检索结果-内蒙古大学图书馆

SSRN 2024年

作者： Hu, Fuyuan Zhang, Jian Lyu, Fan Zhao, Linglan Liu, Chengyan Zhang, Tao Yu, Baoqing School of Electronics and Information Engineering Suzhou University of Science and Technology No.99 Xuefu Road Jiangsu Suzhou215000 China Jiangsu Industrial Intelligent Low Carbon Technology Engineering Center Jiangsu Suzhou215009 China Suzhou Key Laboratory of Intelligent Low Carbon Technology Application Jiangsu Suzhou215009 China New Laboratory of Pattemn Recognition Institute of Automation Chinese Academy of Sciences College of Intelligence and Computing No.95 Zhongguancun East Road Beijing100190 China Tencent Youtu Lab Shanghai201600 China Seventh People’s Hospital Shanghai University of Traditional Chinese Medicine No.358 Datong Road Pudong New District Shanghai200137 China

Few-shot class-incremental learning (FSCIL) aims to build machine learning models that can continually learn novel classes from a few training samples, without forgetting knowledge of old classes. The challenges of FSCIL lie in the limited data of novel classes, which not only lead to significant overfitting issues but also exacerbate the notorious catastrophic forgetting problems. As proved in early studies, building sample relationships is beneficial for learning from few-shot classes. In this paper, we advance the idea to the incremental scenario and propose a Sample-to-Class (S2C) graph learning method for FSCIL. Concretely, we propose a Sample-level Graph Network (SGN) that focuses on analyzing sample relationships within a single session. This network helps aggregate similar samples, ultimately leading to the extraction of more refined class-level features. Then, we present a Class-level Graph Network (CGN) that establishes connections across class-level features of both novel and old classes. This network plays a crucial role in linking the knowledge between different sessions and helps improve overall learning performance in the FSCIL scenario. Moreover, we design a multi-stage strategy for training the S2C model, which mitigates the training challenges posed by limited data in the incremental learning process. The multi-stage training strategy is designed to build an S2C graph from base to incremental sessions and improve the capacity via an extra pseudo-incremental stage. Extensive experiments on three popular benchmark datasets show that our method outperforms the baselines and sets new state-of-the-art results in FSCIL. Our codes will be available upon acceptance. © 2024, The Authors. All rights reserved.

关键词： Contrastive Learning

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Tumor Detection, Segmentation and Classification Challenge on Automated 3D Breast Ultrasound: The TDSC-ABUS Challenge

arXiv

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arXiv 2025年

作者： Luo, Gongning Xu, Mingwang Chen, Hongyu Liang, Xinjie Tao, Xing Ni, Dong Jeong, Hyunsu Kim, Chulhong Stock, Raphael Baumgartner, Michael Kirchhoff, Yannick Rokuss, Maximilian Maier-Hein, Klaus Yang, Zhikai Fan, Tianyu Boutry, Nicolas Tereshchenko, Dmitry Moine, Arthur Charmetant, Maximilien Sauer, Jan Du, Hao Bai, Xiang-Hui Raikar, Vipul Pai Montoya-Del-Angel, Ricardo Martí, Robert Luna, Miguel Lee, Dongmin Qayyum, Abdul Mazher, Moona Guo, Qihui Wang, Changyan Awasthi, Navchetan Zhao, Qiaochu Wang, Wei Wang, Kuanquan Wang, Qiucheng Dong, Suyu School of Computer Science and Technology Harbin Institute of Technology Harbin150001 China Department of Mathematics Faculty of Science National University of Singapore Singapore National-Regional Key Technology Engineering Laboratory for Medical Ultrasound School of Biomedical Engineering Shenzhen University Medical School Shenzhen University Shenzhen China Laboratory Shenzhen University Shenzhen China School of Biomedical Engineering and Informatics Nanjing Medical University Nanjing China Pohang Korea Republic of Heidelberg Division of Medical Image Computing Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Germany Heidelberg Germany HIDSS4Health - Helmholtz Information and Data Science School for Health Karlsruhe Heidelberg Germany Pattern Analysis and Learning Group Department of Radiation Oncology Heidelberg University Hospital Germany Department of Biomedical Engineering and Health KTH Royal Institute of Technology Stockholm Sweden France FathomX Singapore Saw Swee Hock School of Public Health National University of Singapore Singapore Philips Research University of Girona Spain Department of Robotics and Mechatronics Engineering DGIST Korea Republic of Department of Interdisciplinary Studies of Artificial Intelligence DGIST Korea Republic of National Heart and Lung Institute Faculty of Medicine Imperial College London London United Kingdom Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom Lab School of Communication and Information Engineering Shanghai University Shanghai China Faculty of Science Mathematics and Computer Science Informatics Institute University of Amsterdam Amsterdam1090 GH Netherlands Department of Biomedical Engineering and Physics Amsterdam UMC Amsterdam1081 HV Netherlands Xi’an Jiaotong-Liverpool University China Department of Ultrasound Harbin Medical University Cancer Hospital No. 150 Haping Road Nangang

Breast cancer is one of the most common causes of death among women worldwide. Early detection helps in reducing the number of deaths. Automated 3D Breast Ultrasound (ABUS) is a newer approach for breast screening, which has many advantages over handheld mammography such as safety, speed, and higher detection rate of breast cancer. Tumor detection, segmentation, and classification are key components in the analysis of medical images, especially challenging in the context of 3D ABUS due to the significant variability in tumor size and shape, unclear tumor boundaries, and a low signal-to-noise ratio. The lack of publicly accessible, well-labeled ABUS datasets further hinders the advancement of systems for breast tumor analysis. Addressing this gap, we have organized the inaugural Tumor Detection, Segmentation, and Classification Challenge on Automated 3D Breast Ultrasound 2023 (TDSC-ABUS2023). This initiative aims to spearhead research in this field and create a definitive benchmark for tasks associated with 3D ABUS image analysis. In this paper, we summarize the top-performing algorithms from the challenge and provide critical analysis for ABUS image examination. We offer the TDSC-ABUS challenge as an open-access platform at https://***/ to benchmark and inspire future developments in1algorithmic research. © 2025, CC BY.

关键词： Image segmentation

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Resistive memory-based zero-shot liquid state machine for multimodal event data learning

arXiv

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arXiv 2023年

作者： Lin, Ning Wang, Shaocong Li, Yi Wang, Bo Shi, Shuhui He, Yangu Zhang, Woyu Yu, Yifei Zhang, Yue Zhang, Xinyuan Wong, Kwunhang Wang, Songqi Chen, Xiaoming Jiang, Hao Zhang, Xumeng Lin, Peng Xu, Xiaoxin Qi, Xiaojuan Wang, Zhongrui Shang, Dashan Liu, Qi Liu, Ming Department of Electrical and Electronic Engineering the University of Hong Kong Hong Kong Key Lab of Fabrication Technologies for Integrated Circuits and Key Laoratory of Microelectronic Devices and Integrated Technology Institute of Microelectronics the Chinese Academy of Sciences Beijing100029 China The School of Microelectronics Southern University of Science and Technology Shenzhen518055 China ACCESS – AI Chip Center for Emerging Smart Systems InnoHK Centers Hong Kong Science Park Hong Kong University of Chinese Academy of Sciences Beijing100049 China Frontier Institute of Chip and System Fudan University Shanghai200433 China College of Computer Science and Technology Zhejiang University Hangzhou310027 China Institute of Computing Technology Chinese Academy of Sciences Beijing100190 China

The human brain is a complex spiking neural network (SNN), capable of learning multimodal signals in a zero-shot manner by generalizing existing knowledge. Remarkably, it maintains minimal power consumption through event-based signal propagation. However, replicating the human brain in neuromorphic hardware presents both hardware and software challenges. Hardware limitations, such as the slowdown of Moore’s law and Von Neumann bottleneck, hinder the efficiency of digital computers. Additionally, SNNs are characterized by their software training complexities. To this end, we propose a hardware-software co-design on a 40 nm 256 Kb in-memory computing macro that physically integrates a fixed and random liquid state machine (LSM) SNN encoder with trainable artificial neural network (ANN) projections. We showcase the zero-shot LSM-based learning of multimodal events on the N-MNIST and N-TIDIGITS datasets, including visual and audio data association, as well as neural and visual data alignment for brain-machine interfaces. Our co-design achieves classification accuracy comparable to fully optimized software models, resulting in a 152.83 and 393.07-fold reduction in training costs compared to SOTA contrastive language-image pre-training (CLIP) and Prototypical networks, and a 23.34 and 160-fold improvement in energy efficiency compared to cutting-edge digital hardware, respectively. These proof-of-principle prototypes demonstrate zero-shot multimodal events learning capability for emerging efficient and compact neuromorphic hardware. © 2023, CC BY-NC-SA.

关键词： Image enhancement

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The state-of-the-art in Cardiac MRI Reconstruction: Results of the CMRxRecon Challenge in MICCAI 2023

arXiv

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arXiv 2024年

作者： Lyu, Jun Qin, Chen Wang, Shuo Wang, Fanwen Li, Yan Wang, Zi Guo, Kunyuan Ouyang, Cheng Tänzer, Michael Liu, Meng Sun, Longyu Sun, Mengting Li, Qin Shi, Zhang Hua, Sha Li, Hao Chen, Zhensen Zhang, Zhenlin Xin, Bingyu Metaxas, Dimitris N. Yiasemis, George Teuwen, Jonas Zhang, Liping Chen, Weitian Pang, Yanwei Liu, Xiaohan Razumov, Artem Dylov, Dmitry V. Dou, Quan Yan, Kang Xue, Yuyang Du, Yuning Dietlmeier, Julia Garcia-Cabrera, Carles Hemidi, Ziad Al-Haj Vogt, Nora Xu, Ziqiang Zhang, Yajing Chu, Ying-Hua Chen, Weibo Bai, Wenjia Zhuang, Xiahai Qin, Jing Wu, Lianmin Yang, Guang Qu, Xiaobo Wang, He Wang, Chengyan Psychiatry Neuroimaging Laboratory Brigham and Women’s Hospital Harvard Medical School 399 Revolution Drive BostonMA02215 United States Department of Electrical and Electronic Engineering & I-X Imperial College London United Kingdom Digital Medical Research Center School of Basic Medical Sciences Fudan University Shanghai China Department of Bioengineering & I-X Imperial College London LondonW12 7SL United Kingdom Cardiovascular Magnetic Resonance Unit Royal Brompton Hospital Guy’s and St Thomas’ NHS Foundation Trust LondonSW3 6NP United Kingdom Department of Radiology Ruijin Hospital Shanghai Jiao Tong University School of Medicine Shanghai China Department of Electronic Science Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance National Institute for Data Science in Health and Medicine Institute of Artificial Intelligence Xiamen University Xiamen361102 China Department of Computing Department of Brain Sciences Imperial College London LondonSW7 2AZ United Kingdom Human Phenome Institute Fudan University 825 Zhangheng Road Pudong New District Shanghai201203 China Department of Radiology Zhongshan Hospital Fudan University Shanghai China Department of Cardiovascular Medicine Ruijin Hospital Lu Wan Branch Shanghai Jiao Tong University School of Medicine Shanghai China Institute of Science and Technology for Brain-Inspired Intelligence Fudan University Shanghai200433 China Department of Computer Science Rutgers University PiscatawayNJ08854 United States AI for Oncology Netherlands Cancer Institute Plesmanlaan 121 Amsterdam1066 CX Netherlands Department of Imaging and Interventional Radiology The Chinese University of Hong Kong Hong Kong TJK-BIIT Lab School of Electrical and Information Engineering Tianjin University Tianjin300072 China Skolkovo Institute Of Science And Technology Center for Artificial Intelligence Technology 30/1 Bolshoy blvd. Moscow121205 Russia Department of Biomedical Engineering University of Virginia

Cardiac magnetic resonance imaging (MRI) provides detailed and quantitative evaluation of the heart’s structure, function, and tissue characteristics with high-resolution spatial-temporal imaging. However, its slow imaging speed and motion artifacts are notable limitations. Undersampling reconstruction, especially data-driven algorithms, has emerged as a promising solution to accelerate scans and enhance imaging performance using highly under-sampled data. Nevertheless, the scarcity of publicly available cardiac k-space datasets and evaluation platform hinder the development of data-driven reconstruction algorithms. To address this issue, we organized the Cardiac MRI Reconstruction Challenge (CMRxRecon) in 2023, in collaboration with the 26th International Conference on Medical Image computing and Computer-Assisted Intervention (MICCAI). CMRxRecon presented an extensive k-space dataset comprising cine and mapping raw data, accompanied by detailed annotations of cardiac anatomical structures. With overwhelming participation, the challenge attracted more than 285 teams and over 600 participants. Among them, 22 teams successfully submitted Docker containers for the testing phase, with 7 teams submitted for both cine and mapping tasks. All teams use deep learning based approaches, indicating that deep learning has predominately become a promising solution for the problem. The first-place winner of both tasks utilizes the E2E-VarNet architecture as backbones. In contrast, U-Net is still the most popular backbone for both multi-coil and single-coil reconstructions. This paper provides a comprehensive overview of the challenge design, presents a summary of the submitted results, reviews the employed methods, and offers an in-depth discussion that aims to inspire future advancements in cardiac MRI reconstruction models. The summary emphasizes the effective strategies observed in Cardiac MRI reconstruction, including backbone architecture, loss function, pre-processing techn

关键词： Mapping

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PAC Model Checking of Black-Box Continuous-Time Dynamical Systems

arXiv

引用

arXiv 2020年

作者： Xue, Bai Zhang, Miaomiao Easwaran, Arvind Li, Qin State Key Lab. of Computer Science Institute of Software CAS University of Chinese Academy of Sciences Beijing China School of Software Engineering Tongji University China Singapore Shanghai Key Laboratory of Trustworthy Computing East China Normal University Shanghai China

In this paper we present a novel model checking approach to finite-time safety verification of black-box continuous-time dynamical systems within the framework of probably approximately correct (PAC) learning. The black-box dynamical systems are the ones, for which no model is given but whose states changing continuously through time within a finite time interval can be observed at some discrete time instants for a given input. The new model checking approach is termed as PAC model checking due to incorporation of learned models with correctness guarantees expressed using the terms error probability and confidence. Based on the error probability and confidence level, our approach provides statistically formal guarantees that the time-evolving trajectories of the black-box dynamical system over finite time horizons fall within the range of the learned model plus a bounded interval, contributing to insights on the reachability of the black-box system and thus on the satisfiability of its safety requirements. The learned model together with the bounded interval is obtained by scenario optimization, which boils down to a linear programming problem. Three examples demonstrate the performance of our approach. Copyright © 2020, The Authors. All rights reserved.

关键词： Dynamical systems

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DeePMD-kit v3: A Multiple-Backend Framework for Machine Learning Potentials

arXiv

引用

arXiv 2025年

作者： Zeng, Jinzhe Zhang, Duo Peng, Anyang Zhang, Xiangyu He, Sensen Wang, Yan Liu, Xinzijian Bi, Hangrui Li, Yifan Cai, Chun Zhang, Chengqian Du, Yiming Zhu, Jia-Xin Mo, Pinghui Huang, Zhengtao Zeng, Qiyu Shi, Shaochen Qin, Xuejian Yu, Zhaoxi Luo, Chenxing Ding, Ye Liu, Yun-Pei Shi, Ruosong Wang, Zhenyu Bore, Sigbjørn Løland Chang, Junhan Deng, Zhe Ding, Zhaohan Han, Siyuan Jiang, Wanrun Ke, Guolin Liu, Zhaoqing Lu, Denghui Muraoka, Koki Oliaei, Hananeh Singh, Anurag Kumar Que, Haohui Xu, Weihong Xu, Zhangmancang Zhuang, Yong-Bin Dai, Jiayu Giese, Timothy J. Jia, Weile Xu, Ben York, Darrin M. Zhang, Linfeng Wang, Han School of Artificial Intelligence and Data Science Unversity of Science and Technology of China Hefei China AI for Science Institute Beijing100080 China DP Technology Beijing100080 China Academy for Advanced Interdisciplinary Studies Peking University Beijing100871 China State Key Lab of Processors Institute of Computing Technology Chinese Academy of Sciences Beijing100871 China University of Chinese Academy of Sciences Beijing China Baidu Inc. Beijing China Department of Computer Science University of Toronto TorontoON Canada Department of Chemistry Princeton University PrincetonNJ08540 United States University of Chinese Academy of Sciences Beijing100871 China State Key Laboratory of Physical Chemistry of Solid Surfaces iChEM College of Chemistry and Chemical Engineering Xiamen University Xiamen361005 China College of Integrated Circuits Hunan University Changsha410082 China State Key Laboratory of Advanced Technology for Materials Synthesis and Processing Center for Smart Materials and Device Integration School of Material Science and Engineering Wuhan University of Technology Wuhan430070 China College of Science National University of Defense Technology Changsha410073 China Hunan Key Laboratory of Extreme Matter and Applications National University of Defense Technology Changsha410073 China ByteDance Research Beijing100098 China Ningbo Institute of Materials Technology and Engineering Chinese Academy of Sciences Ningbo315201 China College of Materials Science and Opto-Electronic Technology University of Chinese Academy of Sciences Beijing100049 China Key Laboratory of Theoretical and Computational Photochemistry of Ministry of Education College of Chemistry Beijing Normal University Beijing100875 China Department of Geosciences Princeton University PrincetonNJ08544 United States Department of Applied Physics and Applied Mathematics Columbia University New YorkNY10027 United States IKKEM Fujian Xiamen361005 China Graduate

In recent years, machine learning potentials (MLPs) have become indispensable tools in physics, chemistry, and materials science, driving the development of software packages for molecular dynamics (MD) simulations and related applications. These packages, typically built on specific machine learning frameworks such as TensorFlow, PyTorch, or JAX, face integration challenges when advanced applications demand communication across different frameworks. The previous TensorFlow-based implementation of DeePMD-kit exemplified these limitations. In this work, we introduce DeePMD-kit version 3, a significant update featuring a multi-backend framework that supports TensorFlow, PyTorch, JAX, and PaddlePaddle backends, and demonstrate the versatility of this architecture through the integration of other MLPs packages and of Differentiable Molecular Force Field. This architecture allows seamless backend switching with minimal modifications, enabling users and developers to integrate DeePMD-kit with other packages using different machine learning frameworks. This innovation facilitates the development of more complex and interoperable workflows, paving the way for broader applications of MLPs in scientific research. Copyright © 2025, The Authors. All rights reserved.

关键词： Molecular dynamics

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Multi-label Classification with High-rank and High-order label Correlations

arXiv

引用

arXiv 2022年

作者： Si, Chongjie Jia, Yuheng Wang, Ran Zhang, Min-Ling Feng, Yanghe Qu, Chongxiao The Chien-Shiung Wu College Southeast University Nanjing210096 China The MoE Key Lab of Artificial Intelligence AI Institute Shanghai Jiao Tong University Shanghai200240 China The School of Computer Science and Engineering Southeast University Nanjing210096 China Ministry of Education China School of Computing & Information Sciences Caritas Institute of Higher Education Hong Kong The Key Laboratory of Computer Network and Information Integration Southeast University Ministry of Education China The School of Mathematical Science Shenzhen University Shenzhen518060 China Shenzhen Key Laboratory of Advanced Machine Learning and Applications Shenzhen University Shenzhen518060 China The College of Systems Engineering National University of Defense Technology China The 52nd Research Institute of China Electronics Technology Group China

Exploiting label correlations is important to multi-label classification. Previous methods capture the high-order label correlations mainly by transforming the label matrix to a latent label space with low-rank matrix factorization. However, the label matrix is generally a full-rank or approximate full-rank matrix, making the low-rank factorization inappropriate. Besides, in the latent space, the label correlations will become implicit. To this end, we propose a simple yet effective method to depict the high-order label correlations explicitly, and at the same time maintain the high-rank of the label matrix. Moreover, we estimate the label correlations and infer model parameters simultaneously via the local geometric structure of the input to achieve mutual enhancement. Comparative studies over twelve benchmark data sets validate the effectiveness of the proposed algorithm in multi-label classification. The exploited high-order label correlations are consistent with common sense empirically. Our code is publicly available at https://***/Chongjie-Si/HOMI. Copyright © 2022, The Authors. All rights reserved.

关键词： Matrix algebra

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Divideup: A Generic Improvement Approach for Supervised Learning Using dataset Partition with Finer Semantical Information

Divideup: A Generic Improvement Approach for Supervised Lear...

引用

IEEE International Conference on Systems, Man and Cybernetics

作者： Xinyue Zhang Qin Li Shanghai Key Laboratory of Trustworthy Computing East China Normal University Shanghai China National Trusted Embedded Software Engineering Technology Research Center East China Normal University Shanghai China Shanghai Institute of Intelligent Science and Technology Tongji University Shanghai China

ISBN: (数字)9781728185262

ISBN: (纸本)9781728185279

Supervised learning technologies represented by neural networks have made great progress in many fields. In particular applications such as image recognition and natural language processing, the entire computing process is completely handed over to the machine learning algorithm to directly learn the mapping from the feature space to the expected output, without considering much of the semantical information and domain knowledge of the data. In this paper, we propose a generic data refinement approach called divideup, which incorporates finer semantical information into the dataset to obtain a prediction model capturing more detailed information in the training data. By providing the information theory, we have high confidence that the learned model trained with the refined dataset has better prediction accuracy than the original one. We conduct extensive experiments on different datasets with the state-of-the-art neural network architectures such as ResNet and DenseNet. The experimental results show that divideup improves the prediction accuracy of all these deep learning architectures on the original test set. The divideup approach is also applied to other machine learning models such as random forest, XGboost and SVM. The results supports the conclusion that the refined training data obtained by divideup produces better prediction accuracy of the learned model.

关键词： Training Supervised learning Neural networks Training data Predictive models data models Random forests

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Distribution-free data density estimation in large-scale networks

引用

计算机科学前沿 2018年第6期12卷 1220-1240页

作者： Minqi ZHOU Rong ZHANG Weining QIAN Aoying ZHOU Data Science and Engineering Institute East China Normal University Shanghai 200062 China State Key Lab of Software Engineering Wuhan University Wuhan 430072 China Data Science and Engineering Institute East China Normal University Shanghai 200062 China

Estimating the global data distribution in largescale networks is an important issue and yet to be well *** can benefit many applications,especially in the cloud computing era,such as load balancing analysis,query processing,and data *** by the inversion method for random variate (number) generation,in this paper,we present a novel model called distribution-free data density estimation for large ring-based networks to achieve high estimation accuracy with low estimation cost regardless of the distribution models of the underlying *** model generates random samples for any arbitrary distribution by sampling the global cumulative distribution function and is free from sampling *** with this estimation method,we can estimate data densities over both one-dimensional and multidimensional tuple sets,where each dimension could be either continuous or discrete as its *** large-scale networks,the key idea for distribution-free estimation is to sample a small subset of peers for estimating the global data distribution over the data *** on computing and sampling the global cumulative distribution function based on which the global data distribution is estimated are introduced with a detailed theoretical *** extensive performance study confirms the effectiveness and efficiency of our methods in large ring-based networks.

关键词： distribution-free data density estimation random sampling

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Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence

arXiv

引用

arXiv 2025年

作者： Sun, Yingying Jun, A. Liu, Zhiwei Sun, Rui Qian, Liujia Payne, Samuel H. Bittremieux, Wout Ralser, Markus Li, Chen Chen, Yi Dong, Zhen Perez-Riverol, Yasset Khan, Asif Sander, Chris Aebersold, Ruedi Vizcaíno, Juan Antonio Krieger, Jonathan R. Yao, Jianhua Wen, Han Zhang, Linfeng Zhu, Yunping Xuan, Yue Sun, Benjamin Boyang Qiao, Liang Hermjakob, Henning Tang, Haixu Gao, Huanhuan Deng, Yamin Zhong, Qing Chang, Cheng Bandeira, Nuno Li, Ming Weinan, E. Sun, Siqi Yang, Yuedong Omenn, Gilbert S. Zhang, Yue Xu, Ping Fu, Yan Liu, Xiaowen Overall, Christopher M. Wang, Yu Deutsch, Eric W. Chen, Luonan Cox, Jürgen Demichev, Vadim He, Fuchu Huang, Jiaxing Jin, Huilin Liu, Chao Li, Nan Luan, Zhongzhi Song, Jiangning Yu, Kaicheng Wan, Wanggen Wang, Tai Zhang, Kang Zhang, Le Bell, Peter A. Mann, Matthias Zhang, Bing Guo, Tiannan Affiliated Hangzhou First People’s Hospital State Key Laboratory of Medical Proteomics School of Medicine Westlake University Zhejiang Province Hangzhou China Westlake Center for Intelligent Proteomics Westlake Laboratory of Life Sciences and Biomedicine Zhejiang Province Hangzhou China Biology Department Brigham Young University ProvoUT84602 United States Department of Computer Science University of Antwerp Antwerp2020 Belgium Department of Biochemistry CharitéUniversitätsmedizin Berlin Berlin Germany Biomedicine Discovery Institute Department of Biochemistry and Molecular Biology Monash University MelbourneVICVIC 3800 Australia Wellcome Genome Campus Hinxton CambridgeCB10 1SD United Kingdom Harvard Medical School Ludwig Center at Harvard United States Harvard Medical School Broad Institute Ludwig Center at Harvard Dana-Farber Cancer Institute United States Department of Biology Institute of Molecular Systems Biology ETH Zürich Zürich Switzerland Bruker Ltd. MiltonONL9T 6P4 Canada AI for Life Sciences Lab Tencent Shenzhen518057 China State Key Laboratory of Medical Proteomics AI for Science Institute Beijing100080 China Beijing Institute of Lifeomics Beijing102206 China Thermo Fisher Scientific GmbH Hanna-Kunath Str. 11 Bremen28199 Germany Informatics and Predictive Sciences Research Bristol Myers Squibb United States Department of Chemistry Fudan University Songhu Road 2005 Shanghai200438 China Department of Computer Science Luddy School of Informatics Computing and Engineering Indiana University IN47408 United States ProCan® Children’s Medical Research Institute Faculty of Medicine and Health The University of Sydney WestmeadNSW Australia La Jolla CA United States Central China Institute of Artificial Intelligence University of Waterloo Canada AI for Science Institute Center for Machine Learning Research School of Mathematical Sciences Peking University China Research Institute of Intelligent Complex Systems Fudan U

Artificial intelligence (AI) is transforming scientific research, including proteomics. Advances in mass spectrometry (MS)-based proteomics data quality, diversity, and scale, combined with groundbreaking AI techniques, are unlocking new challenges and opportunities in biological discovery. Here, we highlight key areas where AI is driving innovation, from data analysis to new biological insights. These include developing an AI-friendly ecosystem for proteomics data generation, sharing, and analysis;improving peptide and protein identification and quantification;characterizing protein-protein interactions and protein complexes;advancing spatial and perturbation proteomics;integrating multi-omics data;and ultimately enabling AI-empowered virtual cells. © 2025, CC BY.

关键词： Biotic

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