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arXiv 2020年

作者： Chatterjee, Soumick Saad, Fatima Sarasaen, Chompunuch Ghosh, Suhita Krug, Valerie Khatun, Rupali Mishra, Rahul Desai, Nirja Radeva, Petia Rose, Georg Stober, Sebastian Speck, Oliver Nürnberger, Andreas Data and Knowledge Engineering Group Otto von Guericke University Magdeburg Germany Faculty of Computer Science Otto von Guericke University Magdeburg Germany Genomics Research Centre Human Technopole Italy Institute for Medical Engineering Otto von Guericke University Magdeburg Germany Research Campus STIMULATE Otto von Guericke University Magdeburg Germany Biomedical Magnetic Resonance Otto von Guericke University Magdeburg Germany Artificial Intelligence Lab Otto von Guericke University Magdeburg Germany Department of Mathematics and Computer Science University of Barcelona Barcelona Spain Translational Radiobiology Department of Radiation Oncology Universitätsklinikum Erlangen Erlangen Germany Apollo Hospitals Bilaspur India HCG Cancer Centre Vadodara India Computer Vision Centre Cerdanyola Barcelona Spain Centre for Behavioural Brain Sciences Magdeburg Germany German Centre for Neurodegenerative Diseases Magdeburg Germany

The outbreak of COVID-19 has shocked the entire world with its fairly rapid spread and has challenged different sectors. One of the most effective ways to limit its spread is the early and accurate diagnosing infected patients. Medical imaging, such as X-ray and Computed Tomography (CT), combined with the potential of Artificial Intelligence (AI), plays an essential role in supporting medical personnel in the diagnosis process. Thus, in this article five different deep learning models (ResNet18, ResNet34, InceptionV3, InceptionResNetV2 and DenseNet161) and their ensemble, using majority voting have been used to classify COVID-19, pneumoniæ and healthy subjects using chest X-ray images. Multilabel classification was performed to predict multiple pathologies for each patient, if present. Firstly, the interpretability of each of the networks was thoroughly studied using local interpretability methods - occlusion, saliency, input X gradient, guided backpropagation, integrated gradients, and DeepLIFT, and using a global technique - neuron activation profiles. The mean Micro-F1 score of the models for COVID-19 classifications ranges from 0.66 to 0.875, and is 0.89 for the ensemble of the network models. The qualitative results showed that the ResNets were the most interpretable models. This research demonstrates the importance of using interpretability methods to compare different models before making a decision regarding the best performing model. Copyright © 2020, The Authors. All rights reserved.

关键词： COVID-19

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Preface

Communications in Computer and Information Science

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Communications in Computer and Information Science 2017年 705卷 V-VIII页

作者： Cazenave, Tristan Winands, Mark H. M. Edelkamp, Stefan Schiffel, Stephan Thielscher, Michael Togelius, Julian LAMSADE Universitè Paris-Dauphine Paris Cedex 16 France Department of Data Science and Knowledge Engineering Maastricht University Maastricht Limburg Netherlands Institute for Artificial Intelligence Universität Bremen TAB Bremen Bremen Germany Reykjavik University Reykjavik Iceland The University of New South Wales SydneyNSW Australia Department of Computer Science and Engineering New York University BrooklynNY United States

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26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 Antwerp, Belgium. 15-20 July 2017 Abstracts

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BMC NEUROSCIENCE 2017年第Sup1期18卷 95-176页

作者： [Anonymous] Department of Neuroscience Yale University New Haven CT 06520 USA Department Physiology & Pharmacology SUNY Downstate Brooklyn NY 11203 USA NYU School of Engineering 6 MetroTech Center Brooklyn NY 11201 USA Kings County Hospital Center Brooklyn NY 11203 USA Departament de Matemàtica Aplicada Universitat Politècnica de Catalunya Barcelona 08028 Spain Institut de Neurobiologie de la Méditerrannée (INMED) INSERM UMR901 Aix-Marseille Univ Marseille France Center of Neural Science New York University New York NY USA Aix-Marseille Univ INSERM INS Inst Neurosci Syst Marseille France Laboratoire de Physique Théorique et Modélisation CNRS UMR 8089 Université de Cergy-Pontoise 95300 Cergy-Pontoise Cedex France Department of Mathematics and Computer Science ENSAT Abdelmalek Essaadi’s University Tangier Morocco Laboratory of Natural Computation Department of Information and Electrical Engineering and Applied Mathematics University of Salerno 84084 Fisciano SA Italy Department of Medicine University of Salerno 84083 Lancusi SA Italy Dipartimento di Fisica Università degli Studi Aldo Moro Bari and INFN Sezione Di Bari Italy Data Analysis Department Ghent University Ghent Belgium Coma Science Group University of Liège Liège Belgium Cruces Hospital and Ikerbasque Research Center Bilbao Spain BIOtech Department of Industrial Engineering University of Trento and IRCS-PAT FBK 38010 Trento Italy Department of Data Analysis Ghent University Ghent 9000 Belgium The Wellcome Trust Centre for Neuroimaging University College London London WC1N 3BG UK Department of Electronic Engineering NED University of Engineering and Technology Karachi Pakistan Blue Brain Project École Polytechnique Fédérale de Lausanne Lausanne Switzerland Departement of Mathematics Swansea University Swansea Wales UK Laboratory for Topology and Neuroscience at the Brain Mind Institute École polytechnique fédérale de Lausanne Lausanne Switzerland Institute of Mathematics

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Deep learning for detection and segmentation of artefact and disease instances in gastrointestinal endoscopy

arXiv

引用

arXiv 2020年

作者： Ali, Sharib Dmitrieva, Mariia Ghatwary, Noha Bano, Sophia Polat, Gorkem Temizel, Alptekin Krenzer, Adrian Hekalo, Amar Guo, Yun Bo Matuszewski, Bogdan Gridach, Mourad Voiculescu, Irina Yoganand, Vishnusai Chavan, Arnav Raj, Aryan Nguyen, Nhan T. Tran, Dat Q. Huynh, Le Duy Boutry, Nicolas Rezvy, Shahadate Chen, Haijian Choi, Yoon Ho Subramanian, Anand Balasubramanian, Velmurugan Gao, Xiaohong W. Hu, Hongyu Liao, Yusheng Stoyanov, Danail Daul, Christian Realdon, Stefano Cannizzaro, Renato Lamarque, Dominique Tran-Nguyen, Terry Bailey, Adam Braden, Barbara East, James Rittscher, Jens Institute of Biomedical Engineering and Big Data Institute Old Road Campus University of Oxford Oxford United Kingdom Translational Gastroenterology Unit Experimental Medicine Div. John Radcliffe Hospital University of Oxford Oxford United Kingdom Oxford NIHR Biomedical Research Centre Oxford United Kingdom Université de Versailles St-Quentin en Yvelines Hôpital Ambroise Paré France Instituto Onclologico Veneto IOV-IRCCS Padova Italy CRO Centro Riferimento Oncologico IRCCS Aviano Italy Computer Engineering Department Arab Academy for Science and Technology Alexandria Egypt Department of Computer Science University College London London United Kingdom CRAN UMR 7039 University of Lorraine CNRS Nancy France Graduate School of Informatics Middle East Technical University Ankara Turkey Department of Artificial Intelligence and Knowledge Systems University of Würzburg Germany School of Engineering University of Central Lancashire United Kingdom Department of Computer Science University of Oxford United Kingdom Mimyk Medical Simulations Pvt Ltd Indian Institute of Science Bengaluru India Dhanbad India Hanoi Viet Nam Le Kremlin-BicêtreF-94270 France School of Science and Technology Middlesex University London United Kingdom Department of Computer Science School of Informatics Xiamen University China Sungkyunkwan University Seoul Korea Republic of Claritrics India Pvt Ltd Chennai India School of Medical Science and Technology Indian Institute of Technology KharagpurWest Bengal India Shanghai Jiaotong University Shanghai China Ibn Zohr University Computer Science HIT Agadir Morocco

The Endoscopy Computer Vision Challenge (EndoCV) is a crowd-sourcing initiative to address eminent problems in developing reliable computer aided detection and diagnosis endoscopy systems and suggest a pathway for clinical translation of technologies. Whilst endoscopy is a widely used diagnostic and treatment tool for hollow-organs, there are several core challenges often faced by endoscopists, mainly: 1) presence of multi-class artefacts that hinder their visual interpretation, and 2) difficulty in identifying subtle precancerous precursors and cancer abnormalities. Artefacts often affect the robustness of deep learning methods applied to the gastrointestinal tract organs as they can be confused with tissue of interest. EndoCV2020 challenges are designed to address research questions in these remits. In this paper, we present a summary of methods developed by the top 17 teams and provide an objective comparison of state-of-the-art methods and methods designed by the participants for two sub-challenges: i) artefact detection and segmentation (EAD2020), and ii) disease detection and segmentation (EDD2020). Multi-center, multi-organ, multi-class, and multi-modal clinical endoscopy datasets were compiled for both EAD2020 and EDD2020 sub-challenges. The out-of-sample generalization ability of detection algorithms was also evaluated. Whilst most teams focused on accuracy improvements, only a few methods hold credibility for clinical usability. The best performing teams provided solutions to tackle class imbalance, and variabilities in size, origin, modality and occurrences by exploring data augmentation, data fusion, and optimal class thresholding techniques. © 2020, CC BY-NC-SA.

关键词： Endoscopy

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Linked data Crowdsourcing Quality Assessment based on Domain Professionalism

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Journal of Physics: Conference Series 2019年第5期1187卷

作者： Lu Yang Li Huang Zhenzhen Liu School of Computer Science and Technology Wuhan University of Science and Technology Wuhan 430065 China Key Laboratory of Intelligent Information Processing and Real-time Industrial System in Hubei Province Wuhan 430065 China Institute of Big Data Science and Engineering Wuhan University of Science and Technology Wuhan 430065 China Key Laboratory of Rich-media Knowledge Organization and Service of Digital Publishing Content National Press and Publication Administration Beijing 100038 China

With the rapid development of Internet technology, crowdsourcing, as a flexible, effective and low-cost problem-solving method, has begun to receive more and more attention. The use of crowdsourcing to evaluate the quality of linked data has also become a research hotspot. This paper proposes the concept of Domain Specialization Test (DST), which uses domain professional testing tasks DSTs to evaluate the professionalism of workers, and combines the idea of Mini-batch Gradient Descent (MBGD) to improve the EM algorithm, and the MBEM algorithm is proposed to achieve efficient and accurate evaluation of task results. The experimental results show that the proposed method can screen out the appropriate workers for the linked data crowdsourcing task and improve the accuracy and iteration efficiency of the results.

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SMILE-UHURA Challenge - Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiograms

arXiv

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arXiv 2024年

作者： Chatterjee, Soumick Mattern, Hendrik Dörner, Marc Sciarra, Alessandro Dubost, Florian Schnurre, Hannes Khatun, Rupali Yu, Chun-Chih Hsieh, Tsung-Lin Tsai, Yi-Shan Fang, Yi-Zeng Yang, Yung-Ching Huang, Juinn-Dar Xu, Marshall Liu, Siyu Ribeiro, Fernanda L. Bollmann, Saskia Chintalapati, Karthikesh Varma Radhakrishna, Chethan Mysuru Ram Kumar, Sri Chandana Hudukula Sutrave, Raviteja Qayyum, Abdul Mazher, Moona Razzak, Imran Rodero, Cristobal Niederer, Steven Lin, Fengming Xia, Yan Wang, Jiacheng Qiu, Riyu Wang, Liansheng Panah, Arya Yazdan Jurdi, Rosana El Fu, Guanghui Arslan, Janan Vaillant, Ghislain Valabregue, Romain Dormont, Didier Stankoff, Bruno Colliot, Olivier Vargas, Luisa Chacón, Isai Daniel Pitsiorlas, Ioannis Arbeláez, Pablo Zuluaga, Maria A. Schreiber, Stefanie Speck, Oliver Nürnberger, Andreas Faculty of Computer Science Otto von Guericke University Magdeburg Magdeburg Germany Data and Knowledge Engineering Group Otto von Guericke University Magdeburg Magdeburg Germany Genomics Research Centre Human Technopole Milan Italy Biomedical Magnetic Resonance Otto von Guericke University Magdeburg Magdeburg Germany Department of Neurology Medical Faculty University Hospital of Magdeburg Magdeburg Germany German Centre for Neurodegenerative Diseases Magdeburg Germany Centre for Behavioural Brain Sciences Magdeburg Germany University Hospital Zurich University of Zurich Zurich Switzerland Google Inc. United States Translational Radiobiology Department of Radiation Oncology Universitätsklinikum Erlangen Friedrich-Alexnder-Universität Erlangen-Nürnberg Erlangen Germany National Yang Ming Chiao Tung University Hsinchu Taiwan School of Electrical Engineering and Computer Science University of Queensland Brisbane Australia Australian eHealth Research Centre Chile National Heart and Lung Institute Faculty of Medicine Imperial College London London United Kingdom Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom School of Computer Science and Engineering University of New South Wales Sydney Australia Mohamed bin Zayed University of Artificial Intelligence Abu Dhabi United Arab Emirates The Alan Turing Institute London United Kingdom School of Computing University of Leeds Leeds United Kingdom Department of Computer Science School of Informatics Xiamen University Xiamen China Manteia Technologies Co. Ltd Xiamen China Leicester International Institute Dalian University of Technology Dalian China Sorbonne Université Institut du Cerveau - Paris Brain Institute ICM CNRS Inria Inserm AP-HP Hôpital de la Pitié Salpêtrière ParisF-75013 France Centre of Formation and Research in Artificial Intelligence Universidad de Los Andes Colombia Data Science Department EURECOM Sophia Antipolis Franc

The human brain receives nutrients and oxygen through an intricate network of blood vessels. Pathology affecting small vessels, at the mesoscopic scale, represents a critical vulnerability within the cerebral blood supply and can lead to severe conditions, such as Cerebral Small Vessel Diseases. The advent of 7 Tesla MRI systems has enabled the acquisition of higher spatial resolution images, making it possible to visualise such vessels in the brain. However, the lack of publicly available annotated datasets has impeded the development of robust, machine learning-driven segmentation algorithms. To address the complexities of mesoscopic vessel segmentation and to highlight the need for advanced techniques to manage the high noise levels and poor vessel-to-background contrast inherent in"ultra-high-resolution" data, the SMILE-UHURA challenge was organised. This challenge, held in conjunction with the ISBI 2023, in Cartagena de Indias, Colombia, aimed to provide a platform for researchers working on related topics. The SMILE-UHURA challenge addresses the gap in publicly available annotated datasets by providing an annotated dataset of Time-of-Flight angiography acquired with 7T MRI. This dataset was created through a combination of automated pre-segmentation and extensive manual refinement. In this manuscript, sixteen submitted methods and two baseline methods are compared both quantitatively and qualitatively on two different datasets: held-out test MRAs from the same dataset as the training data (with labels kept secret) and a separate 7T ToF MRA dataset where both input volumes and labels are kept secret. The results demonstrate that most of the submitted deep learning methods, trained on the provided training dataset, achieved reliable segmentation performance. Dice scores reached up to 0.838 ± 0.066 and 0.716 ± 0.125 on the respective datasets, with an average performance of up to 0.804 ± 0.15. Copyright © 2024, The Authors. All rights reserved.

关键词： Deep learning

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Emergency Event Matching using Hierarchical Blocking Method

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Journal of Physics: Conference Series 2019年第5期1187卷

作者： Chang Wen Yu Liu College of Computer Science and Technology Wuhan University of Science and Technology Wuhan 430065 China Key Laboratory of Intelligent Information Processing and Real-time Industrial System in Hubei Province Wuhan 430065 China Institute of Big Data Science and Engineering Wuhan University of Science and Technology Wuhan 430065 China Key Laboratory of Rich-media Knowledge Organization and Service of Digital Publishing Content National Press and Publication Administration Beijing 100038 China

With the extensive application of the knowledge base (KB), how to complete it is a hot topic on Semantic Web. However, many problems go with the big data, and the event matching is one of these problems, which is finding out the entities referring to the same things in the real world and also the key point in the extending process. To enrich the emergency knowledge base (E-SKB) we constructed before, we need to filter out the news from several web pages and find the same news to avoid data redundancy. In this paper, we proposed a hierarchy blocking method to reduce the times of comparisons and narrow down the scope by extracting the news properties as the blocking keys. The method transforms the event matching problem into a clustering problem. Experimental results show that the proposed method is superior to the existing text clustering algorithm with high precision and less comparison times.

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Author Correction:data augmentation in microscopic images for material data mining

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npj Computational Materials 2020年第1期6卷 476-476页

作者： Boyuan Ma Xiaoyan Wei Chuni Liu Xiaojuan Ban Haiyou Huang Hao Wang Weihua Xue Stephen Wu Mingfei Gao Qing Shen Michele Mukeshimana Adnan Omer Abuassba Haokai Shen Yanjing Su Beijing Advanced Innovation Center for Materials Genome Engineering University of Science and Technology Beijing Beijing China School of Computer and Communication Engineering University of Science and Technology Beijing Beijing China Beijing Key Laboratory of Knowledge Engineering for Materials Science Beijing China Institute for Advanced Materials and Technology University of Science and Technology Beijing Beijing China School of Materials Science and Engineering University of Science and Technology Beijing Beijing China School of Materials Science and Technology Liaoning Technical University Liaoning China The Institute of Statistical Mathematics Research Organization of Information and Systems Tachikawa Tokyo Japan National Intellectual Property Administration Beijing China Faculty of Engineering Sciences University of Burundi Bujumbura Burundi Faculty of Engineering and Technology Palestine Technical University – Kadoorie Tulkarem Palestine College of Information Science and Engineering China University of Petroleum Beijing China Key Lab of Petroleum Data Mining China University of Petroleum Beijing China

The original version of this article omitted the following from the Acknowledgements:“This work was supported by Beijing Top Discipline for Artificial Intelligent Science and engineering,University of Science and Tec... 详细信息

关键词： HTML knowledge mining

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Preface

引用

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2001年 2037卷 V-VI页

作者： Boers, Egbert J. W. Cagnoni, Stefano Gottlieb, Jens Hart, Emma Lanzi, Pier Luca Raidl, Günther R. Smith, Robert E. Tijink, Harald Leiden Institute of Advanced Computer Science Leiden University Niels Bohrweg 1 Leiden Netherlands Dept. of Computer Engineering University of Parma Parco Area delle Scienze 181/a Parma Italy SAP AG Neurottstrasse 16 Walldorf Germany Napier University School of Computing 219 Colinton Road Edinburgh United Kingdom Polytechnic of Milan Piazza Leonardo da Vinci 32 Milan Italy Algorithms and Data Structur es Group Institute of Computer Graphics Vienna University of Technology Favoritenstrasse 9-11/186 Vienna Austria The Intelligent Computer Systems Centre The University of The West of England Coldharbour Lane Frenchay Bristol United Kingdom Data and Knowledge Systems Department National Aerospace Laboratory NLR P.O. Box 153 Emmeloord Netherlands

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NaCdSb: An Orthorhombic Zintl Phase with Exceptional Intrinsic Thermoelectric Performance

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Angewandte Chemie 2022年第3期135卷

作者： Kai Guo Yuting Zhang Song Yuan Qinghang Tang Chen Lin Pengfei Luo Jiong Yang Shusheng Pan Li-Dong Zhao Guofeng Cheng Jiye Zhang Jun Luo School of Physics and Materials Science Guangzhou University Guangzhou 510006 China Research Center for Advanced Information Materials (CAIM) Huangpu Research & Graduate School of Guangzhou University Sino-Singapore Guangzhou Knowledge City Huangpu District Guangzhou 510555 China Contribution: Conceptualization (lead) Formal analysis (equal) Writing - original draft (lead) School of Materials Science and Engineering Shanghai University 99 Shangda Road Shanghai 200444 China Contribution: Data curation (equal) Investigation (equal) Validation (lead) Contribution: Data curation (lead) Formal analysis (equal) Materials Genome Institute Shanghai University 99 Shangda Road Shanghai 200444 China Key Laboratory of Artificial Micro- and Nano-Structures of Ministry of Education and School of Physics and Technology Wuhan University Wuhan 430072 China Contribution: Investigation (equal) Contribution: Investigation (equal) Methodology (supporting) Contribution: Investigation (equal) Writing - review & editing (supporting) School of Materials Science and Engineering Beihang University Beijing 100191 China Contribution: Methodology (equal) Writing - review & editing (equal) Analysis & Testing Center for Inorganic Materials Shanghai Institute of Ceramics Chinese Academy of Sciences Shanghai 200050 China Contribution: Formal analysis (equal) Investigation (supporting) Contribution: Data curation (equal) Writing - review & editing (supporting) Contribution: Supervision (lead) Writing - review & editing (equal)

Many Zintl phases are promising thermoelectric materials owning to their features like narrow band gaps, multiband behaviors, ideal charge transport tunnels, and loosely bound cations. Herein we show a new Zintl phase NaCdSb with exceptional intrinsic thermoelectric performance. Pristine NaCdSb exhibits semiconductor behaviors with an experimental hole concentration of 2.9×10 18 cm −3 and a calculated band gap of 0.5 eV. As the temperature increases, the hole concentration rises gradually and approaches its optimal one, leading to a high power factor of 11.56 μW cm −1 K −2 at 673 K. The ultralow thermal conductivity is derived from the small phonon group velocity and short phonon lifetime, ascribed to the structural anharmonicity of Cd−Sb bonds. As a consequence, a maximum zT of 1.3 at 673 K has been achieved without any doping optimization or structural modification, demonstrating that NaCdSb is a remarkable thermoelectric compound with great potential for performance improvement.

关键词： Electron-Crystal NaCdSb Phonon-Glass Thermoelectric Properties Zintl Phase

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