Many studies have shown that we can gain additional information on time series by investigating their accompanying complex networks. In this work, we investigate the fundamental topological and fractal properties of r...
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Many studies have shown that we can gain additional information on time series by investigating their accompanying complex networks. In this work, we investigate the fundamental topological and fractal properties of recurrence networks constructed from fractional Brownian motions (FBMs). First, our results indicate that the constructed recurrence networks have exponential degree distributions; the average degree exponent 〈λ〉 increases first and then decreases with the increase of Hurst index H of the associated FBMs; the relationship between H and 〈λ〉 can be represented by a cubic polynomial function. We next focus on the motif rank distribution of recurrence networks, so that we can better understand networks at the local structure level. We find the interesting superfamily phenomenon, i.e., the recurrence networks with the same motif rank pattern being grouped into two superfamilies. Last, we numerically analyze the fractal and multifractal properties of recurrence networks. We find that the average fractal dimension 〈dB〉 of recurrence networks decreases with the Hurst index H of the associated FBMs, and their dependence approximately satisfies the linear formula 〈dB〉≈2−H, which means that the fractal dimension of the associated recurrence network is close to that of the graph of the FBM. Moreover, our numerical results of multifractal analysis show that the multifractality exists in these recurrence networks, and the multifractality of these networks becomes stronger at first and then weaker when the Hurst index of the associated time series becomes larger from 0.4 to 0.95. In particular, the recurrence network with the Hurst index H=0.5 possesses the strongest multifractality. In addition, the dependence relationships of the average information dimension 〈D(1)〉 and the average correlation dimension 〈D(2)〉 on the Hurst index H can also be fitted well with linear functions. Our results strongly suggest that the recurrence network inherits the basic characteristic
作者:
Huang, LinghanShu, ShiYang, Ying
Guangxi Guilin541004 China School of Mathematics and Computational Science
Xiangtan University Hunan Key Laboratory for Computation and Simulation in Science and Engineering Key Laboratory of Intelligent Computing and Information Processing Ministry of Education Hunan Xiangtan411105 China
Guangxi541004 China
The Poisson-Boltzmann equation is a nonlinear elliptic equation with Dirac distribution sources, which has been widely applied to the prediction of electrostatics potential of biological biomolecular systems in soluti...
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The research of two-level overlapping Schwarz (TL-OS) method based on constrained energy minimizing coarse space is still in its infancy, and there exist some defects, e.g. mainly for second order elliptic problem and...
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This paper is dedicated to the numerical solution of a fourth-order singular perturbation problem using the interior penalty virtual element method (IPVEM) proposed in [42]. The study introduces modifications to the j...
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There has been a growing interest in alignment-free methods for whole genome comparison and phylogenomic studies. In this study, we propose an alignment-free method for phylogenetic tree construction using whole-prote...
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There has been a growing interest in alignment-free methods for whole genome comparison and phylogenomic studies. In this study, we propose an alignment-free method for phylogenetic tree construction using whole-proteome sequences. Based on the inter-amino-acid distances, we first convert the whole-proteome sequences into inter-amino-acid distance vectors, which are called observed inter-amino-acid distance profiles. Then, we propose to use conditional geometric distribution profiles (the distributions of sequences where the amino acids are placed randomly and independently) as the reference distribution profiles. Last the relative deviation between the observed and reference distribution profiles is used to define a simple metric that reflects the phylogenetic relationships between whole-proteome sequences of different organisms. We name our method inter-amino-acid distances and conditional geometric distribution profiles (IAGDP). We evaluate our method on two data sets: the benchmark dataset including 29 genomes used in previous published papers, and another one including 67 mammal genomes. Our results demonstrate that the new method is useful and efficient.
A high accurate Rayleigh–Ritz method is developed for solving fractional variational problems (FVPs). The Jacobi poly-fractonomials proposed by Zayernouri and Karniadakis (2013, “Fractional Sturm–Liouville Eigen-Pr...
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A high accurate Rayleigh–Ritz method is developed for solving fractional variational problems (FVPs). The Jacobi poly-fractonomials proposed by Zayernouri and Karniadakis (2013, “Fractional Sturm–Liouville Eigen-Problems: Theory and Numerical Approximation,” J. Comput. Phys.,252(1), pp. 495–517.) are chosen as basis functions to approximate the true solutions, and the Rayleigh–Ritz technique is used to reduce FVPs to a system of algebraic equations. This method leads to exponential decay of the errors, which is superior to the existing methods in the literature. The fractional variational errors are discussed. Numerical examples are given to illustrate the exponential convergence of the method.
In this paper, a class of high-order methods to numerically solve Functional Differential Equations with Piecewise Continuous Arguments (FDEPCAs) is discussed. The framework stems from the expansion of the vector fiel...
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We propose an efficient numerical method for a class of fractional diffusion-wave equations with the Caputo fractional derivative of order α. This approach is based on the finite difference in time and the global sin...
We discuss the cubic spline collocation method with two parameters for solving the initial value problems (IVPs) of fractional differential equations (FDEs). Some results of the local truncation error, the convergence...
作者:
Bin LiuXiaofang LiKey Laboratory of Theoretical Chemistry and Molecular Simulation of Ministry of Education
Hunan Province College Key Laboratory of QSAR/QSPR School of Chemistry and Chemical Engineering Hunan University of Science and Technology Xiangtan Hunan 411201China Key Laboratory of Theoretical Chemistry and Molecular Simulation of Ministry of Education Hunan Province College Key Laboratory of QSAR/QSPR School of Chemistry and Chemical Engineering Hunan University of Science
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