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Open Data from the Third Observing Run of LIGO, Virgo, KAGRA, and GEO

Astrophysical Journal, Supplement Series 2023年第2期267卷 29-29页

作者： Abbott, R. Abe, H. Acernese, F. Ackley, K. Adhicary, S. Adhikari, N. Adhikari, R.X. Adkins, V.K. Adya, V.B. Affeldt, C. Agarwal, D. Agathos, M. Aguiar, O.D. Aiello, L. Ain, A. Ajith, P. Akutsu, T. Albanesi, S. Alfaidi, R.A. Al-Jodah, A. Alléné, C. Allocca, A. Almualla, M. Altin, P.A. Amato, A. Amez-Droz, L. Amorosi, A. Anand, S. Ananyeva, A. Andersen, R. Anderson, S.B. Anderson, W.G. Andia, M. Ando, M. Andrade, T. Andres, N. Andrés-Carcasona, M. Andrić, T. Ansoldi, S. Antelis, J.M. Antier, S. Aoumi, M. Apostolatos, T. Appavuravther, E.Z. Appert, S. Apple, S.K. Arai, K. Araya, A. Araya, M.C. Areeda, J.S. Arène, M. Aritomi, N. Arnaud, N. Arogeti, M. Aronson, S.M. Arun, K.G. Asada, H. Ashton, G. Aso, Y. Assiduo, M. Assis de Souza Melo, S. Aston, S.M. Astone, P. Aubin, F. AultONeal, K. Babak, S. Badalyan, A. Badaracco, F. Badger, C. Bae, S. Bagnasco, S. Bai, Y. Baier, J.G. Baiotti, L. Baird, J. Bajpai, R. Baka, T. Ball, M. Ballardin, G. Ballmer, S.W. Baltus, G. Banagiri, S. Banerjee, B. Bankar, D. Baral, P. Barayoga, J.C. Barber, J. Barish, B.C. Barker, D. Barneo, P. Barone, F. Barr, B. Barsotti, L. Barsuglia, M. Barta, D. Barthelmy, S.D. Barton, M.A. Bartos, I. Basak, S. Basalaev, A. Bassiri, R. Basti, A. Bawaj, M. Bayley, J.C. Baylor, A.C. Bazzan, M. Bécsy, B. Bedakihale, V.M. Beirnaert, F. Bejger, M. Bell, A.S. Benedetto, V. Beniwal, D. Benoit, W. Bentley, J.D. Ben Yaala, M. Bera, S. Berbel, M. Bergamin, F. Berger, B.K. Bernuzzi, S. Beroiz, M. Berry, C.P.L. Bersanetti, D. Bertolini, A. Betzwieser, J. Beveridge, D. Bevins, N. Bhandare, R. Bhandari, A.V. Bhardwaj, U. Bhatt, R. Bhattacharjee, D. Bhaumik, S. Bianchi, A. Bilenko, I.A. Bilicki, M. Billingsley, G. Bini, S. Birnholtz, O. Biscans, S. Bischi, M. Biscoveanu, S. Bisht, A. Biswas, B. Bitossi, M. Bizouard, M.-A. Blackburn, J.K. Blair, C.D. Blair, D.G. Blair, R.M. Bobba, F. Bode, N. Boër, M. Bogaert, G. Boileau, G. Boldrini, M. Bolingbroke, G.N. Bonavena, L.D. Bondarescu, R. Bondu, F. Bonilla, E. Bonilla, G.S. Bonnand, R. Booker, P. Bork, R. Boschi, V. Bose, N. LIGO Laboratory California Institute of Technology Pasadena 91125 CA United States Graduate School of Science Tokyo Institute of Technology 2-12-1 Ookayama Meguro-ku Tokyo 152-8551 Japan Dipartimento di Farmacia Università di Salerno Salerno Fisciano I-84084 Italy INFN Sezione di Napoli Napoli I-80126 Italy OzGrav School of Physics & Astronomy Monash University Clayton 3800 VIC Australia The Pennsylvania State University University Park 16802 PA United States University of Wisconsin-Milwaukee Milwaukee 53201 WI United States Louisiana State University Baton Rouge 70803 LA United States OzGrav Australian National University Canberra 0200 ACT Australia Max Planck Institute for Gravitational Physics (Albert Einstein Institute) Hannover D-30167 Germany Leibniz Universität Hannover Hannover D-30167 Germany Inter-University Centre for Astronomy and Astrophysics Pune 411007 India University of Cambridge Cambridge CB2 1TN United Kingdom Instituto Nacional de Pesquisas Espaciais São Paulo São José dos Campos 12227-010 Brazil Cardiff University Cardiff CF24 3AA United Kingdom INFN Sezione di Pisa Pisa I-56127 Italy International Centre for Theoretical Sciences Tata Institute of Fundamental Research Bengaluru 560089 India Gravitational Wave Science Project National Astronomical Observatory of Japan 2-21-1 Osawa Mitaka City Tokyo 181-8588 Japan Advanced Technology Center National Astronomical Observatory of Japan 2-21-1 Osawa Mitaka City Tokyo 181-8588 Japan Dipartimento di Fisica Università degli Studi di Torino Torino I-10125 Italy INFN Sezione di Torino Torino I-10125 Italy SUPA University of Glasgow Glasgow G12 8QQ United Kingdom OzGrav University of Western Australia Crawley 6009 WA Australia Univ. Savoie Mont Blanc CNRS Laboratoire d'Annecy de Physique des Particules - IN2P3 Annecy F-74000 France Università di Napoli “Federico II” Napoli I-80126 Italy University of Minnesota Minneapolis 55455 MN United States M

The global network of gravitational-wave observatories now includes five detectors, namely LIGO Hanford, LIGO Livingston, Virgo, KAGRA, and GEO 600. These detectors collected data during their third observing run, O3, composed of three phases: O3a starting in 2019 April and lasting six months, O3b starting in 2019 November and lasting five months, and O3GK starting in 2020 April and lasting two weeks. In this paper we describe these data and various other science products that can be freely accessed through the Gravitational Wave Open Science Center at https://***. The main data set, consisting of the gravitational-wave strain time series that contains the astrophysical signals, is released together with supporting data useful for their analysis and documentation, tutorials, as well as analysis software packages. © 2023. The Author(s). Published by the American Astronomical Society.

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Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals (vol 52, pg 1314, 2020)

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NATURE GENETICS 2021年第5期53卷 762-762页

作者： Surendran, Praveen Feofanova, Elena V. Lahrouchi, Najim Ntalla, Ioanna Karthikeyan, Savita Cook, James Chen, Lingyan Mifsud, Borbala Yao, Chen Kraja, Aldi T. Cartwright, James H. Hellwege, Jacklyn N. Giri, Ayush Tragante, Vinicius Thorleifsson, Gudmar Liu, Dajiang J. Prins, Bram P. Stewart, Isobel D. Cabrera, Claudia P. Eales, James M. Akbarov, Artur Auer, Paul L. Bielak, Lawrence F. Bis, Joshua C. Braithwaite, Vickie S. Brody, Jennifer A. Daw, E. Warwick Warren, Helen R. Drenos, Fotios Nielsen, Sune Fallgaard Faul, Jessica D. Fauman, Eric B. Fava, Cristiano Ferreira, Teresa Foley, Christopher N. Franceschini, Nora Gao, He Giannakopoulou, Olga Giulianini, Franco Gudbjartsson, Daniel F. Guo, Xiuqing Harris, Sarah E. Havulinna, Aki S. Helgadottir, Anna Huffman, Jennifer E. Hwang, Shih-Jen Kanoni, Stavroula Kontto, Jukka Larson, Martin G. Li-Gao, Ruifang Lindstrom, Jaana Lotta, Luca A. Lu, Yingchang Luan, Jian'an Mahajan, Anubha Malerba, Giovanni Masca, Nicholas G. D. Mei, Hao Menni, Cristina Mook-Kanamori, Dennis O. Mosen-Ansorena, David Muller-Nurasyid, Martina Pare, Guillaume Paul, Dirk S. Perola, Markus Poveda, Alaitz Rauramaa, Rainer Richard, Melissa Richardson, Tom G. Sepulveda, Nuno Sim, Xueling Smith, Albert V. Smith, Jennifer A. Staley, James R. Stanakova, Alena Sulem, Patrick Theriault, Sebastien Thorsteinsdottir, Unnur Trompet, Stella Varga, Tibor V. Velez Edwards, Digna R. Veronesi, Giovanni Weiss, Stefan Willems, Sara M. Yao, Jie Young, Robin Yu, Bing Zhang, Weihua Zhao, Jing-Hua Zhao, Wei Zhao, Wei Evangelou, Evangelos Aeschbacher, Stefanie Asllanaj, Eralda Blankenberg, Stefan Bonnycastle, Lori L. Bork-Jensen, Jette Brandslund, Ivan Braund, Peter S. Burgess, Stephen Cho, Kelly Christensen, Cramer Connell, John de Mutsert, Renee Dominiczak, Anna F. Dorr, Marcus Eiriksdottir, Gudny Farmaki, Aliki-Eleni Gaziano, J. Michael Grarup, Niels Grove, Megan L. Hallmans, Goran Hansen, Torben Have, Christian T. Heiss, Gerardo Jorgensen, Marit E. Jousilahti, Pekka Kajantie, Eero Kamat, Mihir Karajamaki, AnneMari Kar British Heart Foundation Cardiovascular Epidemiology Unit Department of Public Health and Primary Care University of Cambridge Cambridge UK British Heart Foundation Centre of Research Excellence University of Cambridge Cambridge UK Health Data Research UK Cambridge Wellcome Genome Campus and University of Cambridge Cambridge UK Rutherford Fund Fellow Department of Public Health and Primary Care University of Cambridge Cambridge UK MRC Biostatistics Unit University of Cambridge Cambridge UK National Institute for Health Research Cambridge Biomedical Research Centre University of Cambridge and Cambridge University Hospitals Cambridge UK MRC Integrative Epidemiology Unit (IEU) Population Health Sciences Bristol Medical School University of Bristol Bristol UK Robertson Centre for Biostatistics University of Glasgow Glasgow UK MRC Epidemiology Unit University of Cambridge School of Clinical Medicine Cambridge UK Department of Immunology and Inflammation Imperial College London London UK Centre for Non-communicable Disease Research (CNCR) Dhaka Bangladesh National Institute for Health Research (NIHR) Blood and Transplant Research Unit (BTRU) in Donor Health and Genomics at the University of Cambridge Cambridge UK Department of Human Genetics Wellcome Sanger Institute Wellcome Genome Campus Hinxton Cambridge UK Department of Biostatistics and Epidemiology Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Center for Non-Communicable Diseases Karachi Pakistan Department of Genetics Novo Nordisk Research Centre Oxford Oxford UK Human Genetics Center Department of Epidemiology Human Genetics and Environmental Sciences School of Public Health University of Texas Health Science Center at Houston Houston TX USA Human Genome Sequencing Center Baylor College of Medicine Houston TX USA Program in Medical and Population Genetics Broad Institute of Harvard and MIT Cambridge MA USA Cardiovascular Research Center Center for Genomic Medicine

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Growth mechanism of Co:TiO2 thin film deposited by metal organic chemical vapor deposition technique

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IOP Conference Series: Materials Science and engineering 2016年第1期128卷

作者： A Saripudin P Arifin Study Program of Electrical Engineering Dept. of Electrical Engineering Education Faculty of Technology and Vocational Universitas Pendidikan Indonesia Jl. Dr. Setiabudi 207 Bandung 40154 West Java Indonesia Physics of Electronics Material Lab. Study Program of Physics Faculty of Mathematics and Natural Science Institut Teknologi Bandung Jl. Ganeca 10 Bandung 40132 West Java Indonesia

In this research, we investigated the growth mechanism of cobalt-doped titanium dioxide (Co:TiO2) films. Thi Co:TiO2 thin films were grown on the n-type silicon substrate. The films were grown by metal organic chemical vapor deposition method. The growth temperature was varied of 325°C – 450°C. The films were characterized by SEM. Using Arheniu's equation, it is known that the activation energy value of film growth is positive in the range of temperature of 325°C – 400°C and negative in the range of temperature of 400°C – 450°C. These results show that the decomposition rate in the range of temperature of 325°C – 400°C is due to diffusion phase of precursor gas. On the other hand, the decomposition rate decreased in the range of temperature of 400°C – 450°C because the precursor gas decreased, and the surface chemical reaction was high.

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The Application of ANN-Linear Perceptron in the Development of DSS for a Fishery Industry

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Procedia Computer Science 2015年 72卷 67-77页

作者： Asep Sholahuddin Agung Pre Ramadhan Asep K. Supriatna Informatics Engineering Study Program Department of Mathematics Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jalan Raya Bandung Sumedang Km. 21 Jatinangor-45363 Indonesia Mathematics Study Program Department of Mathematics Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jalan Raya Bandung Sumedang Km. 21 Jatinangor-45363 Indonesia

Overfishing is a global environmental problem that risks fisheries since many of the fish stock of the fisheries have already reduced to below a tolerable level. One of solutions that often implemented in the fishery management is by calculating the value of Maximum Sustainable Yield (MSY) as the maximum tolerable harvest that can be taken out from the natural stock without harming the population over an indefinite period of time. A proper tool used for computing the MSY is needed to support the fishery manager in solving this decision making problem. In this paper we propose a software development of Decision Support System (DSS) to address such fishery industry problem. The DSS is developed to compute the MSY from the annual yield-effort data of the fishery. We use two sigmoid growth equations, Logistic and Gompertz equations, as the underlying population models, which then are approximated by their discrete forms for computing several growth parameters. Most known methods of growth parameter estimation use a Multiple Linear Regression with Ordinary Least Square method (MLR-OLS). Here we propose the application of Artificial Neural Network with Linear Perceptron method (ANN-LP). A case study in this paper shows that the effectiveness of the proposed ANN-LP is as good as the MLR-OLS in estimating both the growth parameters and the MSY of the fishery in the case study needed in the computation of its MSY by using Artificial Neural Network (ANN) Linear Perceptron.

关键词： DSS MSY Logistic Gompertz ANN Linear Perceptron

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Bioremediation of Aged Petroleum Oil Contaminated Soil: From Laboratory Scale to Full Scale Application

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Procedia Chemistry 2015年 14卷 326-333页

作者： Qomarudin Helmy Rudy Laksmono Edwan Kardena Environmental Engineering Dept Faculty of Civil and Environmental Engineering Institut Teknologi Bandung Ganesha No. 10 BandungWest Java 40132 Indonesia Energy Security Study Program Indonesia Defence University Salemba Raya No. 14 Jakarta 10430 Indonesia

Large quantity of aged petroleum oil contamination such as dehydrated oil sludge, generated in the disposal process of oil-containing sewage in Indonesia. This study aims to investigate the OSCS removal by mean of bioremediation technique. Results found that petrofilic consortia and biosurfactants addition increased the removal efficiency up to 46% and 85%, respectively. At full scale application, this technique succeed in removing of 46 g TPH per kg soil from 4 883 m 3 of OSCS during 16 mo of treatment. These results suggest that petrofilic consortia and biosurfactants addition stimulate the biodegradation and overcome the limitation of OSCS degradation process.

关键词： Biodegradation bioremediation biosurfactant oil sludge petrofilic petroleum.

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Dense sampling of bird diversity increases power of comparative genomics (vol 587, pg 252, 2020)

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NATURE 2021年第7856期592卷 E24-E24页

作者： Feng, Shaohong Stiller, Josefin Deng, Yuan Armstrong, Joel Fang, Qi Reeve, Andrew Hart Xie, Duo Chen, Guangji Guo, Chunxue Faircloth, Brant C. Petersen, Bent Wang, Zongji Zhou, Qi Diekhans, Mark Chen, Wanjun Andreu-Sanchez, Sergio Margaryan, Ashot Howard, Jason Travis Parent, Carole Pacheco, George Sinding, Mikkel-Holger S. Puetz, Lara Cavill, Emily Ribeiro, Angela M. Eckhart, Leopold Fjeldsa, Jon Hosner, Peter A. Brumfield, Robb T. Christidis, Les Bertelsen, Mads F. Sicheritz-Ponten, Thomas Tietze, Dieter Thomas Robertson, Bruce C. Song, Gang Borgia, Gerald Claramunt, Santiago Lovette, Irby J. Cowen, Saul J. Njoroge, Peter Dumbacher, John Philip Ryder, Oliver A. Fuchs, Jerome Bunce, Michael Burt, David W. Cracraft, Joel Meng, Guanliang Hackett, Shannon J. Ryan, Peter G. Jonsson, Knud Andreas Jamieson, Ian G. da Fonseca, Rute R. Braun, Edward L. Houde, Peter Mirarab, Siavash Suh, Alexander Hansson, Bengt Ponnikas, Suvi Sigeman, Hanna Stervander, Martin Frandsen, Paul B. van der Zwan, Henriette van der Sluis, Rencia Visser, Carina Balakrishnan, Christopher N. Clark, Andrew G. Fitzpatrick, John W. Bowman, Reed Chen, Nancy Cloutier, Alison Sackton, Timothy B. Edwards, Scott V. Foote, Dustin J. Shakya, Subir B. Sheldon, Frederick H. Vignal, Alain Soares, Andre E. R. Shapiro, Beth Gonzalez-Solis, Jacob Ferrer-Obiol, Joan Rozas, Julio Riutort, Marta Tigano, Anna Friesen, Vicki Dalen, Love Urrutia, Araxi O. Szekely, Tamas Liu, Yang Campana, Michael G. Corvelo, Andre Fleischer, Robert C. Rutherford, Kim M. Gemmell, Neil J. Dussex, Nicolas Mouritsen, Henrik Thiele, Nadine Delmore, Kira Liedvogel, Miriam Franke, Andre Hoeppner, Marc P. Krone, Oliver Fudickar, Adam M. Mila, Borja Ketterson, Ellen D. Fidler, Andrew Eric Friis, Guillermo Parody-Merino, Angela M. Battley, Phil F. Cox, Murray P. Lima, Nicholas Costa Barroso Prosdocimi, Francisco Parchman, Thomas Lee Schlinger, Barney A. Loiselle, Bette A. Blake, John G. Lim, Haw Chuan Day, Lainy B. Fuxjager, Matthew J. Baldwin, Maude W. Braun, Michael J. Wirthlin, Morgan Dikow, China National GeneBank BGI-Shenzhen Shenzhen China State Key Laboratory of Genetic Resources and Evolution Kunming Institute of Zoology Chinese Academy of Sciences Kunming China BGI-Shenzhen Shenzhen China Villum Centre for Biodiversity Genomics Section for Ecology and Evolution Department of Biology University of Copenhagen Copenhagen Denmark BGI Education Center University of Chinese Academy of Sciences Shenzhen China MOE Laboratory of Biosystems Homeostasis and Protection Life Sciences Institute Zhejiang University Hangzhou China Department of Neuroscience and Developmental Biology University of Vienna Vienna Austria Center for Excellence in Animal Evolution and Genetics Chinese Academy of Sciences Kunming China James D. Watson Institute of Genome Sciences Hangzhou China UC Santa Cruz Genomics Institute UC Santa Cruz Santa Cruz CA USA Natural History Museum of Denmark University of Copenhagen Copenhagen Denmark Center for Macroecology Evolution and Climate GLOBE Institute University of Copenhagen Copenhagen Denmark Department of Biological Sciences Louisiana State University Baton Rouge LA USA Museum of Natural Science Louisiana State University Baton Rouge LA USA Centre of Excellence for Omics-Driven Computational Biodiscovery (COMBio) Faculty of Applied Sciences AIMST University Kedah Malaysia Section for Evolutionary Genomics The GLOBE Institute Faculty of Health and Medical Sciences University of Copenhagen Copenhagen Denmark Institute of Molecular Biology National Academy of Sciences Yerevan Armenia University Museum Norwegian University of Science and Technology Trondheim Norway Center for Reproductive Medicine The 2nd Affiliated Hospital School of Medicine Zhejiang University Hangzhou China Novogene Durham NC USA Duke University Medical Center Durham NC USA The Rockefeller University New York NY USA Howard Hughes Medical Institute Chevy Chase MD USA Department of Dermatology Medical University of Vienna Vienna Austria

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Heart sound feature extraction and classification using autoregressive power spectral density (AR-PSD) and statistics features

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AIP Conference Proceedings 2016年第1期1755卷

作者： Domy Kristomo Risanuri Hidayat Indah Soesanti Adi Kusjani 1Department of Electrical Engineering and Information Technology Faculty of Engineering Gadjah Mada University Jalan Grafika No. 2 Yogyakarta 55281 Indonesia 2Study Program of Computer Engineering STMIK AKAKOM of Yogyakarta Jalan Raya Janti 143 Karang Jambe Yogyakarta 55198 Indonesia

Heart auscultation is a screening method done by listening using a stethoscope for early diagnosis of heart disease, it is low cost and non-invasive, but it has a limitation of human hearing. This paper presents a noise-robust feature extraction method by combining and selecting a heart sound (HS) feature in time and frequency domain. Wavelet decomposition (WD) is used for noise removal. Features are extracted by AR-PSD and used as inputs for classification. The nine types of abnormal HS that were taken from Michigan Heart Sound Database were classified into nine categories. In this research, statistics features in time and frequency domain are used as additional features. Correlation-based Feature Selection (CFS) is used to select the best feature among 13 features extracted. The performance of a new feature set is called Feature Set 3 compared to CFS. The result shows that the proposed feature set achieves the highest level of accuracy.

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Data rate of connections in performing packet delivery of Wireless Mesh Network using Hybrid Wireless Mesh Protocol and Optimized Link State Routing protocol 1

Data rate of connections in performing packet delivery of Wi...

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2014 1st International Conference on Information Technology, Computer, and Electrical engineering, ICITACEE 2014

作者： Putra, Alexander William Setiawan Suhartomo, Antonius Faculty of Engineering Study Program of Electrical Engineering President University Bekasi Indonesia

ISBN: (纸本)9781479964314

Wireless Mesh Network (WMN) relies in routing protocols for route discovery from sender to receiving nodes. There are two routing protocols that are evaluated: Hybrid Wireless Mesh Protocol (HWMP) and Optimized Link State Routing (OLSR). Packet delivery is very crucial in telecommunication. Data rate of connections relate closely with the performance of packet delivery in telecommunication especially WMN. HWMP and OLSR have different mechanisms of route discovery which are affected by the changes of data rate of connections and can affect the packet delivery of data. This experiment focuses in evaluating the performance of both protocols under different conditions of data rate of connections. The objective of this experiment is to evaluate the performance of both protocols and find the relevancy between the results of simulations and theories of the mechanism of both protocols. All of the simulations are done with using Network Simulator Version 3. The simulations are done for more than 100 times in order to get the consistency of the results of simulations and to evaluate the natural behaviors of both protocols. © 2014 IEEE.

关键词： Routing protocols

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Conversion factors for the compressive strength of Self Compacting Concrete (SCC)

Betonwerk und Fertigteil-Technik/Concrete Plant and Precast ...

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Betonwerk und Fertigteil-Technik/Concrete Plant and Precast Technology 2015年第12期81卷 42-51页

作者： Boel, Veerle Craeye, Bart Desnerck, Pieter Van Der Vurst, Farid Van Itterbeeck, Petra De Schutter, Geert University College Ghent Ghent University Study Program of Civil Engineering Technology Belgium University of Antwerp Faculty of Applied Engineering EMIB Research Group Belgium Magnel Laboratory for Concrete Research Ghent University Belgium Vrije Universiteit Brussel Belgium

Different shapes and dimensions of test specimens are used for the determination of the uniaxial compressive strength of concrete. In order to compare strength results conversion formulas are needed. Those formulas are well-known for vibrated concrete (VC), whereas this is not the case for self-compacting concrete (SCC). In the paper, strength ratios of SCC are compared to those for VC as suggested by different standards. In total 24 powder-type SCC mixtures and 2 VC mixtures have been prepared and studied in order to analyze the effect on the strength ratio of several parameters, including the type of cement. The influence of the water-to-cement ratio (W/C), the cement-to-powder ratio (C/P) and the powder content (P) is investigated as well. The same mix procedure is applied in the three laboratories. In the mixtures SCC P520, SCC P560, SCC ref and SCC P640, the powder content varies, while C/P and W/C are kept constant. The effect is studied by replacing gravel by crushed limestone or crushed porphyry. The influence of the water-to-cement ratio, the cement-to-powder ratio, the powder content, the type of cement, the filler, the superplasticizer and the aggregate, on the compressive strength conversion factors seems to be insignificant or too scattered to be considered.

关键词： Self compacting concrete

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Gene expression imputation across multiple brain regions provides insights into schizophrenia risk (vol 51, pg 659, 2019)

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NATURE GENETICS 2019年第6期51卷 1068-1068页

作者： Huckins, Laura M. Dobbyn, Amanda Ruderfer, Douglas M. Hoffman, Gabriel Wang, Weiqing Pardinas, Antonio F. Rajagopal, Veera M. Als, Thomas D. Nguyen, Hoang T. Girdhar, Kiran Boocock, James Roussos, Panos Fromer, Menachem Kramer, Robin Domenici, Enrico Gamazon, Eric R. Purcell, Shaun Demontis, Ditte Borglum, Anders D. Walters, James T. R. O'Donovan, Michael C. Sullivan, Patrick Owen, Michael J. Devlin, Bernie Sieberts, Solveig K. Cox, Nancy J. Im, Hae Kyung Sklar, Pamela Stahl, Eli A. Pamela Sklar Division of Psychiatric Genomics Icahn School of Medicine at Mount Sinai New York NY USA Department of Genetics and Genomics Icahn School of Medicine at Mount Sinai New York NY USA Department of Psychiatry Icahn School of Medicine at Mount Sinai New York NY USA Icahn Institute for Genomics and Multiscale Biology Icahn School of Medicine at Mount Sinai New York NY USA Vanderbilt University Medical Center Nashville TN USA MRC Centre for Neuropsychiatric Genetics and Genomics Cardiff University Cardiff UK Department of Biomedicine Aarhus University Aarhus Denmark The Lundbeck Foundation Initiative for Integrative Psychiatric Research iPSYCH Denmark Center for Integrative Sequencing Aarhus University Aarhus Denmark Department of Human Genetics David Geffen School of Medicine University of California Los Angeles Los Angeles CA USA Human Brain Collection Core National Institute of Mental Health Bethesda MD USA Laboratory of Neurogenomic Biomarkers Centre for Integrative Biology (CIBIO) University of Trento Trento Italy Clare Hall University of Cambridge Cambridge UK University of North Carolina at Chapel Hill Chapel Hill NC USA Karolinska Institutet Stockholm Sweden Department of Psychiatry University of Pittsburgh Pittsburgh PA USA Systems Biology Sage Bionetworks Seattle WA USA Section of Genetic Medicine Department of Medicine University of Chicago Chicago IL USA Integrated Technology Research Laboratories Pharmaceutical Research Division Takeda Pharmaceutical Company Limited Fujisawa Japan Neuropsychiatry Section Department of Psychiatry Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Neuropsychiatric Signaling Program Department of Psychiatry Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Psychiatry JJ Peters Virginia Medical Center Bronx NY USA Department of Neuroscience Icahn School of Medicine at Mount Sinai New York New York NY USA Friedman Brain Institute

Transcriptomic imputation approaches combine eQTL reference panels with large-scale genotype data in order to test associations between disease and gene expression. These genic associations could elucidate signals in complex genome-wide association study (GWAS) loci and may disentangle the role of different tissues in disease development. We used the largest eQTL reference panel for the dorso-lateral prefrontal cortex (DLPFC) to create a set of gene expression predictors and demonstrate their utility. We applied DLPFC and 12 GTEx-brain predictors to 40,299 schizophrenia cases and 65,264 matched controls for a large transcriptomic imputation study of schizophrenia. We identified 413 genic associations across 13 brain regions. Stepwise conditioning identified 67 non-MHC genes, of which 14 did not fall within previous GWAS loci. We identified 36 significantly enriched pathways, including hexosaminidase-A deficiency, and multiple porphyric disorder pathways. We investigated developmental expression patterns among the 67 non-MHC genes and identified specific groups of pre- and postnatal expression.

关键词： Gene expression Genome-wide association studies Schizophrenia Transcriptomics

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