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Reproducibility and Geometric Intrinsic Dimensionality: An Investigation on Graph Neural Network Research

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arXiv 2024年

作者： Hille, Tobias Stubbemann, Maximilian Hanika, Tom Knowledge & Data Engineering Group University of Kassel Kassel Germany Interdisciplinary Research Center for Information System Design University of Kassel Kassel Germany Information Systems and Machine Learning Lab University of Hildesheim Hildesheim Germany Institute of Computer Science University of Hildesheim Hildesheim Germany

Difficulties in replication and reproducibility of empirical evidences in machine learning research have become a prominent topic in recent years. Ensuring that machine learning research results are sound and reliable requires reproducibility, which verifies the reliability of research findings using the same code and data. This promotes open and accessible research, robust experimental workflows, and the rapid integration of new findings. Evaluating the degree to which research publications support these different aspects of reproducibility is one goal of the present work. For this we introduce an ontology of reproducibility in machine learning and apply it to methods for graph neural networks. Building on these efforts we turn towards another critical challenge in machine learning, namely the curse of dimensionality, which poses challenges in data collection, representation, and analysis, making it harder to find representative data and impeding the training and inference processes. Using the closely linked concept of geometric intrinsic dimension we investigate to which extend the used machine learning models are influenced by the intrinsic dimension of the data sets they are trained *** Codes 68T01 68T07 68T09 51F99 Copyright © 2024, The Authors. All rights reserved.

关键词： Graph neural networks

Size-Invariance Matters: Rethinking Metrics and Losses for Imbalanced Multi-object Salient Object Detection 41

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Size-Invariance Matters: Rethinking Metrics and Losses for I...

41st International Conference on Machine Learning, ICML 2024

作者： Li, Feiran Xu, Qianqian Bao, Shilong Yang, Zhiyong Cong, Runmin Cao, Xiaochun Huang, Qingming Institute of Information Engineering Chinese Academy of Sciences Beijing China School of Cyber Security University of Chinese Academy of Sciences Beijing China Key Laboratory of Intelligent Information Processing Institute of Computing Technology Chinese Academy of Sciences Beijing China School of Computer Science and Technology University of Chinese Academy of Sciences Beijing China Institute of Information Science Beijing Jiaotong University Beijing China School of Control Science and Engineering Shandong University Jinan China Key Laboratory of Machine Intelligence and System Control Ministry of Education Jinan China School of Cyber Science and Tech. Sun Yat-sen University Shenzhen Campus China Key Laboratory of Big Data Mining and Knowledge Management Chinese Academy of Sciences Beijing China

This paper explores the size-invariance of evaluation metrics in Salient Object Detection (SOD), especially when multiple targets of diverse sizes co-exist in the same image. We observe that current metrics are size-sensitive, where larger objects are focused, and smaller ones tend to be ignored. We argue that the evaluation should be size-invariant because bias based on size is unjustified without additional semantic information. In pursuit of this, we propose a generic approach that evaluates each salient object separately and then combines the results, effectively alleviating the imbalance. We further develop an optimization framework tailored to this goal, achieving considerable improvements in detecting objects of different sizes. Theoretically, we provide evidence supporting the validity of our new metrics and present the generalization analysis of SOD. Extensive experiments demonstrate the effectiveness of our method. The code is available at https://***/Ferry-Li/SI-SOD. Copyright 2024 by the author(s)

关键词： Object detection

Deformable 3D/3D CT-to-digital-tomosynthesis image registration in image-guided bronchoscopy interventions

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Computers in Biology and Medicine 2024年 171卷 108199-108199页

作者： Saad, Fatima Frysch, Robert Saalfeld, Sylvia Kellnberger, Stephan Schulz, Jessica Fahrig, Rebecca Bhadra, Krish Nürnberger, Andreas Rose, Georg Institute for Medical Engineering Otto-von-Guericke University Magdeburg Germany Forschungscampus STIMULATE Otto-von-Guericke University Magdeburg Germany Department of Simulation and Graphics Otto-von-Guericke University Magdeburg Germany Siemens Healthcare GmbH Forchheim Germany CHI Memorial Rees Skillern Cancer Institute Chattanooga United States Data and Knowledge Engineering Group Faculty of Computer Science Otto-von-Guericke University Magdeburg Germany

Traditional navigational bronchoscopy procedures rely on preprocedural computed tomography (CT) and intraoperative chest radiography and cone-beam CT (CBCT) to biopsy peripheral lung lesions. This navigational approach is challenging due to the projective nature of radiography, and the high radiation dose, long imaging time, and large footprints of CBCT. Digital tomosynthesis (DTS) is considered an attractive alternative combining the advantages of radiography and CBCT. Only the depth resolution cannot match a full CBCT image due to the limited angle acquisition. To address this issue, preoperative CT is a good auxiliary in guiding bronchoscopy interventions. Nevertheless, CT-to-body divergence caused by anatomic changes and respiratory motion, hinders the effective use of CT imaging. To mitigate CT-to-body divergence, we propose a novel deformable 3D/3D CT-to-DTS registration algorithm employing a multistage, multiresolution approach and using affine and elastic B-spline transformation models with bone and lung mask images. A multiresolution strategy with a Gaussian image pyramid and a multigrid strategy within the B-spline model are applied. The normalized correlation coefficient is included in the cost function for the affine model and a multimetric weighted cost function is used for the B-spline model, with weights determined heuristically. Tested on simulated and real patient bronchoscopy data, the algorithm yields promising results. Assessed qualitatively by visual inspection and quantitatively by computing the Dice coefficient (DC) and the average symmetric surface distance (ASSD), the algorithm achieves mean DC of 0.82±0.05 and 0.74±0.05, and mean ASSD of 0.65±0.29mm and 0.93±0.43mm for simulated and real data, respectively. This algorithm lays the groundwork for CT-aided intraoperative DTS imaging in image-guided bronchoscopy interventions with future studies focusing on automated metric weight setting. © 2024

关键词： Image registration

Joint-Motion Mutual Learning for Pose Estimation in Videos

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arXiv 2024年

作者： Wu, Sifan Chen, Haipeng Yin, Yifang Hu, Sihao Feng, Runyang Jiao, Yingying Yang, Ziqi Liu, Zhenguang College of Computer Science and Technology Jilin University Changchun China A*STAR Singapore Georgia Institute of Technology Atlanta United States School of Artificial Intelligence Jilin University Changchun China The State Key Laboratory of Blockchain and Data Security Zhejiang University Hangzhou China Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin University Changchun China Institute of Blockchain and Data Security Hangzhou China

Human pose estimation in videos has long been a compelling yet challenging task within the realm of computer vision. Nevertheless, this task remains difficult because of the complex video scenes, such as video defocus and self-occlusion. Recent methods strive to integrate multi-frame visual features generated by a backbone network for pose estimation. However, they often ignore the useful joint information encoded in the initial heatmap, which is a byproduct of the backbone generation. Comparatively, methods that attempt to refine the initial heatmap fail to consider any spatiotemporal motion features. As a result, the performance of existing methods for pose estimation falls short due to the lack of ability to leverage both local joint (heatmap) information and global motion (feature) dynamics. To address this problem, we propose a novel joint-motion mutual learning framework for pose estimation, which effectively concentrates on both local joint dependency and global pixel-level motion dynamics. Specifically, we introduce a context-aware joint learner that adaptively leverages initial heatmaps and motion flow to retrieve robust local joint feature. Given that local joint feature and global motion flow are complementary, we further propose a progressive joint-motion mutual learning that synergistically exchanges information and interactively learns between joint feature and motion flow to improve the capability of the model. More importantly, to capture more diverse joint and motion cues, we theoretically analyze and propose an information orthogonality objective to avoid learning redundant information from multi-cues. Empirical experiments show our method outperforms prior arts on three challenging benchmarks. Copyright © 2024, The Authors. All rights reserved.

关键词： Motion estimation

Quantifying societal emotional resilience to natural disasters from geo-located social media content

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arXiv 2022年

作者： Bathina, Krishna C. ten Thij, Marijn Bollen, Johan School of Informatics Computing and Engineering Indiana University United States Delft Institute of Applied Mathematics Delft University of Technology Netherlands Department of Data Science and Knowledge Engineering Maastricht University Netherlands

Natural disasters can have devastating and long-lasting effects on a community’s emotional well-being. These effects may be distributed unequally, affecting some communities more profoundly and possibly over longer time periods than others. Here, we analyze the effects of four major US hurricanes, namely, Irma, Harvey, Florence, and Dorian on the emotional well-being of the affected communities and regions. We show that a community’s emotional response to a hurricane event can be measured from the content of social media that its population posted before, during, and after the hurricane. For each hurricane making landfall in the US, we observe a significant decrease in sentiment in the affected areas before and during the hurricane followed by a rapid return to pre-hurricane baseline, often within 1-2 weeks. However, some communities exhibit markedly different rates of decline and return to previous equilibrium levels. This points towards the possibility of measuring the emotional resilience of communities from the dynamics of their online emotional response. © 2022, CC BY.

关键词： Hurricanes

Spatial Relationship between Atrial Fibrillation Drivers and the Presence of Repetitive Conduction Patterns Using Recurrence Analysis on In-Silico Models

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Spatial Relationship between Atrial Fibrillation Drivers and...

2021 Computing in Cardiology, CinC 2021

作者： Marques, Victor G Gharaviri, Ali Pezzuto, Simone Bonizzi, Pietro Zeemering, Stef Schotten, Ulrich Maastricht University Physiology Department Maastricht Netherlands Università della Svizzera Italiana Center for Computational Medicine in Cardiology Euler Institute Lugano Switzerland Maastricht University Department of Data Science and Knowledge Engineering Maastricht Netherlands

ISBN: (纸本)9781665479165

Catheter ablation treatment for atrial fibrillation (AF) is still suboptimal, possibly due to the difficulty to identify AF drivers. Recurrence analysis can be used to detect and eventually locate repetitive patterns that tend to be generated by AF drivers. In this study, we aimed to understand the spatial relationship between repetitiveness in recurrence analysis and rotor positions in an in-silico AF model. AF was simulated in a detailed three-dimensional model of the atria considering different degrees of endomysial fibrosis (0% and 70%). Rotors driving AF were tracked based on phase singularities obtained from transmembrane potentials. Activation-phase signals calculated from electrograms (4×4 electrode grid, 3 mm spacing) were used for recurrence analysis. Intervals with and without long-lasting sources inside the electrode coverage area were determined;the recurrence in both groups of intervals was quantified and compared with each other by calculating the recurrence rate (RR) per AF cycle length. RRs were lower during intervals with sources for both 0% and 70% fibrosis groups (0.56 [0.36;0.85] vs. 0.90 [0.80;0.97], p © 2021 Creative Commons.

关键词： Diseases

Towards Ordinal data Science

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arXiv 2023年

作者： Stumme, Gerd Dürrschnabel, Dominik Hanika, Tom Knowledge & Data Engineering Group Research Center for Information System Design Department of Electrical Engineering and Computer Science University of Kassel Germany Institute of Computer Science University of Hildesheim Germany Berlin School of Library and Information Science Humboldt-Universität zu Berlin Germany

Order is one of the main instruments to measure data. In this paper, we will therefore discuss difthe relationship between objects in (empirical) data. ferent means for measuring and ‘calculating’ with However, compared to methods that use numerical ordinal structures — a specific class of directed properties of objects, the amount of ordinal meth- graphs — and show how to infer knowledge from ods developed is rather small. One reason for this is them. Our aim is to establish Ordinal data Science the limited availability of computational resources as a fundamentally new research agenda. Besides in the last century that would have been required cross-fertilization with other cornerstone machine for ordinal computations. Another reason — partic- learning and knowledge representation methods, a ularly important for this line of research — is that broad range of disciplines will benefit from this en-order-based methods are often seen as too mathe- deavor, including, psychology, sociology, economics, matically rigorous for applying them to real-world web science, knowledge engineering, *** Codes 03G10, 06A15, 68T27, 68T30 Copyright © 2023, The Authors. All rights reserved.

关键词： data Science

Research on Visualization Algorithm of Association Rules Based on Concept Lattice

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Research on Visualization Algorithm of Association Rules Bas...

2020 International Conference on Cyberspace Innovation of Advanced Technologies, CIAT 2020

作者： Shen, Xiajiong Bao, Lijie Zhang, Lei Institute of Data and Knowledge Engineering Henan University Kaifeng China Henan Key Laboratory of Big Data Analysis and Processing Henan University Kaifeng China

ISBN: (纸本)9781450387828

The traditional association rule representation method has no way to show the essential relationship between concepts and lacks understanding of the concept level. Concept lattice is a kind of data structure which can show the relationship between concepts, concept lattice also has unique advantages in the visualization and discovery of potential knowledge of association rules. In this paper, a visualization algorithm of association rules based on concept lattice is proposed. The algorithm visually displays the association rules extracted from concept lattice. Finally, this article combines the chronic disease record data of a certain hospital to analyze and visualize the association rules. The implementation results show that the visualization method has good effects in knowledge analysis and data display. © 2020 ACM.

关键词： Visualization

Research on Penetration Strategy of UAV

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Research on Penetration Strategy of UAV

2020 International Conference on Cyberspace Innovation of Advanced Technologies, CIAT 2020

作者： Han, Daojun Xiang, Hongzhen Chen, Haolin Xie, Yi Institute of Data and Knowledge Engineering Henan University Kaifeng China Henan Key Laboratory of Big Data Analysis and Processing Henan University Kaifeng China

ISBN: (纸本)9781450387828

Taking a military operation as an example, this paper makes an in-depth study of what tactics a single UAV should adopt when facing the interception of multiple enemy UAV groups. According to the analysis of the impact diagram, the aerial range of the UAV standoff defines a threat area, that is, when the UAV arrives at the threat area, it needs to adopt a strategy for penetration, or it will be intercepted. The strategy adopted by UAV in the threat area is analyzed, and the decision control method is made. © 2020 ACM.

关键词： Unmanned aerial vehicles (UAV)