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检索条件"机构=Image and Data Analysis Core"
6 条 记 录,以下是1-10 订阅
排序:
UnMICST: Deep learning with real augmentation for robust segmentation of highly multiplexed images of human tissues
Research Square
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Research Square 2021年
作者: Yapp, Clarence Novikov, Edward Jang, Won-Dong Chen, Yu-An Cicconet, Marcelo Maliga, Zoltan Jacobson, Connor A. Wei, Donglai Santagata, Sandro Pfister, Hanspeter Sorger, Peter K. Laboratory of Systems Pharmacology Harvard Medical School BostonMA02115 United States Image and Data Analysis Core Harvard Medical School Human Tumor Atlas Network BostonMA02115 United States School of Engineering and Applied Sciences Harvard University CambridgeMA02138 United States Ludwig Center for Cancer Research at Harvard Harvard Medical School BostonMA02115 United States Department of Pathology Brigham and Women’s Hospital Harvard Medical School BostonMA02115 United States Department of Systems Biology Harvard Medical School BostonMA02115 United States
Newly developed technologies have made it feasible to routinely collect highly multiplexed (20-60 channel) images at subcellular resolution from human tissues for research and diagnostic purposes. Extracting single ce... 详细信息
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Community-developed checklists for publishing images and image analyses
arXiv
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arXiv 2023年
作者: Schmied, Christopher Nelson, Michael S. Avilov, Sergiy Bakker, Gert-Jan Bertocchi, Cristina Bischof, Johanna Boehm, Ulrike Brocher, Jan Carvalho, Mariana Chiritescu, Catalin Christopher, Jana Cimini, Beth A. Conde-Sousa, Eduardo Ebner, Michael Ecker, Rupert Eliceiri, Kevin Fernandez-Rodriguez, Julia Gaudreault, Nathalie Gelman, Laurent Grunwald, David Gu, Tingting Halidi, Nadia Hammer, Mathias Hartley, Matthew Held, Marie Jug, Florian Kapoor, Varun Koksoy, Ayse Aslihan Lacoste, Judith Le Dévédec, Sylvia Le Guyader, Sylvie Liu, Penghuan Martins, Gabriel G. Mathur, Aastha Miura, Kota Llopis, Paula Montero Nitschke, Roland North, Alison Parslow, Adam C. Payne-Dwyer, Alex Plantard, Laure Ali, Rizwan Schroth-Diez, Britta Schütz, Lucas Scott, Ryan T. Seitz, Arne Selchow, Olaf Sharma, Ved P. Spitaler, Martin Srinivasan, Sathya Strambio-De-Castillia, Caterina Taatjes, Douglas Tischer, Christian Jambor, HelenaKlara Fondazione Human Technopole Viale Rita Levi-Montalcini 1 Milano20157 Italy Department of Biomedical Engineering University of Wisconsin-Madison MadisonWI53706 United States Max Planck Institute of Immunobiology and Epigenetics Freiburg79108 Germany Medical BioSciences department Radboud University Medical Centre Nijmegen Netherlands Laboratory for Molecular mechanics of cell adhesions Pontificia Universidad Católica de Chile Santiago Chile Osaka University Graduate School of Engineering Science Japan Euro-BioImaging ERIC Bio-Hub Meyerhofstr. 1 Heidelberg69117 Germany Carl Zeiss AG Carl-Zeiss-Straße 22 Oberkochen73447 Germany BioVoxxel Scientific Image Processing and Analysis Eugen-Roth-Strasse 8 Ludwigshafen67071 Germany Nanophotonics and BioImaging Facility at INL International Iberian Nanotechnology Laboratory 4715-330 Portugal Phi Optics Inc. 1800 S. Oak St Ste 106 ChampaignIL61820 United States Biochemistry Center Heidelberg Heidelberg University Germany Imaging Platform Broad Institute CambridgeMA02142 United States i3S Instituto de Investigação e Inovação Em Saúde and INEB Instituto de Engenharia Biomédica Universidade do Porto Porto Portugal Translational Research Institute Queensland University of Technology 37 Kent Street WoolloongabbaQLD4102 Australia School of Biomedical Sciences Faculty of Health Queensland University of Technology BrisbaneQLD4059 Australia TissueGnostics GmbH Vienna1020 Austria Department of Medical Physics and Biomedical Engineering University of Wisconsin-Madison MadisonWI53706 United States Centre for Cellular Imaging Core Facility Sahlgrenska Academy University of Gothenburg Sweden Allen Institute for Cell Science SeattleWA United States Friedrich Miescher Institute for Biomedical Research Basel Switzerland RNA Therapeutics Institute University of Massachusetts Chan Medical School WorcesterMA01605 United States University of Oklahoma NormanOK United States Advanced Light Microscopy Unit Ce
images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However for scientists wishing to publ... 详细信息
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Author Correction: Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator
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Nature communications 2021年 第1期12卷 1818页
作者: David T Riglar David L Richmond Laurent Potvin-Trottier Andrew A Verdegaal Alexander D Naydich Somenath Bakshi Emanuele Leoncini Lorena G Lyon Johan Paulsson Pamela A Silver Department of Systems Biology Harvard Medical School Boston MA USA. Wyss Institute for Biologically Inspired Engineering Harvard University Boston MA USA. Department of Infectious Disease Imperial College London London UK. Image and Data Analysis Core Harvard Medical School Boston MA USA. Biology Department Concordia University Montreal QC Canada. Harvard John A. Paulson School of Engineering and Applied Sciences Cambridge MA USA. Department of Engineering Cambridge University Cambridge UK. Department of Systems Biology Harvard Medical School Boston MA USA. Pamela_Silver@hms.harvard.edu. Wyss Institute for Biologically Inspired Engineering Harvard University Boston MA USA. Pamela_Silver@hms.harvard.edu.
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Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex (vol 21, pg 120, 2018)
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NATURE NEUROSCIENCE 2018年 第7期21卷 1017-1017页
作者: Hrvatin, Sinisa Hochbaum, Daniel R. Nagy, M. Aurel Cicconet, Marcelo Robertson, Keiramarie Cheadle, Lucas Zilionis, Rapolas Ratner, Alex Borges-Monroy, Rebeca Klein, Allon M. Sabatini, Bernardo L. Greenberg, Michael E. Department of Neurobiology Harvard Medical School Boston MA USA. Society of Fellows Harvard University Cambridge MA USA. Department of Neurobiology Howard Hughes Medical Institute Harvard Medical School Boston MA USA. Image and Data Analysis Core Harvard Medical School Boston MA USA. Department of Systems Biology Harvard Medical School Boston MA USA. Vilnius University Institute of Biotechnology Vilnius Lithuania. ICCB-L Single Cell Core Harvard Medical School Boston MA USA. Program for Bioinformatics and Integrative Genomics Graduate School of Arts and Science Division of Medical Sciences Harvard University Cambridge MA USA. Department of Neurobiology Howard Hughes Medical Institute Harvard Medical School Boston MA USA. bernardo_sabatini@hms.harvard.edu. Department of Neurobiology Harvard Medical School Boston MA USA. michael_greenberg@hms.harvard.edu.
Activity-dependent transcriptional responses shape cortical function. However, a comprehensive understanding of the diversity of these responses across the full range of cortical cell types, and how these changes cont...
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MITI Minimum Information guidelines for highly multiplexed tissue images
arXiv
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arXiv 2021年
作者: Schapiro, Denis Yapp, Clarence Sokolov, Artem Reynolds, Sheila M. Chen, Yu-An Sudar, Damir Xie, Yubin Muhlich, Jeremy Arias-Camison, Raquel Nikolov, Milen Tyler, Madison Lin, Jia-Ren Burlingame, Erik A. Arena, Sarah Chang, Young H. Farhi, Samouil L. Thorsson, Vésteinn Venkatamohan, Nithya Drewes, Julia L. Pe'Er, Dana Gutman, David A. Herrmann, Markus D. Gehlenborg, Nils Bankhead, Peter Roland, Joseph T. Herndon, John M. Snyder, Michael P. Angelo, Michael Nolan, Garry Swedlow, Jason Schultz, Nikolaus Merrick, Daniel T. Mazzilli, Sarah A. Cerami, Ethan Rodig, Scott J. Santagata, Sandro Sorger, Peter K. Laboratory of Systems Pharmacology Ludwig Center for Cancer Research at Harvard Harvard Medical School BostonMA United States Klarman Cell Observatory Broad Institute of MIT and Harvard CambridgeMA United States Institute for Computational Biomedicine and Institute of Pathology Faculty of Medicine Heidelberg University Hospital and Heidelberg University Heidelberg Germany Image and Data Analysis Core Harvard Medical School BostonMA United States Department of Biomedical Informatics Harvard Medical School BostonMA United States Institute for Systems Biology SeattleWA United States Quantitative Imaging Systems LLC PortlandOR United States Memorial Sloan Kettering Cancer Center New YorkNY United States Sage Bionetworks SeattleWA United States Oregon Health and Science University PortlandOR United States Dana-Farber Cancer Institute BostonMA United States Johns Hopkins University School of Medicine BaltimoreMD United States School of Medicine Emory University AtlantaGA30322 United States Department of Pathology Massachusetts General Hospital Harvard Medical School BostonMA United States Edinburgh Pathology Institute of Genetics and Cancer University of Edinburgh Edinburgh United Kingdom Vanderbilt University School of Medicine NashvilleTN United States Washington University School of Medicine Stanford University StanfordCA United States Division of Computational Biology Centre for Gene Regulation and Expression University of Dundee Dundee United Kingdom Pathology University of Colorado AuroraCO United States Boston University MA United States Department of Pathology Brigham and Women's Hospital BostonMA United States Department of Systems Biology Harvard Medical School BostonMA United States
The imminent release of atlases combining highly multiplexed tissue imaging with single cell sequencing and other omics data from human tissues and tumors creates an urgent need for data and metadata standards complia... 详细信息
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Bots for Software-Assisted analysis of image-Based Transcriptomics
Bots for Software-Assisted Analysis of Image-Based Transcrip...
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International Conference on Computer Vision Workshops (ICCV Workshops)
作者: Marcelo Cicconet Daniel R. Hochbaum David L. Richmond Bernardo L. Sabatin Harvard Medical School Boston MA HMS Image and Data Analysis Core HMS Department of Neurobiology Howard Hughes Medical Institute Harvard Medical School Boston MA US
We introduce software assistants - bots - for the task of analyzing image-based transcriptomic data. The key steps in this process are detecting nuclei, and counting associated puncta corresponding to labeled RNA. Our... 详细信息
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