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arXiv 2024年

作者： Kazerooni, Anahita Fathi Khalili, Nastaran Liu, Xinyang Gandhi, Deep Jiang, Zhifan Anwar, Syed Muhammed Albrecht, Jake Adewole, Maruf Anazodo, Udunna Anderson, Hannah Baid, Ujjwal Bergquist, Timothy Borja, Austin J. Calabrese, Evan Chung, Verena Conte, Gian-Marco Dako, Farouk Eddy, James Ezhov, Ivan Familiar, Ariana Farahani, Keyvan Franson, Andrea Gottipati, Anurag Haldar, Shuvanjan Iglesias, Juan Eugenio Janas, Anastasia Johansen, Elaine Jones, Blaise V. Khalili, Neda Kofler, Florian LaBella, Dominic Lai, Hollie Anne Van Leemput, Koen Li, Hongwei Bran Maleki, Nazanin McAllister, Aaron S. Meier, Zeke Menze, Bjoern Moawad, Ahmed W. Nandolia, Khanak K. Pavaine, Julija Piraud, Marie Poussaint, Tina Prabhu, Sanjay P. Reitman, Zachary Rudie, Jeffrey D. Sanchez-Montano, Mariana Shaikh, Ibraheem Salman Sheth, Nakul Tu, Wenxin Wang, Chunhao Ware, Jeffrey B. Wiestler, Benedikt Zapaishchykova, Anna Bornhorst, Miriam Deutsch, Michelle Fouladi, Maryam Lazow, Margot Mikael, Leonie Hummel, Trent Kann, Benjamin de Blank, Peter Hoffman, Lindsey Aboian, Mariam Nabavizadeh, Ali Packer, Roger Bakas, Spyridon Resnick, Adam Rood, Brian Vossough, Arastoo Linguraru, Marius George Children’s Hospital of Philadelphia PhiladelphiaPA United States Department of Neurosurgery University of Pennsylvania PhiladelphiaPA United States University of Pennsylvania PhiladelphiaPA United States Sheikh Zayed Institute for Pediatric Surgical Innovation Children’s National Hospital WashingtonDC United States Sage Bionetworks United States Lab Crestview Radiology Lagos Nigeria McGill University MontrealQC Canada Department of Radiology Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Division of Computational Pathology Department of Pathology and Laboratory Medicine Indiana University School of Medicine IndianapolisIN United States Department of Neurosurgery The University of Southern California CA United States Department of Radiology Duke University Medical Center DurhamNC United States Mayo Clinic MN United States Center for Global Health Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Informatics Technical University Munich Germany TranslaTUM - Central Institute for Translational Cancer Research Technical University of Munich Germany Cancer Imaging Program National Cancer Institute National Institutes of Health BethesdaMD United States C. S. Mott Children’s Hospital University of Michigan MI United States Biomedical Engineering Rutgers University New BrunswickNJ United States Athinoula A Martinos Center for Biomedical Imaging Massachusetts General Hospital BostonMA United States Yale University New HavenCT United States PrecisionFDA U.S. Food and Drug Administration Silver SpringMD United States Cincinnati Children’s Hospital Medical Center OH United States Helmholtz AI Helmholtz Munich Germany Department of Radiation Oncology Duke University Medical Center DurhamNC United States Department of Radiology Children’s Health Orange County CA United States Department of Applied Mathematics and Computer Science Technical University of De

Pediatric tumors of the central nervous system are the most common cause of cancer-related death in children. The five-year survival rate for high-grade gliomas in children is less than 20%. Due to their rarity, the diagnosis of these entities is often delayed, their treatment is mainly based on historic treatment concepts, and clinical trials require multi-institutional collaborations. Here we present the CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs challenge, focused on pediatric brain tumors with data acquired across multiple international consortia dedicated to pediatric neuro-oncology and clinical trials. The CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs challenge brings together clinicians and AI/imaging scientists to lead to faster development of automated segmentation techniques that could benefit clinical trials, and ultimately the care of children with brain tumors. © 2024, CC BY.

关键词： Deep learning

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Cone-shaped inwall capillary based microcavity aimed for temperature and refractive index sensing

Cone-shaped inwall capillary based microcavity aimed for tem...

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Optical Fiber Sensors, OFS 2018

作者： Zhang, Xiaobei Yang, Lei Bai, Huawen Huang, Yi Xiao, Hai Huang, Sujuan Wang, Tingyun Key laboratory of Specialty Fiber Optics and Optical Access Networks Joint International Research Laboratory of Specialty Fiber Optics and Advanced Communication Shanghai Institute for Advanced Communication and Data Science Shanghai University China Department of Electrical and Computer Engineering Clemson University ClemsonSC United States

A cone-shaped capillary based microcavity aimed for the temperature and refractive index sensing are proposed, modeled and demonstrated, while the femtosecond laser micromachining method successfully enhances the Q fa... 详细信息

ISBN: (纸本)9781943580507

关键词： Microcavities

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Implementing on the field programmable gate array of combined finite state machine with counter 9

Implementing on the field programmable gate array of combine...

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9th IEEE International Conference on Dependable Systems, Services and Technologies, DESSERT 2018

作者： Barkalov, A. Titarenko, L. Zeleneva, I. Hrushko, S. Departement of Computer Science Electrotechnics and Informatics University of Zielona GóraLicealna 9 Zielona Góra Poland Institute of Metrology Electrotechnics and Informatics University of Zielona Góra Licealna 9 Zielona Góra Poland Department of Computer Systems and Networks Zaporizhzhya National Technical University Zhukovskogo str. 64 Zaporozhye Ukraine

ISBN: (纸本)9781538659038

A method for heterogeneous implementing the circuit of combined finite state machine on the field programmable gate array is proposed and oriented especially to the high-reliable ProASICs. The method is based on constructing the set of linear chains of states and replacement of the state register by counter. Encoding of classes of pseudoequivalent states is used for diminishing the number of memory excitation function arguments. An example of combined finite state machine synthesis using the initial graph-scheme of algorithm is considered. © 2018 IEEE.

关键词： Field programmable gate arrays (FPGA)

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Unsupervised Keyword Extraction Method Based on Chinese Patent Clustering

Unsupervised Keyword Extraction Method Based on Chinese Pate...

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IEEE International Conference on Big Knowledge (ICBK)

作者： Yuxin Xie Xuegang Hu Yuhong Zhang Shi Li Key Laboratory of Knowledge Engineering with Big Data (Hefei University of Technology) Ministry of Education School of Computer Science and Information Engineering Hefei University of Technology Hefei China Intelligent Connected Vehicle Research Institute (JAC Technical Center) Anhui Jianghuai Automobile Group Corp.Ltd Hefei China

Recently, patent data analysis has attracted a lot of attention, and patent keyword extraction is a hot problem. Most existing methods for patent keyword extraction are based on the frequency of words without semantic information. In this paper, we propose an Unsupervised Keyword Extraction Method (UKEM) based on Chinese patent clustering. More specifically, we use a Skip-gram model to train word embeddings based on a Chinese patent corpus. Then each patent is represented as a vector called patent vector. These patent vectors are clustered to obtain several cluster centroids. Next, the distance between each word vector in patent abstract and cluster centroid is computed to indicate the semantic importance of this word. The experimental results on several Chinese patent datasets show that the performance of our proposed method is better than several competitive methods.

关键词： Patents Semantics data mining Knowledge engineering Neural networks Big data computer science

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arXiv

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arXiv 2019年

作者： Liao, Hao Liu, Ming-Kai Mariani, Manuel Sebastian Zhou, Mingyang Wu, Xingtong National Engineering Laboratory for Big Data System Computing Technology Guangdong Province Key Laboratory of Popular High Performance Computers College of Computer Science and Software Engineering Shenzhen University Shenzhen518060 China Institute of Fundamental and Frontier Sciences University of Electronic Science and Technology of China Chengdu610051 China URPP Social Networks Universität Zürich CH-8050 Switzerland

When investigating the spreading of a piece of information or the diffusion of an innovation, we often lack information on the underlying propagation network. Reconstructing the hidden propagation paths based on the observed diffusion process is a challenging problem which has recently attracted attention from diverse research fields. To address this reconstruction problem, based on static similarity metrics commonly used in the link prediction literature, we introduce new node-node temporal similarity metrics. The new metrics take as input the time-series of multiple independent spreading processes, based on the hypothesis that two nodes are more likely to be connected if they were often infected at similar points in time. This hypothesis is implemented by introducing a time-lag function which penalizes distant infection times. We find that the choice of this time-lag strongly affects the metrics' reconstruction accuracy, depending on the network's clustering coefficient and we provide an extensive comparative analysis of static and temporal similarity metrics for network reconstruction. Our findings shed new light on the notion of similarity between pairs of nodes in complex networks. Copyright © 2019, The Authors. All rights reserved.

关键词： Information services

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A Wide Residual Network for Sentiment Classification 18

A Wide Residual Network for Sentiment Classification

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2nd International Conference on Deep Learning Technologies, ICDLT 2018

作者： Wen, Yang Xu, An Liu, Wei Chen, Leiting Key Laboratory of Digital Media Technology of Sichuan Province Chengdu China School of Computer Science and Engineering University of Electronic Science and Technology of China Chengdu China Dongguan Data Science Software Technology Co. Ltd Dongguan China Chengdu Vocational and Technical College of Industry Chengdu China Institute of Electronic and Information Engineering UESTC in Guangdong Dongguan China

ISBN: (纸本)9781450364737

Recurrent neural network (RNN) is a popular deep learning model for sentiment classification. Most RNN models benefit from the power of the depth of the deep learning network. However, training a sufficiently deep RNN using one word-embedding vector has a problem of feature reuse. In addition, deeper neural networks are more difficult to train. To overcome these problems, in this paper, we describe a sentiment classification model that combines a wide word embedding network architecture and a residual RNN. Firstly, more than one word-embedding vectors are pre-trained to obtain a larger feature space;Secondly, extend the RNN to be a deeper architecture, then employ a residual learning to ease the deep training of networks. Finally, experimental evaluations are conducted on two benchmarks, the results of the proposed networks demonstrate a good applicability for the sentiment classification problem. © 2018 ACM.

关键词： Recurrent neural networks

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Time Series Forecasting of New Cases and New Deaths Rate for COVID-19 using Deep Learning Methods

arXiv

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arXiv 2021年

作者： Ayoobi, Nooshin Sharifrazi, Danial Alizadehsani, Roohallah Shoeibi, Afshin Gorriz, Juan M. Moosaei, Hossein Khosravi, Abbas Nahavandi, Saeid Chofreh, Abdoulmohammad Gholamzadeh Goni, Feybi Ariani Klemeš, Jiří Jaromír Mosavi, Amir Department of Mathematics Savitribai Phule Pune University Pune411007 India Department of Computer Engineering School of Technical and Engineering Shiraz Branch Islamic Azad University Shiraz Iran Institute for Intelligent Systems Research and Innovation Deakin University GeelongVIC3216 Australia Computer Engineering Department Ferdowsi University of Mashhad Mashhad Iran Faculty of Electrical and Computer Engineering Biomedical Data Acquisition Lab K. N. Toosi University of Technology Tehran Iran Department of Signal Theory Networking and Communications Universidad de Granada Spain Department of Mathematics Faculty of Science University of Bojnord Iran Sustainable Process Integration Laboratory - SPIL NETME Centre Faculty of Mechanical Engineering Brno University of Technology - VUT Brno Technická 2896/2 Brno616 69 Czech Republic Department of Management Faculty of Business and Management Brno University of Technology VUT Brno Kolejní 2906/4 Brno612 00 Czech Republic Faculty of Civil Engineering Technische Universität Dresden Dresden01069 Germany John von Neumann Faculty of Informatics Obuda University Budapest1034 Hungary School of Economics and Business Norwegian University of Life Sciences 1430 Norway

The first known case of Coronavirus disease 2019 (COVID-19) was identified in December 2019. It has spread worldwide, leading to an ongoing pandemic, imposed restrictions and costs to many countries. Predicting the number of new cases and deaths during this period can be a useful step in predicting the costs and facilities required in the future. The purpose of this study is to predict new cases and deaths rate one, three and seven-day ahead during the next 100 days. The motivation for predicting every n days (instead of just every day) is the investigation of the possibility of computational cost reduction and still achieving reasonable performance. Such a scenario may be encountered real-time forecasting of time series. Six different deep learning methods are examined on the data adopted from the WHO website. Three methods are LSTM, Convolutional LSTM, and GRU. The bidirectional extension is then considered for each method to forecast the rate of new cases and new deaths in Australia and Iran countries. This study is novel as it carries out a comprehensive evaluation of the aforementioned three deep learning methods and their bidirectional extensions to perform prediction on COVID-19 new cases and new death rate time series. To the best of our knowledge, this is the first time that Bi-GRU and Bi-Conv-LSTM models are used for prediction on COVID-19 new cases and new deaths time series. The evaluation of the methods is presented in the form of graphs and Friedman statistical test. The results show that the bidirectional models have lower errors than other models. Several error evaluation metrics are presented to compare all models, and finally, the superiority of bidirectional methods is determined. This research could be useful for organizations working against COVID-19 and determining their long-term plans. Copyright © 2021, The Authors. All rights reserved.

关键词： Coronavirus

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The evolutionary history of 2,658 cancers (vol 578, pg 122, 2020)

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NATURE 2023年第7948期614卷 E42-E42页

作者： Gerstung, Moritz Jolly, Clemency Leshchiner, Ignaty Dentro, Stefan C. Gonzalez, Santiago Rosebrock, Daniel Mitchell, Thomas J. Rubanova, Yulia Anur, Pavana Yu, Kaixian Tarabichi, Maxime Deshwar, Amit Wintersinger, Jeff Kleinheinz, Kortine Vazquez-Garcia, Ignacio Haase, Kerstin Jerman, Lara Sengupta, Subhajit Macintyre, Geoff Malikic, Salem Donmez, Nilgun Livitz, Dimitri G. Cmero, Marek Demeulemeester, Jonas Schumacher, Steven Fan, Yu Yao, Xiaotong Lee, Juhee Schlesner, Matthias Boutros, Paul C. Bowtell, David D. Zhu, Hongtu Getz, Gad Imielinski, Marcin Beroukhim, Rameen Sahinalp, S. Cenk Ji, Yuan Peifer, Martin Markowetz, Florian Mustonen, Ville Yuan, Ke Wang, Wenyi Morris, Quaid D. Spellman, Paul T. Wedge, David C. Van Loo, Peter European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Wellcome Sanger Institute Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany University of Ljubljana Ljubljana Slovenia The Francis Crick Institute London UK Big Data Institute University of Oxford Oxford UK Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Big Data Institute Li Ka Shing Centre University of Oxford Oxford UK University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Department of Applied Mathematics and Theoretical Physics Centre for Mathematical Sciences University of Cambridge Cambridge UK Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA Department of Statistics Columbia University New York NY USA Department of Haematology University of Cambridge Cambridge UK University of Leuven Leuven Belgium Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Charlestown MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Dana-Farber Cancer Institute Boston MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Oxford NIHR Biomedical Research Centre Oxford UK Oxford NIHR Biomedical Research Centre University of Oxford Oxford UK University of Toronto Toronto Ontario Canada Vector Institute Toronto Ontario Canada Vector Institute Toronto ON Canada Department of Computer Science University of Toronto Toronto ON Canada Ontario Institute for Cancer Research Toronto Ontario Canada University of California Los Angeles

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VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images

arXiv

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arXiv 2020年

作者： Sekuboyina, Anjany Kumar Husseini, Malek E. Bayat, Amirhossein Löffler, Maximilian Liebl, Hans Li, Hongwei Tetteh, Giles Kukačka, Jan Payer, Christian Štern, Darko Urschler, Martin Chen, Maodong Cheng, Dalong Lessmann, Nikolas Hu, Yujin Wang, Tianfu Yang, Dong Xu, Daguang Ambellan, Felix Amiranashvili, Tamaz Ehlke, Moritz Lamecker, Hans Lehnert, Sebastian Lirio, Marilia de Olaguer, Nicolás Pérez Ramm, Heiko Sahu, Manish Tack, Alexander Zachow, Stefan Jiang, Tao Ma, Xinjun Angerman, Christoph Wang, Xin Brown, Kevin Kirszenberg, Alexandre Puybareau, Élodie Chen, Di Bai, Yiwei Rapazzo, Brandon H. Yeah, Timyoas Zhang, Amber Xu, Shangliang Hou, Feng He, Zhiqiang Zeng, Chan Xiangshang, Zheng Liming, Xu Netherton, Tucker J. Mumme, Raymond P. Court, Laurence E. Huang, Zixun He, Chenhang Wang, Li-Wen Ling, Sai Ho Huynh, Lê Duy Boutry, Nicolas Jakubicek, Roman Chmelik, Jiri Mulay, Supriti Sivaprakasam, Mohanasankar Paetzold, Johannes C. Shit, Suprosanna Ezhov, Ivan Wiestler, Benedikt Glocker, Ben Valentinitsch, Alexander Rempfler, Markus Menze, Björn H. Kirschke, Jan S. Department of Informatics Technical University of Munich Germany Munich School of BioEngineering Technical University of Munich Germany Department of Neuroradiology Klinikum Rechts der Isar Germany Department for Quantitative Biomedicine University of Zurich Switzerland Friedrich Miescher Institute for Biomedical Engineering Switzerland Institute of Biological and Medical Imaging Helmholtz Zentrum München Germany Department of Computing Imperial College London United Kingdom Institute of Computer Graphics and Vision Graz University of Technology Austria Gottfried Schatz Research Center: Biophysics Medical University of Graz Austria School of Computer Science The University of Auckland New Zealand Computer Vision Group iFLYTEK Research South China China Department of Radiology and Nuclear Medicine Radboud University Medical Center Nijmegen Netherlands Shenzhen Research Institute of Big Data China School of Biomedical Engineering Health Science Center Shenzhen University China NVIDIA Corporation United States Zuse Institute Berlin Germany 1000shapes GmbH Berlin Germany Damo Academy Alibaba Group China Department of Mathematics University of Innsbruck Austria Department of Electronic Engineering Fudan University China New York University United States France Deep Reasoning AI Inc United States Technical University of Munich Germany East China Normal University China Chinese Academy of Sciences China Lenovo Group China Ping An Technologies China College of Computer Science and Technology Zhejiang University China Real Doctor AI Research Centre Zhejiang University China The University of Texas MD Anderson Cancer Center United States Department of Electronic and Information Engineering The Hong Kong Polytechnic University China Department of Computing The Hong Kong Polytechnic University China The School of Biomedical Engineering University of Technology Sydney Australia Department of Biomedical Engineering Brno University of Technology Czech Republic India

Vertebral labelling and segmentation are two fundamental tasks in an automated spine processing pipeline. Reliable and accurate processing of spine images is expected to benefit clinical decision support systems for diagnosis, surgery planning, and population-based analysis of spine and bone health. However, designing automated algorithms for spine processing is challenging predominantly due to considerable variations in anatomy and acquisition protocols and due to a severe shortage of publicly available data. Addressing these limitations, the Large Scale Vertebrae Segmentation Challenge (VerSe) was organised in conjunction with the International Conference on Medical Image Computing and computer Assisted Intervention (MICCAI) in 2019 and 2020, with a call for algorithms tackling the labelling and segmentation of vertebrae. Two datasets containing a total of 374 multi-detector CT scans from 355 patients were prepared and 4505 vertebrae have individually been annotated at voxel level by a human-machine hybrid algorithm (https://***/nqjyw/, https://***/t98fz/). A total of 25 algorithms were benchmarked on these datasets. In this work, we present the results of this evaluation and further investigate the performance variation at the vertebra level, scan level, and different fields of view. We also evaluate the generalisability of the approaches to an implicit domain shift in data by evaluating the top-performing algorithms of one challenge iteration on data from the other iteration. The principal takeaway from VerSe: the performance of an algorithm in labelling and segmenting a spine scan hinges on its ability to correctly identify vertebrae in cases of rare anatomical variations. The VerSe content and code can be accessed at: https://***/anjany/verse. © 2020, CC BY-NC-ND.

关键词： computerized tomography

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The repertoire of mutational signatures in human cancer (vol 578, pg 94, 2020)

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NATURE 2023年第7948期614卷 E41-E41页

作者： Alexandrov, Ludmil B. Kim, Jaegil Haradhvala, Nicholas J. Huang, Mi Ni Ng, Alvin Wei Tian Wu, Yang Boot, Arnoud Covington, Kyle R. Gordenin, Dmitry A. Bergstrom, Erik N. Islam, S. M. Ashiqul Lopez-Bigas, Nuria Klimczak, Leszek J. McPherson, John R. Morganella, Sandro Sabarinathan, Radhakrishnan Wheeler, David A. Mustonen, Ville Getz, Gad Rozen, Steven G. Stratton, Michael R. Department of Cellular and Molecular Medicine Department of Bioengineering Moores Cancer Center University of California San Diego CA USA Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Department of Cellular and Molecular Medicine and Department of Bioengineering University of California San Diego La Jolla CA USA UC San Diego Moores Cancer Center San Diego CA USA University of California San Diego San Diego CA USA Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Massachusetts General Hospital Boston MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama Japan Computational Biology Program Ontario Institute for Cancer Research Toronto ON Canada Programme in Cancer & Stem Cell Biology Duke-NUS Medical School Singapore Singapore Centre for Computational Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Centre for Computational Biology Duke-NUS Medical School Singapore Singapore SingHealth Duke-NUS Institute of Precision Medicine National Heart Centre Singapore Singapore Singapore Cancer Science Institute of Singapore National University of Singapore Singapore Singapore Institute of Molecular and Cell Biology Singapore Singapore Laboratory of Cancer Epigenome Division of Medical Science National Cancer Centre Singapore Singapore Singapore Duke-NUS Medical School Singapore Singapore Human Genome Sequencing Center Baylor College of Medicine Houston TX USA Dan L. Duncan Cancer Center Baylor College of Medicine Houston TX USA Department of Molecular and Human Genetics Baylor College of Medicine Houston TX USA Genome Integrity and Structural Biology Laboratory National Ins

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