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On implementation of an enhanced and integrated parallel programming web-based toolkit

On implementation of an enhanced and integrated parallel pro...

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ITRE 2005 - 3rd International Conference on information Technology: Research and Education

作者： Li, Kuan-Ching Yang, Chao-Tung Parallel and Distributed Processing Center Dept. of Computer Science and Information Management Providence University Shalu Taichung 43301 Taiwan High Performance Computing Laboratory Dept. of Computer Science and Information Engineering Tunghai University Taichung City Taichung 40704 Taiwan

ISBN: (纸本)0780389328

The computing power provided by high performance and low cost PC-based clusters and Grid computing platforms are attractive and they are equal or superior to supercomputers and mainframes. In parallel, discussions on how to obtain more computing power from these computing platforms become an interesting issue. The development of applications for these high-performance computing platforms is complicated for several reasons: The complexity of applications themselves, which combines aspects of supercomputing and distributed computing, and by the need to achieve higher performance. This paper describes the design rationale and implementation of a parallel programming web-based toolkit, to ease the parallel programming learning process, with the use of web-based interface. The toolkit has widely been used in MPI parallel programming courses (both in graduate and undergraduate levels) and industry trainings. © 2005 IEEE.

关键词： computer programming

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The anatomy of a course in cluster and grid computing

The anatomy of a course in cluster and grid computing

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ITRE 2005 - 3rd International Conference on information Technology: Research and Education

作者： Yang, Chao-Tung Li, Kuan-Ching High Performance Computing Laboratory Dept. of Computer Science and Information Engineering Tunghai University Taichung City Taichung 40704 Taiwan Parallel and Distributed Processing Center Dept. of Computer Science and Information Management Providence University Shalu Taichung 43301 Taiwan

ISBN: (纸本)0780389328

Cluster and grid computing is a relatively new interdisciplinary field, where computer science, engineering and computational biology as its core supporting disciplines. The rise of cluster and grid computing discipline brings to computer science faculty members new opportunities and challenges, both in education and in research. In this paper, we will explore issues in teaching Cluster and Grid computing, the developing of curricula, and thoughts to foster student to work on research projects in Cluster and Grid computing. © 2005 IEEE.

关键词： Education

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Using grid computing and PVFS2 technologies for construction of an e-learning environment

Using grid computing and PVFS2 technologies for construction...

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International Conference on Advanced Learning Technologies (ICALT)

作者： Chao-Tung Yang Hsin-Chuan Ho Chien-Tung Pan High-Performance Computing Laboratory Department of Computer Science and Information Engineering Tunghai University Taichung Taiwan

In recent years, e-learning has become a popular method of learning. Generally, an e-learning platform which provided multi-media content required a high capacity storage device such as NAS (network attached storage) or SAN (storage area network). However, many schools with insufficient budgets cannot afford this type of expensive equipment. Thus, we employ grid computing and PVFS (parallel virtual file system) technology to integrate the idling storage resources in the school as a means to substitute the purchase of an expensive high-level storage server. In this research we will link several sets of PCs in the school to make them armed with the storage and computing capacity like that of a high-end server. We hope the goal of sharing and reuse of resources among the schools can be achieved.

关键词： Grid computing Electronic learning Educational institutions Education Space technology Storage area networks Material storage File systems Network servers Video on demand

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A shareable e-learning platform using data grid technology

A shareable e-learning platform using data grid technology

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IEEE International Conference on e-Technology, e-Commerce and e-Service

作者： Chao-Tung Yang Hsin-Chuan Ho Department of Computer Science and Information Engineering High-Performance Computing Laboratory Tunghai University Taichung Taiwan

Over the past decade, speed in the transmission of knowledge is no longer the way it used to be. Due to this influence, conventional educational methodology has also followed this trend and has gone through a momentous transformation. An excellent example is e-learning which has achieved and broken through the restrictions of time and space. In recent years it has become one of the most popular teaching methods. SCORM (Sharable Course Object Reference Model) the most popular e-learning standard has been adapted from many differing e-learning platforms. Normally, courseware meeting SCORM standards is sharable with other e-learning platforms. Most e-learning platforms however are unable to share courseware directly on the Internet. With this in mind, we have employed one type of grid computing technology called "data grid" in order to achieve this. This technology allows the integration of different SCORM platforms into a huge e-learning environment.

关键词： Electronic learning Grid computing Courseware Least squares approximation Education Energy management Internet Educational institutions Content management computer architecture

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performance Evaluation of SLIM and DRBL Diskless PC Clusters on Fedora Core 3

Performance Evaluation of SLIM and DRBL Diskless PC Clusters...

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IEEE International Conference on Parallel and Distributed computing, Applications and Technologies (PDCAT)

作者： Chao-Tung Yang Ping-I Chen Ya-Ling Chen High-Performance Computing Laboratory Department of Computer Science and Information Engineering Tunghai University Taichung Taiwan

In this paper, we introduce our experiments on SLIM and DRBL diskless PC clusters. We constructed them by using 16 machines and only one disk. We run the matrix multiplication and bioinformatics software to evaluate their performance. We find that the performance of SLIM has a great improvement, and the system setup time is much less than before. The network loading of DRBL is also very high. The system boot-up time is no difference between these two systems. The best way to construct the diskless Linux cluster is to eliminate the image size. It can make the nodes have more memory space to handle the program and ease the network loading.

关键词： Linux Network servers Space technology File systems Bioinformatics computer science Software performance Personal communication networks Hard disks Chaos

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On design of cluster and grid computing environment toolkit for bioinformatics applications∗ 6th

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6th International Workshop on Distributed computing, IWDC 2004

作者： Yang, Chao-Tung Kuo, Yu-Lun Li, Kuan-Ching Gaudiot, Jean-Luc High Performance Computing Laboratory Dept. of Computer Science and Information Engineering Tunghai University Taichung40744 Taiwan Parallel and Distributed Processing Center Dept. of Computer Science and Information Management Providence University Taichung43301 Taiwan Parallel and Scalable Computer Architecture Laboratory Dept. of Electrical Engineering and Computer Science University of California – Irvine IrvineCA92697 United States

ISBN: (纸本)9783540240761

In this paper, we present BioGrid, a novel computing resource that combines advantages of grid computing technology with bioinformatics parallel applications. The grid environment permits the sharing of a large amount of idle computing resources and data. The investigation of bioinformatics demands orders of magnitude of computing resources and in parallel, the biological data are growing in such a high speed. By using BioGrid, we plan to integrate and share resources and biological data using the grid computing technology. Still in this paper, the well-known FASTA application is performed as matter of testing and analysis in our grid computing platform, as goal to show the improved efficiency and reduced computation time. © Springer-Verlag Berlin Heidelberg 2004.

关键词： Bioinformatics

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Applying linux high-availability and load balancing servers for video-on-demand (Vod) systems

Applying linux high-availability and load balancing servers ...

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5th Pacific Rim Conference on Multimedia, PCM 2004

作者： Yang, Chao-Tung Wang, Ko-Tzu Li, Kuan-Ching Lee, Liang-Teh High Performance Computing Laboratory Dept. of Computer Science and Information Engineering Tunghai University Taichung407 Taiwan Parallel and Distributed Processing Center Dept. of Computer Science and Information Management Providence University Taichung433 Taiwan Dept. of Computer Science and Engineering Tatung University Taipei104 Taiwan

ISBN: (纸本)9783540239772

In this research paper, we integrate and implement high-Availability (HA) and Load-Balancing technologies to clusters of workstations, increasing both the availability and scalability of services and resources in these systems. The cluster of workstations is commonly built and used as web-based VOD servers. Thus, this paper presents the hardware and software configurations of cluster systems working as VOD servers. © Springer-Verlag Berlin Heidelberg 2004.

关键词： Cluster computing

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performance evaluation of a hybrid wireless network architecture for rural communication

Performance evaluation of a hybrid wireless network architec...

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IEEE International Conference on Personal Wireless Communication

作者： K. Balaji N. Hegde B.V. Ramana B.S. Manoj C.S.R. Murthy High Performance Computing and Networking Laboratory Department of Computer Science and Engineering IIT-Madras India

In this paper, we evaluate the performance of Meghadoot - a packet based wireless mesh network architecture for low cost rural community networks. Meghadoot is designed for rural community networks as an alternative for the single-hop last mile. We have built a prototype network for the Meghadoot architecture and studied the impact of multi-hop relaying and constrained devices on end-to-end throughput. The experimental results show that in certain situations multi-hop last mile improves performance in addition to the enhanced coverage and also the presence of constrained nodes brings down the performance drastically.

关键词： Wireless networks Costs Educational institutions computer architecture Wireless mesh networks Relays Bandwidth Wireless LAN high performance computing Laboratories

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Approximating anatomical brain connectivity with diffusion tensor MRI using kernel-based diffusion simulations

Approximating anatomical brain connectivity with diffusion t...

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19th International Conference on information Processing in Medical Imaging, IPMI 2005

作者： Zhang, Jun Kang, Ning Rose, Stephen E. Laboratory for High Performance Scientific Computing and Computer Simulation Department of Computer Science University of Kentucky Lexington KY 40506-0046 United States Centre for Magnetic Resonance University of Queensland Brisbane QLD 4072 Australia

We present a new technique for noninvasively tracing brain white matter fiber tracts using diffusion tensor magnetic resonance imaging (DT-MRI). This technique is based on performing diffusion simulations over a series of overlapping three dimensional diffusion kernels that cover only a small portion of the human brain volume and are geometrically centered upon selected starting voxels where a seed is placed. Synthetic and real DT-MRI data are employed to demonstrate the tracking scheme. It is shown that the synthetic tracts can be accurately replicated, while several major white matter fiber pathways in the human brain can be reproduced noninvasively as well. The primary advantages of the algorithm lie in the handling of fiber branching and crossing and its seamless adaptation to the platform established by new imaging techniques, such as high angular, q-space, or generalized diffusion tensor imaging. © Springer-Verlag Berlin Heidelberg 2005.

关键词： Brain

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Implementation and evaluation of a Java based computational grid for bioinformatics applications

Implementation and evaluation of a Java based computational ...

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International Conference on Advanced information Networking and Applications (AINA)

作者： Chao-Tung Yang Yi-Chun Hsiung Heng-Chuan Kan High-Performance Computing Laboratory Department of Computer Science and Information Engineering Tunghai University Taichung Taiwan Biotechnology Group South Region Office National Center of High-performance Computing Tainan Taiwan

ISBN: (纸本)0769522491

In the present study, THUBioGrid, an experimental distributed computing application for bioinformatics (BioGrid) is proposed. THUBioGrid incorporates directory services (data and software), grid computing methods (security, authentication, data transport and remote jobs), and gene sequence/genomic data processing methods. It uses Java CoG Kit plus bioinformatics Java packages to perform various computational tasks. The performance of THUBioGrid has been tested by executing the FASTA and mpiBLAST programs for protein sequence alignment applications. Results demonstrate the speed-up effects with increasing number of processors used in the computations.

关键词： Java Grid computing Bioinformatics Application software Distributed computing Data security Authentication Genomics Data processing Packaging

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