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作者： Geetha, Karuppaiah Anitha, Veerasamy Elhoseny, Mohamed Kathiresan, Shankar Shamsolmoali, Pourya Selim, Mahmoud M. Department of Computer Science & Engineering MIET Engineering College Tamilnadu India Department of Computer Science and Engineering Imayam College of Engineering Anna University ChennaiTamilnadu India Faculty of Computers and Information Mansoura University Mansoura Egypt Scientific Group for Research and Technology Cairo Egypt Department of Computer Applications Alagappa University Karaikudi India Huawei Technologies Corporate Shanghai China. & Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Department of Mathematics Al-Aflaj College of Science and Human Studies Prince Sattam Bin Abdulaziz University Al-Kharj Saudi Arabia

Recently, medical image compression becomes essential to effectively handle large amounts of medical data for storage and communication purposes. Vector quantization (VQ) is a popular image compression technique, and the commonly used VQ model is Linde–Buzo–Gray (LBG) that constructs a local optimal codebook to compress images. The codebook construction was considered as an optimization problem, and a bioinspired algorithm was employed to solve it. This article proposed a VQ codebook construction approach called the L2-LBG method utilizing the Lion optimization algorithm (LOA) and Lempel Ziv Markov chain Algorithm (LZMA). Once LOA constructed the codebook, LZMA was applied to compress the index table and further increase the compression performance of the LOA. A set of experimentation has been carried out using the benchmark medical images, and a comparative analysis was conducted with Cuckoo Search-based LBG (CS-LBG), Firefly-based LBG (FF-LBG) and JPEG2000. The compression efficiency of the presented model was validated in terms of compression ratio (CR), compression factor (CF), bit rate, and peak signal to noise ratio (PSNR). The proposed L2-LBG method obtained a higher CR of 0.3425375 and PSNR value of 52.62459 compared to CS-LBG, FA-LBG, and JPEG2000 methods. The experimental values revealed that the L2-LBG process yielded effective compression performance with a better-quality reconstructed image. © 2020 John Wiley & Sons Australia, Ltd

关键词： Vector quantization

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An Enhanced Coarse-to-Fine Framework for the Segmentation of Clinical Target Volume 23rd

An Enhanced Coarse-to-Fine Framework for the Segmentation of...

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Anatomical Brain Barriers to Cancer Spread: Segmentation from CT and MR images Challenge, ABCs 2020, Learn2Reg Challenge, L2R 2020 and Thyroid Nodule Segmentation and Classification in Ultrasound images Challenge, TN-SCUI 2020 held in conjunction with 23rd International Conference on Medical image Computing and Computer-Assisted Intervention, MICCAI 2020

作者： Chen, Huai Qian, Dahong Liu, Weiping Li, Hui Wang, Lisheng Institute of Image Processing and Pattern Recognition Department of Automation Shanghai Jiao Tong University Shanghai200240 China School of Biomedical Engineering Shanghai Jiao Tong University Shanghai200240 China Department of Algorithm and Research Shanghai Aitrox Technology Co. Ltd. Shanghai China National Key Laboratory of Science and Technology on Nano/Micro Fabrication Key Laboratory for Thin Film and Micro Fabrication of the Ministry of Education Institute of Micro-Nano Science and Technology Shanghai Jiao Tong University Shanghai200240 China

ISBN: (纸本)9783030718268

In radiation therapy, obtaining accurate boundary of the clinical target volume (CTV) is the vital step to decrease the risk of treatment failures. However, it is a time-consuming and laborious task to obtain the delineation by hand. Therefore, an automatic algorithm is urgently needed to realize accurate segmentation. In this paper, we propose an enhanced coarse-to-fine frameworkto automatically fuse the information of CT, T1 and T2 images to get the target region. This framework includes a coarse-segmentation stage to identify the region of interest (ROI) of targets and a fine-segmentation stage to iteratively refine the segmentation. In the coarse-segmentation stage, the F-loss is proposed to keep the high recall rate of the ROI. In the fine segmentation, the ROI of target will be first cropped according to the ROI obtained by coarse-segmentation and be fed into a 3D-Unet to get the initial results. Then, the prediction and medium features will be set as additional information for the next one network to refine the results. When evaluated on the validation dataset of challenge of Anatomical Brain Barriers to Cancer Spread (ABCs), our method won the 3th place in the public leaderboard. © 2021, Springer Nature Switzerland AG.

关键词： Iterative methods

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Universal Adversarial Perturbation Generated by Attacking Layer-wise Relevance Propagation

Universal Adversarial Perturbation Generated by Attacking La...

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International IEEE Conference on Intelligent Systems, IS

作者： Zifei Wang Xiaolin Huang Jie Yang Nikola Kasabov Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Knowledge Engineering and Discovery Research Institute Auckland University of Technology Auckland New Zealand

ISBN: (数字)9781728154565

ISBN: (纸本)9781728154572

The vulnerability of Deep Neural Networks (DNNs) to adversarial attacks has become an important research area of machine learning. It has been known that many state-of-the-art DNNs suffer the risk of universal adversarial perturbations, which are image-agnostic and able to lead misclassifications with high probability. In this paper, we propose a novel method to create such universal adversarial perturbations. Our approach is the first to generate universal perturbations by attacking the attention heat maps with the interpretation method, Layer-wise Relevance Propagation. It is demonstrated that our method achieves high fooling ratios on image classification DNNs pre-trained by imageNet dataset. Moreover, our attack shows good transferability across different DNNs.

关键词： Perturbation methods Heating systems Training Neural networks Machine learning Task analysis Computer architecture

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Partial Differential Equations is All You Need for Generating Neural Architectures - A Theory for Physical Artificial Intelligence Systems

arXiv

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arXiv 2021年

作者： Guo, Ping Huang, Kaizhu Xu, Zenglin Image Processing & Pattern Recognition Lab. Beijing Normal University Beijing100875 China Data Science Research Center Duke Kunshan University Jiangsu Kunshan215316 China School of Computer Science and Technology Harbin Institute of Technology at ShenZhen Peng Cheng National Lab Guangdong Shenzhen510855 China

In this work, we generalize the reaction-diffusion equation in statistical physics, Schrödinger equation in quantum mechanics, and Helmholtz equation in paraxial optics into the neural partial differential equations (NPDE), which can be considered as the fundamental equations in the field of artificial intelligence research. We take the finite difference method to discretize NPDEs for finding the numerical solution. Moreover, the basic building blocks of deep neural network architectures, including multi-layer perceptron, convolutional neural networks, and recurrent neural networks, are generated. The learning strategies, such as Adaptive moment estimation, L-BFGS, pseudoinverse learning algorithms, and partial differential equation constrained optimization, are also developed. This work is of significance in that it presents a clear view of interpretable deep neural networks physically, enables high possibility to be applied to analog computing device design, and paves the road to physical artificial intelligence. © 2021, CC BY-NC-SA.

关键词： Schrodinger equation

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Sparse slow feature analysis for enhanced control monitoring and fault isolation 1

Sparse slow feature analysis for enhanced control monitoring...

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1st International Conference on Industrial Artificial Intelligence, IAI 2019

作者： Shang, Chao Huang, Xiaolin Yang, Fan Huang, Dexian Tsinghua University Beijing National Research Center for Information Science and Technology Beijing100084 China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai200400 China

ISBN: (纸本)9781728135939

This paper presents sparse slow feature analysis (SFA) for efficient process monitoring and fault isolation, which is a new latent variable model for time series data. We first recast sparse SFA in terms of a novel regression-Type problem, and further incorporate l-{1}-norm penalty into the objective in order to promote sparsity. To solve the induced nonconvex optimization problem, a tailored iterative algorithm is developed. With the sparse representation, process variables with insignificant contributions can be completely omitted, and each latent variable relates only to a fraction of crucial process variables in comparison with the generic SFA. A new process monitoring and fault isolation approach is developed based on the sparse SFA, which results in improved monitoring performance, easy-To-interpret diagnostics, and meaningful process knowledge discovery. Case studies on the Tennessee Eastman process are carried out to address the applicability of the proposed approach. © 2019 IEEE.

关键词： Process monitoring

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Trainable Spectrally Initializable Matrix Transformations in Convolutional Neural Networks

Trainable Spectrally Initializable Matrix Transformations in...

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International Conference on pattern recognition

作者： Michele Alberti Angela Botros Narayan Schutz Rolf Ingold Marcus Liwicki Mathias Seuret Document Image and Voice Analysis Group (DIVA) University of Fribourg Switzerland V7 Ltd London United Kingdom ARTORG Center for Biomedical Engineering Research University of Bern Switzerland EISLAB Machine Learning Luleå University of Technology Sweden Pattern Recognition Lab Friedrich-Alexander-Universität Erlangen-Nürnberg Germany

In this work, we introduce a new architectural component to Neural Network (NN), i.e., trainable and spectrally initializable matrix transformations on feature maps. While previous literature has already demonstrated the possibility of adding static spectral transformations as feature processors, our focus is on more general trainable transforms. We study the transforms in various architectural configurations on four datasets of different nature: from medical (ColorectalHist, HAM10000) and natural (Flowers) images to historical documents (CB55). With rigorous experiments that control for the number of parameters and randomness, we show that networks utilizing the introduced matrix transformations outperform vanilla neural networks. The observed accuracy increases appreciably across all datasets. In addition, we show that the benefit of spectral initialization leads to significantly faster convergence, as opposed to randomly initialized matrix transformations. The transformations are implemented as auto-differentiable PyTorch modules that can be incorporated into any neural network architecture. The entire code base is open-source.

关键词： Program processors Discrete Fourier transforms Transforms Documentation pattern recognition Discrete cosine transforms Convolutional neural networks

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A correction method for aero-optics thermal radiation effects based on gradient distribution and dark channel

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Optoelectronics Letters 2019年第5期15卷 374-380页

作者： HONG Han-yu SHI Yu ZHANG Tian-xu LIU Zhao Hubei Key Laboratory of Optical Information and Pattern Recognition Hubei Research Centre of Video Image and High Definition Projection School of Electrical and Information Engineering Wuhan Institute of Technology Wuhan 430074 China National Key Laboratory of Science and Technology on Multi-Spectral Information Processing School of Automation Huazhong University of Science and Technology Wuhan 430074 China

In this paper, a new algorithm is proposed to remove the effects of aerodynamic optical thermal radiation from a single infrared image. In this method, the joint probability model of gradient distribution is introduced by studying the "global smoothing and local fluctuation" characteristics of the bias field. A prior L0 norm of dark channel is introduced to constrain the latent clear image. Finally, the split Bregman method is used to solve the optimization problem. The effectiveness of the proposed method is verified by a series of experiments, and the results are compared with the results of the existing methods for the correction of thermal radiation effects.

关键词： aero-optics thermal radiation effects gradient distribution dark channel

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Medicine-engineering interdisciplinary researches for addiction: Opportunities and challenges

Meta-Radiology

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Meta-Radiology 2023年第2期1卷

作者： Wen, Xinwen Du, Zhe Wang, Zhen Xu, Yu Wang, Kunhua Yu, Dahua Liu, Jun Yuan, Kai School of Life Science and Technology Xidian University Shaanxi Xi'an 710126 China Yunnan University Yunnan Kunming 650500 China Inner Mongolia Key Laboratory of Pattern Recognition and Intelligent Image Processing School of Information Engineering Inner Mongolia University of Science and Technology Inner Mongolia Baotou 014010 China Department of Radiology Second Xiangya Hospital Central South University Changsha 410011 China Engineering Research Center of Molecular and Neuro Imaging Ministry of Education Shaanxi Xi'an 710126 China Xi'an Key Laboratory of Intelligent Sensing and Regulation of Trans-Scale Life Information School of Life Science and Technology Xidian University Shaanxi Xi'an 710126 China

Advances in neuroscience have suggested that addiction is not only an ongoing dynamic transaction between the person, their behavior, and the environment, but a disturbance of neurotransmitters in neurons involved in reward, memory, and cognitive control. Although the neural mechanism of addiction is complex and heterogeneous, previous addiction recovery and treatment studies have proven that addiction is amenable to treatment and recovery. At present, addiction treatment faces great challenges as well as many opportunities. The field of biomedical engineering is and will be at the forefront of these accelerating disciplines based on advances in imaging, genomics, systems medicine, molecular and cellular engineering, and other biomedical sciences. Thus, we propose several perspectives to accelerate the development of advanced and scientific approaches for addiction treatment: early prevention is better than cure and addiction treatment should focus on individualized regulation, whole-body interaction and the translation of effective animal models to human. © 2023 The Authors

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Random features for kernel approximation: A survey on algorithms, theory, and beyond

arXiv

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arXiv 2020年

作者： Liu, Fanghui Huang, Xiaolin Chen, Yudong Suykens, Johan A.K. KU Leuven LeuvenB-3001 Belgium Institute of Image Processing and Pattern Recognition Institute of Medical Robotics Shanghai Jiao Tong University Shanghai200240 China School of Operations Research and Information Engineering Cornell University IthacaNY14850 United States

The class of random features is one of the most popular techniques to speed up kernel methods in large-scale problems. Related works have been recognized by the NeurIPS Test-of-Time award in 2017 and the ICML Best Paper Finalist in 2019. The body of work on random features has grown rapidly, and hence it is desirable to have a comprehensive overview on this topic explaining the connections among various algorithms and theoretical results. In this survey, we systematically review the work on random features from the past ten years. First, the motivations, characteristics and contributions of representative random features based algorithms are summarized according to their sampling schemes, learning procedures, variance reduction properties and how they exploit training data. Second, we review theoretical results that center around the following key question: how many random features are needed to ensure a high approximation quality or no loss in the empirical/expected risks of the learned estimator. Third, we provide a comprehensive evaluation of popular random features based algorithms on several large-scale benchmark datasets and discuss their approximation quality and prediction performance for classification. Last, we discuss the relationship between random features and modern over-parameterized deep neural networks (DNNs), including the use of high dimensional random features in the analysis of DNNs as well as the gaps between current theoretical and empirical results. This survey may serve as a gentle introduction to this topic, and as a users' guide for practitioners interested in applying the representative algorithms and understanding theoretical results under various technical assumptions. We hope that this survey will facilitate discussion on the open problems in this topic, and more importantly, shed light on future research directions. Copyright © 2020, The Authors. All rights reserved.

关键词： Surveys

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Current Progress and Challenges in Large-scale 3D Mitochondria Instance Segmentation

TechRxiv

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TechRxiv 2023年

作者： Franco-Barranco, Daniel Lin, Zudi Jang, Won-Dong Wang, Xueying Shen, Qijia Yin, Wenjie Fan, Yutian Li, Mingxing Chen, Chang Xiong, Zhiwei Xin, Rui Liu, Hao Chen, Huai Li, Zhili Zhao, Jie Chen, Xuejin Pape, Constantin Conrad, Ryan De Folter, Jozefus Nightingale, Luke Jones, Martin L. Liu, Yanling Ziaei, Dorsa Huschauer, Stephan Arganda-Carreras, Ignacio Pfister, Hanspeter Wei, Donglai The Department of Computer Science and Artificial Intelligence University of the Basque Country Donostia-San Sebastian Spain San Sebastian Spain Ikerbasque Basque Foundation for Science Bilbao Spain Biofisika Institute CSIC UPV/EHU Bilbao Spain Harvard University All-ston MA United States The Department of Molecular and Cellular Biology Harvard University CambridgeMA United States The Wellcome Centre for Integrative Neuroimaging FMRIB Nuffield Department of Clinical Neurosciences University of Oxford Oxford United Kingdom University of Science and Technology of China Anhui China The Institute of Image Processing and Pattern Recognition Department of Automation Shanghai Jiao Tong University Shanghai China The National Engineering Laboratory for Brain-inspired Intelligence Technology and Application University of Science and Technology of China Anhui China The Georg-August University Goettingen Germany The Center for Molecular Microscopy Center for Cancer Research National Cancer Institute National Institutes of Health Bethesda United States The Cancer Research Technology Program Frederick National Laboratory for Cancer Research Frederick United States The Francis Crick Institute London United Kingdom The Advanced Biomedical Computational Science Group Frederick National Laboratory for Cancer Research FrederickMD United States The Computer Science Department Boston College Chestnut Hill MA United States

In this paper, we present the results of the MitoEM challenge on mitochondria 3D instance segmentation from electron microscopy images, organized in conjunction with the IEEE-ISBI 2021 conference. Our benchmark dataset consists of two large-scale 3D volumes, one from human and one from rat cortex tissue, which are 3,600 times larger than previously used datasets. At the time of paper submission, 257 participants had registered for the challenge, 14 teams had submitted their results, and six teams participated in the challenge workshop. Here, we present eight top-performing approaches from the challenge participants, along with our own baseline strategies. Posterior to the challenge, annotation errors in the ground truth were corrected without altering the final ranking. Additionally, we present a retrospective evaluation of the scoring system which revealed that (1) the challenge metric was permissive with the false positive predictions and (2) the size-based grouping of instances did not correctly categorize mitochondria of interest. Thus, we propose a new scoring system that better reflects the correctness of the segmentation results. Although several of the top methods are compared favorably to our own baselines, substantial errors remain unsolved for mitochondria with challenging morphologies. Thus, the challenge remains open for submission and automatic evaluation, with all volumes available for download. © 2023, CC BY.

关键词： Electron microscopy

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