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Automatic Pulmonary Vein and Left Atrium Segmentation for TAPVC Preoperative Evaluation Using V-Net with Grouped Attention

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Automatic Pulmonary Vein and Left Atrium Segmentation for TA...

Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

作者： Jiang Li Huai Chen Fang Zhu Chen Wen Huiwen Chen Lisheng Wang Department of Automation Shanghai Jiao Tong University Institute of Image Processing and Pattern Recognition Shanghai China Department of Cardiothoracic Surgery Shanghai Children’s Medical Center Shanghai Jiaotong University School of Medicine Shanghai China

ISBN: (数字)9781728119908

ISBN: (纸本)9781728119915

Accurate segmentation of pulmonary vein (PV) and left atrium (LA) is essential for the preoperative evaluation and planning of total anomalous pulmonary venous connection (TAPVC), which is a rare but mortal congenital heart disease of children. However, manual segmentation is time-consuming and insipid. To free radiologists from the repetitive work, we propose an automatic deep learning method to segment PV and LA from Low-Dose CT images. In the method, attention mechanism is incorporated into the widely used V-Net and a novel grouped attention module is applied to enforce the segmentation performance of the V-Net. We evaluate our method on 68 3D Low-Dose CT images scanned from patients with TAPVC. The experiment result shows that our method outperforms the popular 3D-UNet and V-Net, with mean dice similarity coefficient (DSC) of 0.795 and 0.834 for the PV and LA *** relevance-We proposed a CNNs-based method for the automatic segmentation of PV and LA with good accuracy, which can be used for the preoperative evaluation and planning of TAPVC. Our method can improve the efficiency and reduce the workloads of radiologists (400 milliseconds vs. 2-3 hours per-case).

关键词： image segmentation Computed tomography Three-dimensional displays Convolution Task analysis Predictive models Solid modeling

AMCF-Net: A Novel Adaptive Multi-Channel Fusion Network for Computer-Aided Diagnosis of Lung Nodules in Chest Computed Tomography

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IET Communications 2025年第1期19卷

作者： Nan Wang Yu Gu Lidong Yang Baohua Zhang Jing Wang Xiaoqi Lu Jianjun Li Dahua Yu Ying Zhao Xin Liu Siyuan Tang Qun He Inner Mongolia Key Laboratory of Pattern Recognition and Intelligent Image Processing School of Digital and Intelligent Industry Inner Mongolia University of Science and Technology Baotou China School of Information and Electronics Beijing Institute of Technology Beijing China College of Information Engineering Inner Mongolia University of Technology Hohhot China School of Computer Science and Technology Baotou Medical College Inner Mongolia University of Science and Technology Baotou China

Malignant lung nodules can significantly affect patients' normal lives and, in severe cases, threaten their survival. Owing to the heterogeneity of computed tomography scans and the varying sizes of nodules, physicians often face challenges in diagnosing this condition. Therefore, a novel adaptive multi-channel fusion network (AMCF-Net) is proposed for computer-aided diagnosis of lung nodules. First, a Multi-Channel Fusion Model module is designed, which divides the channels into two parts in specific proportions, effectively extracting multi-scale channel information while reducing network parameters. After the feature maps output at each layer of the AMCF-Net, a novel adaptive depth-wise separable convolution with a squeeze-and-excitation module is designed to adaptively integrate the feature maps of various stages of the AMCF-Net, ensuring that the key lesions of lung nodules are not lost during classification. Finally, a hybrid loss scheme based on an adaptive mixing ratio is proposed to solve the problem of an imbalanced number of positive and negative nodule samples in the dataset. The model achieved the following test results: an accuracy of 90.22%, a specificity of 98.19%, an F1-score of 86.57%, a sensitivity of 86.49%, and a G-mean of 87.72%. Compared with other advanced networks, AMCF-net delivers high-precision lung nodule classification with minimal inference cost. Related codes have been released at: https://***/GuYuIMUST/AMCF-net .

关键词： computer networks convolution health care image processing neural nets

Unsupervised learning of local discriminative representation for medical images

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arXiv 2020年

作者： Chen, Huai Li, Jieyu Wang, Renzhen Huang, Yijie Meng, Fanrui Meng, Deyu Peng, Qing Wang, Lisheng Institute of Image Processing and Pattern Recognition Department of Automation Shanghai Jiao Tong University Shanghai200240 China Xi'an Jiaotong University Xi'an China Department of Ophthalmology Shanghai Tenth People's Hospital Tongji University Shanghai China

Local discriminative representation is needed in many medical image analysis tasks such as identifying sub-types of lesion or segmenting detailed components of anatomical structures. However, the commonly applied supervised representation learning methods require a large amount of annotated data, and unsupervised discriminative representation learning distinguishes different images by learning a global feature, both of which are not suitable for localized medical image analysis tasks. In order to avoid the limitations of these two methods, we introduce local discrimination into unsupervised representation learning in this work. The model contains two branches: one is an embedding branch which learns an embedding function to disperse dissimilar pixels over a low-dimensional hypersphere;and the other is a clustering branch which learns a clustering function to classify similar pixels into the same cluster. These two branches are trained simultaneously in a mutually beneficial pattern, and the learnt local discriminative representations are able to well measure the similarity of local image regions. These representations can be transferred to enhance various downstream tasks. Meanwhile, they can also be applied to cluster anatomical structures from unlabeled medical images under the guidance of topological priors from simulation or other structures with similar topological characteristics. The effectiveness and usefulness of the proposed method are demonstrated by enhancing various downstream tasks and clustering anatomical structures in retinal images and chest X-ray images. Copyright © 2020, The Authors. All rights reserved.

关键词： Embeddings

Microarray camera image super-resolution with neural network and fusion of V-System 13

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Microarray camera image super-resolution with neural network...

13th International Conference on Computer Science and Education, ICCSE 2018

作者： Zou, Jiancheng Zhang, Honggen North China University of Technology Institute of Image Processing and Pattern Recognition Beijing China

ISBN: (纸本)9781538654958

With the rapid development of artificial intelligence technology, more and more intelligent devices are beginning to be manufactured. At the same time, the demand of the image resolution is getting higher. Super-resolution of the image has become a research hotspot in the field of artificial intelligence. The same time, convolution neural networks have been successful in many fields of computer vision, including image super-resolution. Single image super-resolution has received a lot of attention and made good progress recently. However, there are few neural network models for multi-image super-resolution. Array images are a completely new experience and application for super-resolution. In this paper, we use the microarray camera (3∗3) to get nine pictures in the same scene and use nine images to realize multiple images super-resolution. A super-resolution model combining software with hardware is proposed. The structure of image registration, V- system image fusion and convolution operation are constructed. The super-resolution model can extract the feature of the target image more efficiently, and the array camera has the characteristic of trading space for the time change. The model can be more accurate and efficient than single image super-resolution. In the PSNR and SSIM indexes, 1.01dB and 0.03 are increased respectively. We use ISO12233 camera resolution chart to detect the experimental pictures. In the experimental results, the resolution of the algorithm is the best. © 2018 IEEE.

关键词： Cameras

A correction method for aero-optics thermal radiation effects based on gradient distribution and dark channel

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Optoelectronics Letters 2019年第5期15卷 374-380页

作者： HONG Han-yu SHI Yu ZHANG Tian-xu LIU Zhao Hubei Key Laboratory of Optical Information and Pattern Recognition Hubei Research Centre of Video Image and High Definition Projection School of Electrical and Information Engineering Wuhan Institute of Technology Wuhan 430074 China National Key Laboratory of Science and Technology on Multi-Spectral Information Processing School of Automation Huazhong University of Science and Technology Wuhan 430074 China

In this paper, a new algorithm is proposed to remove the effects of aerodynamic optical thermal radiation from a single infrared image. In this method, the joint probability model of gradient distribution is introduced by studying the "global smoothing and local fluctuation" characteristics of the bias field. A prior L0 norm of dark channel is introduced to constrain the latent clear image. Finally, the split Bregman method is used to solve the optimization problem. The effectiveness of the proposed method is verified by a series of experiments, and the results are compared with the results of the existing methods for the correction of thermal radiation effects.

关键词： aero-optics thermal radiation effects gradient distribution dark channel

Random features for kernel approximation: A survey on algorithms, theory, and beyond

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arXiv 2020年

作者： Liu, Fanghui Huang, Xiaolin Chen, Yudong Suykens, Johan A.K. KU Leuven LeuvenB-3001 Belgium Institute of Image Processing and Pattern Recognition Institute of Medical Robotics Shanghai Jiao Tong University Shanghai200240 China School of Operations Research and Information Engineering Cornell University IthacaNY14850 United States

The class of random features is one of the most popular techniques to speed up kernel methods in large-scale problems. Related works have been recognized by the NeurIPS Test-of-Time award in 2017 and the ICML Best Paper Finalist in 2019. The body of work on random features has grown rapidly, and hence it is desirable to have a comprehensive overview on this topic explaining the connections among various algorithms and theoretical results. In this survey, we systematically review the work on random features from the past ten years. First, the motivations, characteristics and contributions of representative random features based algorithms are summarized according to their sampling schemes, learning procedures, variance reduction properties and how they exploit training data. Second, we review theoretical results that center around the following key question: how many random features are needed to ensure a high approximation quality or no loss in the empirical/expected risks of the learned estimator. Third, we provide a comprehensive evaluation of popular random features based algorithms on several large-scale benchmark datasets and discuss their approximation quality and prediction performance for classification. Last, we discuss the relationship between random features and modern over-parameterized deep neural networks (DNNs), including the use of high dimensional random features in the analysis of DNNs as well as the gaps between current theoretical and empirical results. This survey may serve as a gentle introduction to this topic, and as a users' guide for practitioners interested in applying the representative algorithms and understanding theoretical results under various technical assumptions. We hope that this survey will facilitate discussion on the open problems in this topic, and more importantly, shed light on future research directions. Copyright © 2020, The Authors. All rights reserved.

关键词： Surveys

One-shot distributed algorithm for generalized eigenvalue problem

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arXiv 2020年

作者： Lyu, Kexin He, Fan Huang, Xiaolin Yang, Jie Chen, Liming Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University MOE Key Laboratory of System Control and Information Processing 800 Dongchuan Road Shanghai200240 China Institute of Medical Robotics Shanghai Jiao Tong University 800 Dongchuan Road Shanghai200240 China Ecole Centrale de Lyon France

Nowadays, more and more datasets are stored in a distributed way for the sake of memory storage or data privacy. The generalized eigenvalue problem (GEP) plays a vital role in a large family of high-dimensional statistical models. However, the existing distributed method for eigenvalue decomposition cannot be applied in GEP for the divergence of the empirical covariance matrix. Here we propose a general distributed GEP framework with one-shot communication for GEP. If the symmetric data covariance has repeated eigenvalues, e.g., in canonical component analysis, we further modify the method for better convergence. The theoretical analysis on approximation error is conducted and the relation to the divergence of the data covariance, the eigenvalues of the empirical data covariance, and the number of local servers is analyzed. Numerical experiments also show the effectiveness of the proposed algorithms. Copyright © 2020, The Authors. All rights reserved.

关键词： Eigenvalues and eigenfunctions

Relationship between pulmonary nodule malignancy and surrounding pleurae, airways and vessels: a quantitative study using the public LIDC-IDRI dataset

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arXiv 2021年

作者： Qin, Yulei Gu, Yun Zhang, Hanxiao Yang, Jie Wang, Lihui Wang, Zhexin Yao, Feng Zhu, Yue-Min Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai200240 China Institute of Medical Robotics Shanghai Jiao Tong University Shanghai200240 China CREATIS INSA Lyon CNRS UMR 5220 INSERM U1206 Université de Lyon Villeurbanne69621 France Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province School of Computer Science and Technology Guizhou University Guiyang550025 China Department of Thoracic Surgery Shanghai Chest Hospital Shanghai Jiao Tong University Shanghai200025 China

Objectives: To investigate whether the pleurae, airways and vessels surrounding a nodule on non-contrast computed tomography (CT) can discriminate benign and malignant pulmonary nodules. Materials and Methods: The LIDC-IDRI dataset, one of the largest publicly available CT database, was exploited for study. A total of 1556 nodules from 694 patients were involved in statistical analysis, where nodules with average scorings 3 were respectively denoted as benign and malignant. Besides, 339 nodules from 113 patients with diagnosis ground-truth were independently evaluated. Computer algorithms were developed to segment pulmonary structures and quantify the distances to pleural surface, airways and vessels, as well as the counting number and normalized volume of airways and vessels near a nodule. Odds ratio (OR) and Chi-square (χ2) testing were performed to assess the correlation between features of surrounding structures and nodule malignancy. A non-parametric receiver operating characteristic (ROC) analysis was conducted in logistic regression to evaluate discrimination ability of each structure. Results: For the benign and malignant groups, the average distances from nodules to pleural surface, airways and vessels are respectively (6.56, 5.19), (37.08, 26.43) and (1.42, 1.07) mm. The correlation between nodules and the counting number of airways and vessels that contact or project towards nodules are respectively (OR=22.96, χ2=105.04) and (OR=7.06, χ2=290.11). The correlation between nodules and the volume of airways and vessels are (OR=9.19, χ2=159.02) and (OR=2.29, χ2=55.89). The areas-under-curves (AUCs) for pleurae, airways and vessels are respectively 0.5202, 0.6943 and 0.6529. Conclusion: Our results show that malignant nodules are often surrounded by more pulmonary structures compared with benign ones, suggesting that features of these structures could be viewed as lung cancer biomarkers. © 2021, CC BY.

关键词： Computerized tomography

NiuEM: A Nested-iterative Unsupervised Learning Model for Single-particle Cryo-EM image processing

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NiuEM: A Nested-iterative Unsupervised Learning Model for Si...

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Rui Hu Jiaming Cai Wangjie Zheng Yang Yang Hong-Bin Shen Shanghai Jiao Tong University and Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Shanghai China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University and Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai China Shanghai Jiao Tong University Shanghai China

ISBN: (数字)9781728162157

ISBN: (纸本)9781728162164

Cryo-electron microscopy (cryo-EM) has become a mainstream technology for solving spatial structures of biomacromolecules, while the processing of cryo-EM images is a very challenging task. One of the great challenges is the high noise in the images. A common method is to cluster the images with close projecting angles to get mean images, which are used for 3D reconstruction. However, due to the extremely low signal-to-noise-ratio, common clustering methods often fail to obtain high-quality mean images, leading to poorly reconstructed structures. In this study, we present a new unsupervised learning framework, called NiuEM, to discriminate images captured from different angles and yield cluster-mean images. NiuEM first generates pseudo-labels and then exploits both contrastive loss and cross-entropy loss for training convolutional layers to learn feature representations. Moreover, the pseudo-labels are updated iteratively to enhance the reliability of labels. We assess the performance of NiuEM on four data sets via both visualized and quantitative experiments. Especially, two kinds of metrics are adopted to measure the performance, regarding the clustering quality and the resolution of reconstructed 3D models, respectively. The experimental results show that NiuEM achieves very competitive clustering accuracy in the comparison with the state-of-the-art image clustering methods. Moreover, the cluster mean images yielded by NiuEM lead to better initial 3D models compared with the mainstream reconstruction tools.

关键词： Three-dimensional displays Feature extraction image reconstruction Task analysis Solid modeling Electron microscopy Convolutional neural networks