distribute work across all compute nodes, all available processors and coprocessors on each node, all available threads on each processor and coprocessor, and vectorization techniques to maximize single thread performance.

关键词： Bayes methods Hypercubes Instruction sets Genomics Bioinformatics Coprocessors Vectors

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performance Pattern of Unified Parallel C on Multi-Core Clusters

Performance Pattern of Unified Parallel C on Multi-Core Clus...

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International Workshop on Intelligent Communication and Social Networks

作者： Nor Asilah Wati Abdul Hamid Olivier Serres Ahmad Anbar Sazlinah Hassan High Performance Computing Lab (HPCL) Department of Electrical and Computer Engineering The George Washington University Faculty of Computer Science & Information Technology Universiti Putra Malaysia

ISBN: (纸本)9781479909735

The Partitioned Global Address Space (PGAS) model has been widely used in multi-core clusters as an alternative to MPI. Among the widespread use is Unified Parallel C (UPC). Previous research has shown that UPC performance is comparable with MPI, however in certain cases UPC require hand-tuning techniques such as pre-fetching and privatized pointers-to-shared to improve the performance. In this paper we reviews, evaluate and analyze the performance pattern between UPC Naive, UPC optimize and MPI on two different multi-core clusters architecture. We focus our study using matrix multiplication as the benchmark and perform our experimental on two distributed memory machine;Cray XE6 with Gemini interconnects and Sun Cluster with Infiniband interconnects. We provide analysis on each core execution time to understand the pattern of communication for both machines. We also demonstrate the gaps between naive and optimized are depends on the compiler with its associate distributed memory machine. We also observed unnecessary optimization for certain programs related to HPC architecture and compiler.

关键词： performance Evaluation PGAS UPC MPI Gemini

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An implementation of a multi-site virtual cluster cloud

An implementation of a multi-site virtual cluster cloud

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International Joint Conference on computer science and Software engineering (JCSSE)

作者： Pongsakorn U-chupala Putchong Uthayopas Kohei Ichikawa Susumu Date Hirotake Abe High Performance Computing and Networking Center Department of Computer Engineering Faculty of Engineering Kasetsart University Bangkok Thailand Software Design & Analysis Laboratory Graduate School of Information Science NAIST Nara Japan Cybermedia Center Osaka University Osaka Japan Division of Information Science Graduate School of Systems and Information Engineering University of Tsukuba Ibaragi Japan

ISBN: (纸本)9781479908059

The use of virtual cluster for high performance computing (HPC) work has a great benefit of hiding the complexity of physical infrastructure while providing a familiar HPC environment for users. Nevertheless, setting up one is still a challenging task for most users. In addition, the ability to span a virtual cluster across a multi-site cloud can even create a great potential for users to harness a much higher processing power from the cloud. In this paper, the development of a multi-site virtual cluster cloud is presented. This is done by providing the cloud infrastructures tailored specifically for virtual cluster deployment along with related utilities such as web-interface monitor and command line tools. To realize this infrastructure, an overlay network is created using Virtual Private Network (VPN) technology to merge every site into a single broadcast domain. Moreover, a Multi-tier VPN network topology is proposed to enhance the communication performance among the multi-site cloud. A smart virtual machine scheduling mechanism is introduced to reduce performance degradation caused by network delays. The experimental results show that the virtual cluster works well with highly parallel task with low communication among task. Thus, this technology can be used to support many classes of important HPC applications.

关键词： Virtual private networks Overlay networks Virtual machining Servers Rocks Cloud computing Bandwidth

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A survey on hardware-aware and heterogeneous computing on multicore processors and accelerators

A survey on hardware-aware and heterogeneous computing on mu...

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作者： Buchty, Rainer Heuveline, Vincent Karl, Wolfgang Weiss, Jan-Philipp Institute of Computer Science and Engineering Karlsruhe Institute of Technology Karlsruhe Germany Engineering Mathematics and Computing Lab. Institute for Applied and Numerical Mathematics Karlsruhe Institute of Technology Karlsruhe Germany Shared Research Group New Frontiers in High Performance Computing Karlsruhe Institute of Technology Karlsruhe Germany

In the last few years, the landscape of parallel computing has been subject to profound and highly dynamic changes. The paradigm shift towards multicore and manycore technologies coupled with accelerators in a heterogeneous environment is offering a great potential of computing power for scientific and industrial applications. However, for one to take full advantage of these new technologies, holistic approaches coupling the expertise ranging from hardware architecture and software design to numerical algorithms are a pressing necessity. Parallel computing is no longer limited to supercomputers and is now much more diversified - with a multitude of technologies, architectures, and programming approaches leading to increased complexity for developers and engineers. In this work, we give - from the perspective of numerical simulation and applications - an overview of existing and emerging multicore and manycore technologies as well as accelerator concepts. We emphasize the challenges associated with high-performance heterogeneous computing and discuss the interfaces needed to fill the gap between the hardware architecture and the implementation of efficient numerical algorithms. By means of this short survey - which stresses the necessity of hardware-aware computing - we aim at giving assistance to users in scientific computing entering this fascinating field and help understanding associated issues and capabilities. Copyright © 2011 John Wiley & Sons, Ltd.

关键词： Parallel programming

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