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pattern recognition and Machine Learning (PRML), IEEE International Conference on

作者： Ju Feng Xufeng Ling Yubo Wang Jie Yang School of Artificial Intelligence Shanghai Normal University Tianhua College Shanghai China Shanghai Acoustics Laboratory Chinese Academy of Sciences Shanghai China Institute of Image Processing and Pattern Recognition and Institute of Medical Robotics Shanghai Jiaotong University Shanghai China

Due to the similarity in mushroom features and the difficulty in distinguishing between poisonous and nonpoisonous varieties, mushrooms pose a threat to human health. To address the challenge of mushroom classification and identification, this paper proposes a mushroom classification method based on residual networks. Firstly, a network architecture with multiple residual blocks is designed, and it is trained using an image dataset. Then, a transfer learning strategy is employed to initialize the network parameters from a pre-trained model, followed by fine-tuning to adapt to the mushroom classification task. Finally, multiple testing experiments are conducted to evaluate the effectiveness of the proposed method. The experimental results demonstrate excellent performance of the proposed method in mushroom classification tasks. Compared to traditional feature extraction methods, it can better capture the details and texture features of mushrooms, thereby improving classification accuracy. In conclusion, the mushroom classification method based on residual networks exhibits high accuracy and generalization capability. This method has potential applications in the field of mushroom classification, aiding in the better identification and differentiation of poisonous mushrooms, thereby protecting human health.

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Isoform Function Prediction Based on Heterogeneous Graph Attention Networks

Isoform Function Prediction Based on Heterogeneous Graph Att...

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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Guo, Kuo Li, Yifan Chen, Hao Shen, Hong-Bin Yang, Yang Shanghai Jiao Tong University Key Lab. of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Department of Computer Science and Engineering Shanghai200240 China Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Institute of Image Processing and Pattern Recognition Shanghai200240 China Carnegie Mellon University School of Computer Science Computational Biology Department PittsburghPA15213 United States

ISBN: (纸本)9798350337488

Isoforms refer to different mRNA molecules transcribed from the same gene, which can be translated into proteins with varying structures and functions. Predicting the functions of isoforms is an essential topic in bioinformatics as it can provide valuable insights into the intricate mechanisms of gene regulation and biological processes. Conventionally, gene function labels are standardized in Gene Ontology (GO) terms. However, traditional methods for predicting isoform function are largely limited by the absence of isoform-specific labels, sparse annotations, and the vast number of GO terms. To address these issues, we propose HANIso, a deep learning-based method for isoform function prediction. HANIso leverages a pretrained protein language model to extract features from protein sequences. It also integrates heterogeneous information, such as isoform sequence features, GO annotations, and isoform interaction data, using a Heterogeneous Graph Attention Network (HAN). This allows the model to learn the importance of different sources of information and their semantic relationships through the attention mechanism. Our method can predict function labels at both the gene level and isoform level. We conduct experiments on two species datasets, and the results demonstrate that our method outperforms existing methods on both AUROC and AUPRC. HANIso has the potential to overcome the limitations of traditional methods and provide a more accurate and comprehensive understanding of isoform function. © 2023 IEEE.

关键词： alternative splicing gene ontology heterogeneous graph attention network isoform function prediction protein language model

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SliceProp: A Slice-Wise Bidirectional Propagation Model for Interactive 3D Medical image Segmentation 1

SliceProp: A Slice-Wise Bidirectional Propagation Model for ...

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1st IEEE International Conference on Medical Artificial Intelligence, MedAI 2023

作者： Xu, Xin Lu, Wenjing Lei, Jiahao Qiu, Peng Shen, Hong-Bin Yang, Yang Shanghai Jiao Tong University Key Lab. of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Department of Computer Science and Engineering Shanghai200240 China Shanghai Ninth People's Hospital Shanghai Jiao Tong University School of Medicine Department of Vascular Surgery China Shanghai Jiao Tong University Institute of Image Processing and Pattern Recognition Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai200240 China

ISBN: (纸本)9798350358780

Interactive medical image segmentation methods have become increasingly popular in recent years. These methods combine manual labeling and automatic segmentation, reducing the workload of annotation while maintaining high accuracy. However, most current interactive segmentation frameworks are limited to 2D image data, and are not suitable for 3D image data due to the large size and high complexity of 3D data, as well as the challenges posed by information asymmetry and sparse annotation. In this paper, we propose SliceProp, an interactive segmentation framework that implements slice-wise Label Bidirectional Propagation (LBP) for 3D medical image segmentation. SliceProp extends the interactive 2D image segmentation algorithm to 3D image segmentation, and can handle 3D data with large size and high complexity. Moreover, equipped with a Backtracking Feedback Check (BFC) module, SliceProp effectively addresses the issues of information asymmetry and spatial sparse annotation in 3D medical image segmentation. Additionally, we adopt an uncertainty-based criterion to pri-oritize the slices to be refined interactively, which enhances the efficiency of the interaction process by enabling the model to focus on the regions with the most unreliable predictions. SliceProp is evaluated on two datasets and achieves promising results compared to state-of-the-art methods. © 2023 IEEE.

关键词： Medical imaging

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Object Detector based on Enhanced Multi-scale Feature Fusion Pyramid Network

Object Detector based on Enhanced Multi-scale Feature Fusion...

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IEEE Advanced Information Technology, Electronic and Automation Control Conference (IAEAC)

作者： Luan Zhao Xiaofeng Zhang Key Laboratory of Jiangxi Province for Image Processing and Pattern Recognition Nanchang Hangkong University Nanchang China

ISBN: (数字)9781728180281

ISBN: (纸本)9781728180298

Constructing the pyramidal architecture for the feature is currently a very effective way to obtain feature information of objects at different scales. Although the feature pyramid can realize the recognition and detection of multi-scale objects in the object detection task well, it still has some limitations. Since the feature information of different levels is often not from the same layer of the network, it is difficult to obtain the feature of different objects information at a certain scale from a certain level feature map of the pyramid network. To solve this problem, we present a novel object detection architecture, named Enhanced Multi-scale Feature Fusion Pyramid Network (EMFFPNet). Our network consists of Enhanced Multi-scale Feature Fusion Module (EMFFM) and Predictor Optimization Module (POM). In EMFFM, Features at different levels can be fused into the Enhanced features as outputs, which are more representative and deterministic. In order to enable the enhanced features to play their respective roles in the pyramid network, we assign different weights to fusion features of different levels in POM. We perform the experiments on the COCO detection benchmark. The experimental results indicate that the performance of our model is much better than the state-of-the-art model.

关键词： Object detection Predictive models Feature extraction Task analysis Information technology Optimization Standards

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RBP-Former: Joint Prediction of RNA-protein Binding Sites on Full-length RNA Transcripts for Multiple RBPs

RBP-Former: Joint Prediction of RNA-protein Binding Sites on...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Yichong Li Xiaojian Liu Fan Cheng Xiaoyong Pan Yang Yang Department of Computer Science and Engineering Shanghai Jiao Tong University Shanghai China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai China Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Shanghai China

ISBN: (数字)9798350386226

ISBN: (纸本)9798350386233

RNA-binding proteins (RBPs) are essential for gene expression, and the complex RNA-protein interaction mechanisms require analysis of global RNA information. Therefore, accurate prediction of RBP binding sites on full-length RNA transcripts is crucial for understanding these mechanisms and their roles in diseases. While machine learning methods can predict RBP binding to RNA fragments, extending this to full-length transcripts presents challenges due to sequence length and data imbalance. In this paper, we introduce RBP-Former, a binding site joint prediction model designed specifically for full-length RNA transcripts that can be used for multiple RBPs. This model processes information at both coarse and fine-grained levels to fully exploit sequence data and its interactions with multiple RBPs. We develop multi-level imbalance learning strategies, achieving favorable results on imbalanced data. Our method outperforms existing methods in predicting binding sites on full-length RNA transcripts for multiple RBPs, demonstrating its effectiveness in handling imbalanced label and sample distributions.

关键词： Proteins Protein engineering Accuracy RNA Machine learning Predictive models Data models Gene expression Bioinformatics Diseases

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Enabling Multi-scale Features and Double-Attention for Single-image 3D Urban Reconstruction

Enabling Multi-scale Features and Double-Attention for Singl...

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2021 China Automation Congress, CAC 2021

作者： Miao, Jun Shen, Ji Jiang, Ruixiang Chu, Jun Guo, Luanzheng The School of Aeronautical Manufacturing Engineering Nanchang Hangkong University Nanchang330063 China The Department of Key Laboratory of Jiangxi Province for Image Processing and Pattern Recognition Nanchang Hangkong University Nanchang330063 China The Pacific Northwest National Laboratory WA99354 United States

ISBN: (纸本)9781665426473

3D reconstruction from a single RGB image for urban scenes has been a foundation for safety-critical applications such as autonomous driving and city planning. It is essential to develop 3D reconstruction models that are accurate for these applications. The most recent single-image 3D reconstruction models leverage representative neural networks to address the problem and have achieved promising results. However, these approaches cannot correctly calculate the segmentation map and reconstruct depth for ambiguous scene regions and when scene information gets lost going through down-sampling layers. To solve this problem, we propose EMERALD, an end-to-end single-image 3D reconstruction framework, in which we empower the fully convolutional networks (FCN) with multi-scale contextual features and a novel double-attention mechanism to advance its discrimination capability on ambiguous scene regions and loss of scene details. The evaluation results on two leading urban- scene data sets, Cityscapes (Segmentation Covering (SC)1 of 61.2%) and SYNTHIA (SC of 81.9%), demonstrate the optimized network architecture's effectiveness. © 2021 IEEE

关键词： Network architecture

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SiamORPN: Enabling Orthogonality between Object and Background in Siamese Object Tracking

SiamORPN: Enabling Orthogonality between Object and Backgrou...

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International Conference on Tools for Artificial Intelligence (ICTAI)

作者： Kai Huang Chaolin Pan Jun Chu Lu Leng Jun Miao Junjiang Wu Lingfeng Wang Key Laboratory of Jiangxi Province for Image Processing and Pattern Recognition Nanchang Hangkong University Nanchang China School of Information Science and Technology Beijing University of Chemical Technology Beijing China

Siamese-based trackers currently are the dominant tracking paradigm due to the balance between speed and performance. However, it is prone to drift and tracking failure when the environment is complex and similar objects interfere. While the Siamese-based trackers perform the correlation operation, the responses of the target object and background appear in different channels, i.e., the feature spaces of the target object and background have some orthogonality. However, when meeting background clutters and similar objects interfere, this orthogonality becomes weaker and the wrong classification contribution of the object and the background reduces the stability of the learned similarity function, leading to many misclassified pixels in the heatmaps. In this work, we proposed a SiamORPN to solve the above issues. It is incorporated at two levels: an Orthogonal Region Proposal Network (ORPN) and an Adaptive Pixel-wise Aggregation (APA) module. Specifically, for ORPN, the orthogonality between the object and the background maximizes the inter-class inertia. Moreover, the ORPN introduces the orthogonal module to enhance this orthogonality. For APA, it introduces two lightweight networks to predict the weights of all pixels in different heatmaps and the weights of all pixels in different regression offsets. Experiments on challenging benchmarks, including OTB2015, VOT2016, VOT2018, GOT-10k test set, UAV123, LaSOT, and TrackingNet, demonstrate the proposed SiamORPN outperforms many SOTA trackers and achieves leading performance. The inference speed at GTX1080Ti can reach about 32 FPS, meeting the real-time requirements.

关键词： Heating systems Target tracking Correlation Adaptive systems Benchmark testing Real-time systems Proposals

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Handwritten Mathematical Expression recognition with Self-Attention

Handwritten Mathematical Expression Recognition with Self-At...

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2021年第四届算法、计算和人工智能国际会议

作者： Xueke Chi Da-Han Wang Yuefeng Wu Yun Wu Fujian Key Laboratory of Pattern Recognition and Image Understanding School of Computer and Information Engineering Xiamen University of Technology

Attention-based encoder-decoder models have made great success on handwritten mathematical expression recognition in recent years. However, this kind of method has the problem of attention drift, because under the local attention mechanism based on RNN,the high similarity between coding features can cause attention confusion. To settle this problem, we propose an encoder-decoder model with self-attention, which captures the global information of the feature map and fuses the local information of the CNN as complementary features. Experiments are conducted on the CROHME2014 and CROHME 2016 competition datasets. The experimental results show that, when only using the official training dataset, the proposed method achieves recognition accuracies of51.98% and 50.74% on the CROHME2014 and CROHME2016 competition datasets, respectively, which outperforms the other methods significantly. The improvements demonstrate the effectiveness of the self-attention module.

关键词： offline recognition handwritten mathematical expression selfattention non-local

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An Improved Method for Red Segmentation Based Traffic Sign Detection

An Improved Method for Red Segmentation Based Traffic Sign D...

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International Conference on Information, Communication and Networks (ICICN)

作者： Manal El Baz Taher Zaki Hassan Douzi Image and Pattern Recognition – Intelligent and Communicating Systems Laboratory Faculty of Sciences Ibn Zohr University Agadir Morocco

ISBN: (纸本)9781665411578

The red color segmentation is widely used in image processing especially for traffic sign detection. The color segmentation under variety of light and weather conditions is a challenging task. These conditions make modifications on traffic sign colors. In this paper, we aim to improve the precision of a state-of-the-art method in RGB and HSV spaces. Although the efficiency of this state-of-the-art method, the red segmentation in RGB space has some false positive detections especially at night, and the red segmentation in HSV space detects the black pixels with red pixels as a region of interest. In order to improve the precision of this method, we propose in this paper to combine the two segmentations. We also propose changing the threshold of the red segmentation in HSV to remove non-red pixels and to extract red pixels with low saturation. In addition, we make some modifications on the threshold of the red segmentation in RGB space to improve its performance. The results obtained in experiments show that our method detects more accurately red color of traffic signs under variety of light and weather conditions compared to the state-of-the-art method.

关键词： image segmentation image color analysis Conferences Color Task analysis Meteorology

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ENHANCING KERNEL FLEXIBILITY VIA LEARNING ASYMMETRIC LOCALLY-ADAPTIVE KERNELS

arXiv

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arXiv 2023年

作者： He, Fan He, Mingzhen Shi, Lei Huang, Xiaolin Suykens, Johan A.K. STADIUS Center for Dynamical Systems Signal Processing and Data Analytics KU Leuven Belgium Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China Shanghai Key Laboratory for Contemporary Applied Mathematics School of Mathematical Sciences Fudan University China

The lack of sufficient flexibility is the key bottleneck of kernel-based learning that relies on manually designed, pre-given, and non-trainable kernels. To enhance kernel flexibility, this paper introduces the concept of Locally-Adaptive-Bandwidths (LAB) as trainable parameters to enhance the Radial Basis Function (RBF) kernel, giving rise to the LAB RBF kernel. The parameters in LAB RBF kernels are data-dependent, and its number can increase with the dataset, allowing for better adaptation to diverse data patterns and enhancing the flexibility of the learned function. This newfound flexibility also brings challenges, particularly with regards to asymmetry and the need for an efficient learning algorithm. To address these challenges, this paper for the first time establishes an asymmetric kernel ridge regression framework and introduces an iterative kernel learning algorithm. This novel approach not only reduces the demand for extensive support data but also significantly improves generalization by training bandwidths on the available training data. Experimental results on real datasets underscore the remarkable performance of the proposed algorithm, showcasing its superior capability in handling large-scale datasets compared to Nyström approximation-based algorithms. Moreover, it demonstrates a significant improvement in regression accuracy over existing kernel-based learning methods and even surpasses residual neural networks. Copyright © 2023, The Authors. All rights reserved.

关键词： Bandwidth

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