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24th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2024

作者： Chen, Yun-Chi Chao, Tung Phandita, Wimaya Nitya Sun, Tzu-Yu Wang, Huai-Zhi Hsieh, Yi-Hsien Hsu, Le-Yin Lin, Che Taipei Taiwan College of Bioresources and Agriculture NTU Taipei Taiwan National Taiwan University of Science and Technology Department of Computer Science and Information Engineering Taipei Taiwan Graduate Institute of Communication Engineering NTU Taipei Taiwan NTU Data Science Degree Program Taipei Taiwan NTU Department of Electrical Engineering Taipei Taiwan Center for Advanced Computing and Imaging in Biomedicine NTU Taipei Taiwan NTU Smart Medicine and Health Informatics Program Taipei Taiwan

ISBN: (纸本)9798331518622

Microsatellite instability (MSI) is a pivotal genetic marker influencing the efficacy of immunotherapy in colorectal cancer. Traditional MSI examination often requires additional genetic or immunohistochemical tests, whereas histology images, widely available in colorectal cancer diagnosis, offer a valuable alternative for MSI prediction. Although Transformer-based models have demonstrated promising outcomes in predicting MSI from histology images, they are hampered by traditional local attention mechanisms that struggle to capture long-range interdependencies and establish a comprehensive global receptive field. In this study, we introduce DiNAT-MSI, a novel framework for histology-based MSI prediction that incorporates the Dilated Neighborhood Attention Transformer (DiNAT). This model enhances global context recognition and substantially expands receptive fields, all without additional computational burden. Our results demonstrate that DiNAT-MSI achieves a superior patientwise AUROC compared to ResNet18 and Swin Transformer, along with commendable explainability. Our work not only illustrates a more accessible diagnostic tool for leveraging histological data but also underscores the potential of Transformerbased models with sophisticated attention designs in advancing precision medicine for colorectal cancer patients. © 2024 IEEE.

关键词： Diseases

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A Multi-phase Deep Learning Approach for Predicting HCC Response to TACE using Complete Computed Tomography

A Multi-phase Deep Learning Approach for Predicting HCC Resp...

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2023 IEEE EMBS Special Topic Conference on Data Science and engineering in Healthcare, Medicine and Biology, IEEECONF 2023

作者： Chang, Shun Cheng Liu, Chien Fu Misztal, Marta Hsieh, Yi Hsien Lin, Che Taiwan School of Electronic Engineering and Computer Science Queen Mary University of London United Kingdom Department of Electrical Engineering Ntu Taiwan Center for Computational and Systems Biology Center for Biotechnology Ntu Taiwan Smart Medicine and Health Informatics Program Ntu Taiwan

ISBN: (纸本)9798350383386

In this research study, we compare the predictive performance of two advanced deep learning-based models in order to provide a solution to TACE (Transarterial Chemoembolization) response prediction in HCC (Hepatocellular Carcinoma) patients. Using entire abdominal CT scans enabled a broader perspective available for the model, eliminating the need for segmentation during the preprocessing. Making use of both single-phase and multi-phase CT imaging, we have used DenseNet121 and have obtained an accuracy of 80% for the multi-phase *** Relevance: The ability to predict the effectiveness of TACE treatment prior to its administration makes it possible to provide a better decision-making aid for physicians and patients. © 2023 IEEE.

关键词： Computerized tomography

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Diabetes Classification Problem with CatBoost Method and Optuna Gradient Boosting Optimization 6

Diabetes Classification Problem with CatBoost Method and Opt...

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6th International Conference on Information and Communications Technology, ICOIACT 2023

作者： Kurniawan, Safar Dwi Purwono, Purwono Ma'arif, Alfian Suwarno, Iswanto Politeknik Harapan Bersama Department of Computer Engineering Tegal Indonesia Universitas Harapan Bangsa Department of Informatics Purwokerto Indonesia Universitas Ahmad Dahlan Department of Electrical Engineering Yogyakarta Indonesia Universitas Muhammadiyah Yogyakarta Department of Engineer Professional Program Yogyakarta Indonesia

ISBN: (纸本)9798350315639

Diabetes mellitus is a dangerous global epidemic that can cause kidney failure, heart attack, blindness, and death. The main cause of this disease is too high blood sugar levels due to the irrelevant work of pancreatic beta cells. Rapid computer technology advances and implementations based on artificial intelligence have penetrated various fields, especially the health sector. Data mining and machine learning are technologies that continue to grow, are reliable, and can be used as research support tools in the medical field. This technology is considered capable of helping to automate diabetes prediction. Based on related research, our contribution to this research is to utilize the CatBoost method with Optuna optimization. In the data preprocessing stage, all 768 data sets have gone through removing outliers, normalizing features to reducing dimensions. The dataset is divided into 85\% composition for training data and 15\% for test data. At the feature selection stage with Correlation Pearson's, we found that Glucose correlated with diabetes outcome or disease because it had a value range of 0.47. The results' accuracy is considered less than optimal because it only produces an accuracy value below 80%, even after optimization with Optuna. It can be seen that there was only an increase of 7\% after optimizing with Optuna. © 2023 IEEE.

关键词： Data mining

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Deep neural network ensembles for remote sensing land cover and land use classification

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International Journal of Digital Earth 2021年第12期14卷 1868-1881页

作者： Burak Ekim Elif Sertel Institute of Informatics Satellite Communication and Remote Sensing ProgramIstanbul Technical UniversityIstanbulTurkey Department of Geomatics Engineering Istanbul Technical UniversityIstanbulTurkey

With the advancement of satellite technology,a considerable amount of very high-resolution imagery has become available to be used for the Land Cover and Land Use(LCLU)classification task aiming to categorize remotely sensed images based on their semantic ***,Deep Neural Networks(DNNs)have been widely used for different applications in the field of remote sensing and they have profound impacts;however,improvement of the generalizability and robustness of the DNNs needs to be progressed further to achieve higher accuracy for a variety of sensing geometries and *** address this problem by deploying three different Deep Neural Network Ensemble(DNNE)methods and creating a comparative analysis for the LCLU classification *** enables improvement of the performance of DNNs by ensuring the diversity of the models that are ***,enhances the generalizability of the models and produces more robust and generalizable outcomes for LCLU classification *** experimental results on NWPU-RESISC45 and AID datasets demonstrate that utilizing the aggregated information from multiple DNNs leads to an increase in classification performance,achieves state-of-the-art,and promotes researchers to make use of DNNE.

关键词： Classification convolutional neural networks(CNN) deep neural network ensembles(DNNE) land cover and land use(LCLU) remote sensing

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Kano Model Analysis of Android Apps Quality from End User's Preferences 3

Kano Model Analysis of Android Apps Quality from End User's ...

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3rd International Conference on Electrical, Electronics, informatics, and Vocational Education, ICE-ELINVO 2020

作者： Putra, R.A.S. Priyanto Electronics and Informatics Engineering Education Postgraduate Program Yogyakarta State University Indonesia

This study aimed to explore the end user's preferences regarding the features of an android app by classifying them with the Kano Model. The list of features was based on ISO/IEC 25010 combined with Android Core App Quality Guidelines. This expert system android app which is named 'Pilih Media' is used to help teachers selecting learning media based on Anderson's theory of learning media selection. Respondents in this study were 50 teachers. Kano model was used in this study as a guideline in making questionnaires and also analyzing the data. From the study, it can be concluded that there are 17 features classified as the Attractive requirement category, six features classified as One-dimensional category, one feature classified as Must-be category, and five features classified as the Indifferent category. Overall, it seems that a lot of features have the potential to increase the end user's satisfaction. © 2021 Published under licence by IOP Publishing Ltd.

关键词： Expert systems

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Internet of Things-based Hydroponic: Literature Review 4

Internet of Things-based Hydroponic: Literature Review

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4th International Conference on Electrical, Electronics, informatics, and Vocational Education, ICE-ELINVO 2021

作者： Hadinata, Alan Mashoedah Graduate Program of Electronics and Informatics Engineering Education State University of Yogyakarta Indonesia

Hydroponics is a method of growing crops without using soil, with the benefits of controlling the environment and nutrients, conserving water, and reducing labor. The applied technology is used to improve results that have consistency. This research was conducted with the aim of knowing the IoT devices and platforms used in the development of IoT-based hydroponics. Data obtained from the website *** and *** from 2016 to 2021. This study is a literature review using the PRISMA method. This method is used for literature review using a systematic and structured basic framework. The results of this study indicate that the variables measured are Temperature, Potential Hydrogen (pH), Total Dissolve Solid, Water Temperature, Humidity, UV, Carbon Dioxide, Soil Moisture and Electrical Conductivity. The device used is the ESP8266, Arduino, and Raspberry PI with the MySQL, Thingspeak, Firebase, Domoticz, and Wyliodrin IoT Platforms. © 2021 Institute of Physics Publishing. All rights reserved.

关键词： Hydroponics

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Estimation Algorithms for MLE of Three-Mode GMANOVA Model with Kronecker Product Covariance Matrix 15th

Estimation Algorithms for MLE of Three-Mode GMANOVA Model ...

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15th International KES Conference on Intelligent Decision Technologies, KESIDT 2023

作者： Horikawa, Keito Nagai, Isamu Monden, Rei Yanagihara, Hirokazu Informatics and Data Science Program Graduate School of Advanced Science and Engineering Hiroshima University Hiroshima Higashi-Hiroshima739-8521 Japan Faculty of Liberal Arts and Science Chukyo University Aichi Nagoya466-8666 Japan Mathematics Program Graduate School of Advanced Science and Engineering Hiroshima University Hiroshima Higashi-Hiroshima739-8526 Japan

ISBN: (纸本)9789819929689

Currently, there are a lot of measurement data on different items collected over time. The GMANOVA model is appropriate for analyzing the trends in such data, in order to analyze some longitudinal data collected on different items simultaneously, we need to create separate GMANOVA models, but separate GMANOVA models cannot reveal the relationships between items. Also, if we try to apply one model to all of these data, the problem arises that there are too many parameters and the covariance structure is too large. Therefore, we propose an extended GMANOVA model and two estimation algorithms. The proposed model’s covariance matrix has a Kronecker structure. Therefore, because the estimator cannot be uniquely determined using the log-likelihood, we propose two parameter estimation algorithms. © 2023, The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.

关键词： Covariance matrix

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Synthesis of coral-like structures of Pr-Yb co-doped YIG: Structural,optical, magnetic and antimicrobial properties

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Journal of Rare Earths 2024年第3期42卷 543-554,I0004页

作者： A.Fernandez Francisca P.Araujo Y.Guerra S.Castro-Lopes J.Matilla-Arias Idglan S.de Lima Edson C.Silva-Filho Josy A.Osajima F.Guerrero R.Pena-Garcia Federal University of Piau Graduate Program in Materials Science and EngineeringTeresinaPIBrazil Federal Rural University of Pernambuco Academic Unit of Cabo de Santo AgostinhoCabo de Santo AgostinhoPEBrazil Federal University of Piaui Department of PhysicTeresinaPBrazil Federal University of Pernambuco Graduate Program in Materials ScienceRecifePEBrazil University of Granma Departmentof Basic Sciences and Applied InformaticsFaculty of Technical SciencesBayamoCuba Federal University of Amazonas Department of PhysicManausAMBrazil Federal University of Pernambuco Department of PhysicRecifePEBrazil

Coral-like structures of the Y_(3-x)Pr_(x)Fe_(5-y)Yb_(y)O_(12),(0.00 ≤ x ≤ 0.04, 0.00 ≤ y ≤ 0.02) compound were synthesized using the sol-gel method. Structural investigation certified the YIG cubic crystal structure formation, without any secondary phase. It is shown that, the relatively large ionic radius of the dopant cations results in an expansion of the lattice parameter, variations in the Iona-O-Iondangle, Iona-O,Iond-O and Ionc-O bond distances and decrease in the average crystallite size. Fourier transform infrared(FTIR) and Raman measurements are essential to testify the single-phase formation of YIG crystal structure and are observed changes in the stretching and vibrational modes, respectively. The morphological study, energy dispersive spectroscopy(EDS) spectra and textural properties show corallike structures, peaks associated with Pr^(3+) and Yb^(3+) atoms and the effect of dopants on surface area,diameter, and pore volume, respectively. The optical analysis from diffuse reflectance spectra witnessed an increase in the optical gap band, a decrease in Urbach energy and blue shift in the charge transfer,correlated with the expansion of the unit cell due to the dopant's insertion in the YIG structure. A typical ferrimagnetic behavior is exhibited by the Y_(3-x)Pr_(x)Fe_(5-y)Yb_(y)O_(12)compound. The saturation magnetization(M_(s)), cubic anisotropy constant(K_(1)) and coercive field(H_(c)) increase with the Pr^(3+)cations content, as consequence of their magnetic nature and distribution around of Fe^(3+)ions due to the coexistence with the Yb^(3+). Finally, for the first time, antibacterial tests by mean of the direct contact method were performed for YIG co-doped with Pr^(3+)and Yb^(3+)and it is shown that, relatively high dosages of Pr^(3+) cations favored the activity against S. aureus, therefore, a new biological property for YIG doped with rare earths is presented.

关键词： Yttrium iron garnet(YIG) Coral-like structures Rare earths Band gap energy Magnetic properties Antimicrobial properties

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Implications of the Usage of Three-Mode Principal Component Analysis with a Fixed Polynomial Basis 15th

Implications of the Usage of Three-Mode Principal Compone...

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15th International KES Conference on Intelligent Decision Technologies, KESIDT 2023

作者： Monden, Rei Nagai, Isamu Yanagihara, Hirokazu Informatics and Data Science Program Graduate School of Advanced Science and Engineering Hiroshima University Hiroshima Higashi-Hiroshima739-8521 Japan Faculty of Liberal Arts and Science Chukyo University Aichi Nagoya466-8666 Japan Mathematics Program Graduate School of Advanced Science and Engineering Hiroshima University Hiroshima Higashi-Hiroshima739-8526 Japan

ISBN: (纸本)9789819929689

When I subjects answer questions regarding J variables K times, the data can be stored in a three-mode data set of size I× J× K. Among the various component analysis approaches to summarize such data, Three-mode Principal Component Analysis (3MPCA) is often used. 3MPCA expresses a three-mode data set by means of A-, B-, and C-mode components and a core array, but this approach is not suitable for predicting data at unobserved time points. To handle this issue, the current study suggests a fixed orthonormal polynomial basis for the 3MPCA model. Briefly, we fix the C-mode component matrix with an orthonormal polynomial basis. More specifically, i) measurement time points, and ii) log transformation of the measurement time points were used as an orthonormal polynomial basis. The use of our proposed methods was demonstrated by applying them to a longitudinal data set collected from patients with depression. © 2023, The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.

关键词： Principal component analysis

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GPU-Based Acceleration of the Rao Optimization Algorithms: Application to the Solution of Large Systems of Nonlinear Equations 24th

GPU-Based Acceleration of the Rao Optimization Algorithms:...

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24th International Conference on Intelligent Data engineering and Automated Learning, IDEAL 2023

作者： Silva, Bruno Lopes, Luiz Guerreiro Doctoral Program in Informatics Engineering University of Madeira Madeira Is. Funchal Portugal Regional Secretariat for Education Science and Technology Regional Government of Madeira Funchal Portugal Faculty of Exact Sciences and Engineering University of Madeira Madeira Is. Funchal9020-105 Portugal

ISBN: (纸本)9783031482311

In this paper, parallel GPU-based versions of the three Rao metaphor-less optimization algorithms are proposed and used to solve large-scale nonlinear equation systems, which are hard to solve with traditional numerical methods, particularly as the size of the systems get bigger. The parallel implementations of the Rao algorithms were performed in Julia and tested on a high-performance GeForce RTX 3090 GPU with 10 496 CUDA cores and 24 GB of GDDR6X VRAM using a set of challenging scalable systems of nonlinear equations. The computational experiments carried out demonstrated the efficiency of the proposed GPU-accelerated versions of the Rao optimization algorithms, with average speedups ranging from 57.10 × to 315.12 × for the set of test problems considered in this study. © The Author(s), under exclusive license to Springer Nature Switzerland AG 2023.

关键词： Graphics processing unit

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