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Multi-level graph convolutional network with automatic graph learning for hyperspectral image classification

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arXiv 2020年

作者： Wan, Sheng Gong, Chen Pan, Shirui Yang, Jie Yang, Jian PCA Lab Key Laboratory of Intelligent Perception and Systems for High-Dimensional Information of Ministry of Education Jiangsu Key Laboratory of Image Video Understanding for Social Security School of Computer Science and Engineering Nanjing University of Science and Technology Nanjing210094 China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai200240 China Faculty of Information Technology Monash University ClaytonVIC3800 Australia

Nowadays, deep learning methods, especially the Graph Convolutional Network (GCN), have shown impressive performance in hyperspectral image (HSI) classification. However, the current GCN-based methods treat graph construction and image classification as two separate tasks, which often results in suboptimal performance. Another defect of these methods is that they mainly focus on modeling the local pairwise importance between graph nodes while lack the capability to capture the global contextual information of HSI. In this paper, we propose a Multi-level GCN with Automatic Graph Learning method (MGCN-AGL) for HSI classification, which can automatically learn the graph information at both local and global levels. By employing attention mechanism to characterize the importance among spatially neighboring regions, the most relevant information can be adaptively incorporated to make decisions, which helps encode the spatial context to form the graph information at local level. Moreover, we utilize multiple pathways for local-level graph convolution, in order to leverage the merits from the diverse spatial context of HSI and to enhance the expressive power of the generated representations. To reconstruct the global contextual relations, our MGCN-AGL encodes the long range dependencies among image regions based on the expressive representations that have been produced at local level. Then inference can be performed along the reconstructed graph edges connecting faraway regions. Finally, the multi-level information is adaptively fused to generate the network output. In this means, the graph learning and image classification can be integrated into a unified framework and benefit each other. Extensive experiments have been conducted on three real-world hyperspectral datasets, which are shown to outperform the state-of-the-art methods. Copyright © 2020, The Authors. All rights reserved.

关键词： image classification

Dysfunction and recovery of the cortical connectome gradient and its association with gene expression profiles in methamphetamine and heroin use disorders

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Progress in Neuro-Psychopharmacology and Biological Psychiatry 2025年 139卷 111391页

作者： Du, Zhe Yang, Wenhan Wen, Xinwen Cai, Suping Liu, Jun Yuan, Kai School of Life Science and Technology Xidian University Shaanxi Xi'an 710126 China Department of Radiology Second Xiangya Hospital Central South University Changsha 410011 China Inner Mongolia Key Laboratory of Pattern Recognition and Intelligent Image Processing School of Information Engineering Inner Mongolia University of Science and Technology Inner Mongolia Baotou 014010 China Engineering Research Center of Molecular and Neuro Imaging Ministry of Education Shaanxi Xi'an China Ganzhou City Key Laboratory of Mental Health The Third People's Hospital of Ganzhou City Jiangxi Ganzhou 341000 China Xi'an Key Laboratory of Intelligent Sensing and Regulation of Trans-Scale Life Information School of Life Science and Technology Xidian University Shaanxi Xi'an 710126 China

Background: The hierarchy and segregation of community-based brain networks can be characterized by functional connectome gradient (FCG). Whether the cortical FCG was disrupted and could even be reversed after prolonged abstinence in substance use disorders (SUDs) remained unclear. Less is known about the underlying genetic basis. Methods: We utilized three independent datasets (n = 247) to investigate cortical FCG dysfunction and recovery after prolonged abstinence in methamphetamine use disorder (MUD) (n = 131), and validated in heroin use disorder (HUD) (n = 36). Furthermore, magnetic resonance spectroscopy (MRS) was employed to test the relationship between the glutamate in the ventral tegmental area (VTA) and cortical FCG. Postmortem gene expression was utilized to assess the transcriptional profiles related to cortical FCG alterations. Support vector regression (SVR) model based on the baseline cortical FCG was built to predict craving changes after long-term abstinence. Results: MUD and HUD individuals exhibited similar cortical FCG dysfunction and recovery at global and network levels, mainly in dorsal and ventral attentions network (DAN and VAN), frontoparietal network (FPN) and default mode network (DMN). The glutamate levels in VTA were correlated with the gradient distance between FPN and limbic network (LIM). The transcriptional profiles explained variance of the altered gradient pattern, with the most related genes enriched in synaptic signaling. Baseline cortical FCG significantly predicted craving changes after long-term abstinence. Conclusions: We provided novel insights into the understanding of SUD as treatable health conditions from cortical FCG changes, which could be considered as the potential biomarkers of craving changes after prolonged abstinence for SUDs. © 2025 Elsevier Inc.

关键词： Cortical functional connectome gradient Gene expression Glutamate Heroin use disorder Methamphetamine use disorder Support vector regression

The effect of data augmentation on classification of atrial fibrillation in short single-lead ecg signals using deep neural networks

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arXiv 2020年

作者： Hatamian, Faezeh Nejati Ravikumar, Nishant Vesal, Sulaiman Kemeth, Felix P. Struck, Matthias Maier, Andreas Department of Image Processing and Medical Technology Fraunhofer Institute for Integrated Circuits IIS Erlangen Germany Pattern Recognition Lab Department of Computer Science Friedrich-Alexander University Erlangen-Nrnberg Erlangen Germany School of Computing LICAMM Leeds Institute of Cardiovascular and Metabolic Medicine School of Medicine University of Leeds United Kingdom

Cardiovascular diseases are the most common cause of mortality worldwide. Detection of atrial fibrillation (AF) in the asymptomatic stage can help prevent strokes. It also improves clinical decision making through the delivery of suitable treatment such as, anticoagulant therapy, in a timely manner. The clinical significance of such early detection of AF in electrocardiogram (ECG) signals has inspired numerous studies in recent years, of which many aim to solve this task by leveraging machine learning algorithms. ECG datasets containing AF samples, however, usually suffer from severe class imbalance, which if unaccounted for, affects the performance of classification algorithms. Data augmentation is a popular solution to tackle this problem. In this study, we investigate the impact of various data augmentation algorithms, e.g., oversampling, Gaussian Mixture Models (GMMs) and Generative Adversarial Networks (GANs), on solving the class imbalance problem. These algorithms are quantitatively and qualitatively evaluated, compared and discussed in detail. The results show that deep learning-based AF signal classification methods benefit more from data augmentation using GANs and GMMs, than oversampling. Furthermore, the GAN results in circa 3% better AF classification accuracy in average while performing comparably to the GMM in terms of f1-score. Copyright © 2020, The Authors. All rights reserved.

关键词： Diseases

A novel enhancement method for low illumination images based on microarray camera

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Applied Mathematics(A Journal of Chinese Universities) 2017年第3期32卷 313-322页

作者： ZOU Jian-cheng ZHENG Wen-qi YANG Zhi-hui Institute of Image Processing and Pattern Recognition North China University of Technology Beijing 100144 China.

It is difficult but important to get clear information from the low illumination images. In recent years the research of the low illumination image enhancement has become a hot topic in image processing and computer vision. The Retinex algorithm is one of the most popular methods in the field and uniform illumination is necessary to enhance low illumination image quality by using this algorithm. However, for the different areas of an image with contrast brightness differences, the illumination image is not smooth and causes halo artifacts so that it cannot retain the detail information of the original images. To solve the problem, we generalize the multi-scale Retinex algorithm and propose a new enhancement method for the low illumination images based on the microarray camera. The proposed method can well make up for the deficiency of imbalanced illumination and significantly inhibit the halo artifacts as well. Experimental results show that the proposed method can get better image enhancement effect compared to the multi-scale Retinex algorithm of a single image enhancement. Advantages of the method also include that it can significantly inhibit the halo artifacts and thus retain the details of the original images, it can improve the brightness and contrast of the image as well. The newly developed method in this paper has application potential to the images captured by pad and cell phone in the low illumination environment.

关键词： low illumination microarray camera multi-scale Retinex image sharpening

Dynamically Mitigating Data Discrepancy with Balanced Focal Loss for Replay Attack Detection

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arXiv 2020年

作者： Dou, Yongqiang Yang, Haocheng Yang, Maolin Xu, Yanyan Ke, Dengfeng School of Information Science and Technology Beijing Forestry University Beijing100083 China National Laboratory of Pattern Recognition Institute of Automation Chinese Academy of Sciences Beijing100190 China Engineering Research Center for Forestry-oriented Intelligent Information Processing National Forestry and Grassland Administration China

It becomes urgent to design effective anti-spoofing algorithms for vulnerable automatic speaker verification systems due to the advancement of high-quality playback devices. Current studies mainly treat anti-spoofing as a binary classification problem between bonafide and spoofed utterances, while lack of indistinguishable samples makes it difficult to train a robust spoofing detector. In this paper, we argue that for anti-spoofing, it needs more attention for indistinguishable samples over easily-classified ones in the modeling process, to make correct discrimination a top priority. Therefore, to mitigate the data discrepancy between training and inference, we propose D3M, to leverage a balanced focal loss function as the training objective to dynamically scale the loss based on the traits of the sample itself. Besides, in the experiments, we select three kinds of features that contain both magnitude-based and phase-based information to form complementary and informative features. Experimental results on the ASVspoof2019 dataset demonstrate the superiority of the proposed methods by comparison between our systems and top-performing ones. Systems trained with the balanced focal loss perform significantly better than conventional cross-entropy loss. With complementary features, our fusion system with only three kinds of features outperforms other systems containing five or more complex single models by 22.5% for min-tDCF and 7% for EER, achieving a min-tDCF and an EER of 0.0124 and 0.55% respectively. Furthermore, we present and discuss the evaluation results on real replay data apart from the simulated ASVspoof2019 data, indicating that research for anti-spoofing still has a long way to go. Source code, analysis data, and other details are publicly available at https://***/asvspoof/D3M. © 2020, CC BY.

关键词： Speech recognition

Mem Brain: An Easy-to-Use Online Webserver for Transmembrane Protein Structure Prediction

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Nano-Micro Letters 2018年第1期10卷 12-19页

作者： Xi Yin Jing Yang Feng Xiao Yang Yang Hong-Bin Shen Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Department of Computer Science Shanghai Jiao Tong University Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering

Membrane proteins are an important kind of proteins embedded in the membranes of cells and play crucial roles in living organisms, such as ion channels,transporters, receptors. Because it is difficult to determinate the membrane protein's structure by wet-lab experiments,accurate and fast amino acid sequence-based computational methods are highly desired. In this paper, we report an online prediction tool called Mem Brain, whose input is the amino acid sequence. Mem Brain consists of specialized modules for predicting transmembrane helices, residue–residue contacts and relative accessible surface area of a-helical membrane proteins. Mem Brain achieves aprediction accuracy of 97.9% of ATMH, 87.1% of AP,3.2 ± 3.0 of N-score, 3.1 ± 2.8 of C-score. Mem BrainContact obtains 62%/64.1% prediction accuracy on training and independent dataset on top L/5 contact prediction,respectively. And Mem Brain-Rasa achieves Pearson correlation coefficient of 0.733 and its mean absolute error of13.593. These prediction results provide valuable hints for revealing the structure and function of membrane *** Brain web server is free for academic use and available at ***/bioinf/Mem Brain/.

关键词： Transmembrane a-helices Structure prediction Machine learning Contact map prediction Relative accessible surface area

Reward processing in Novelty Seekers: A Transdiagnostic Psychiatric Imaging Biomarker

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BIOLOGICAL PSYCHIATRY 2021年第8期90卷 529-539页

作者： Qi, Shile Schumann, Gunter Bustillo, Juan Turner, Jessica A. Jiang, Rongtao Zhi, Dongmei Fu, Zening Mayer, Andrew R. Vergara, Victor M. Silva, Rogers F. Iraji, Armin Chen, Jiayu Damaraju, Eswar Ma, Xiaohong Yang, Xiao Stevens, Michael Mathalon, Daniel H. Ford, Judith M. Voyvodic, James Mueller, Bryon A. Belger, Aysenil Potkin, Steven G. Preda, Adrian Zhuo, Chuanjun Xu, Yong Chu, Congying Banaschewski, Tobias Barker, Gareth J. Bokde, Arun L. W. Quinlan, Erin Burke Desrivieres, Sylvane Flor, Herta Grigis, Antoine Garavan, Hugh Gowland, Penny Heinz, Andreas Martinot, Jean-Luc Martinot, Marie-Laure Paillere Artiges, Eric Nees, Frauke Orfanos, Dimitri Papadopoulos Paus, Tomas Poustka, Luise Hohmann, Sarah Frohner, Juliane H. Smolka, Michael N. Walter, Henrik Whelan, Robert Calhoun, Vince D. Sui, Jing [a]Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University Georgia Institute Technology and Emory University Atlanta Georgia [b]Department of Psychiatry University of New Mexico Albuquerque New Mexico [c]Department of Psychology Georgia State University Atlanta Georgia [d]Olin Neuropsychiatry Research Center Hartford Connecticut [e]Department of Psychiatry University of California San Francisco San Francisco California [f]Department of Radiology Duke University Durham North Carolina [g]Department of Psychiatry University of North Carolina at Chapel Hill Chapel Hill North Carolina [h]Department of Psychiatry University of Minnesota Minneapolis Minnesota [i]Department of Psychiatry University of California Irvine Irvine California [j]Departments of Psychiatry and Psychology University of Vermont Burlington Vermont [k]Centre for Population Neuroscience and Stratified Medicine Institute for Science and Technology of Brain-Inspired Intelligence Fudan University Shanghai China [l]University of Chinese Academy of Sciences Beijing China [dd]Department of Computer Science and Engineering Nanjing University of Aeronautics and Astronautics Nanjing China [m]Brainnetome Center and National Laboratory of Pattern Recognition Institute of Automation Chinese Academy of Sciences Beijing China [ee]State Key Laboratory of Cognitive Neuroscience and Learning Beijing Normal University Beijing China [n]Psychiatric Laboratory and Mental Health Center the State Key Laboratory of Biotherapy West China Hospital of Sichuan University Chengdu China [o]Department of Psychiatric-Neuroimaging-Genetics and Morbidity Laboratory Nankai University Affiliated Anding Hospital Tianjin China [p]Department of Humanities and Social Science Shanxi Medical University Taiyuan China [q]Department of Psychiatry and Psychotherapy Charité – Universitätsmedizin Berlin Campus Charité Mitte corporate member of Freie Universität Berlin Humboldt-Univers

BACKGROUND: Dysfunctional reward processing is implicated in multiple mental disorders. Novelty seeking (NS) assesses preference for seeking novel experiences, which is linked to sensitivity to reward environmental cues. METHODS: A subset of 14-year-old adolescents (imageN) with the top 20% ranked high-NS scores was used to identify high-NS-associated multimodal components by supervised fusion. These features were then used to longitudinally predict five different risk scales for the same and unseen subjects (an independent dataset of subjects at 19 years of age that was not used in predictive modeling training at 14 years of age) (within imageN, n z 1100) and even for the corresponding symptom scores of five types of patient cohorts (non-imageN), including drinking (n = 313), smoking (n = 104), attention-deficit/hyperactivity disorder (n = 320), major depressive disorder (n = 81), and schizophrenia (n = 147), as well as to classify different patient groups with diagnostic labels. RESULTS: Multimodal biomarkers, including the prefrontal cortex, striatum, amygdala, and hippocampus, associated with high NS in 14-year-old adolescents were identified. The prediction models built on these features are able to longitudinally predict five different risk scales, including alcohol drinking, smoking, hyperactivity, depression, and psychosis for the same and unseen 19-year-old adolescents and even predict the corresponding symptom scores of five types of patient cohorts. Furthermore, the identified reward-related multimodal features can classify among attention-deficit/hyperactivity disorder, major depressive disorder, and schizophrenia with an accuracy of 87.2%. CONCLUSIONS: Adolescents with higher NS scores can be used to reveal brain alterations in the reward-related system, implicating potential higher risk for subsequent development of multiple disorders. The identified high-NS- associated multimodal reward-related signatures may serve as a transdiagnostic neuroimaging bi

关键词： ADHD Attention-deficit/hyperactivity disorder Major depressive disorders MDD Novelty seeking Reward processing Schizophrenia Substance use

DAmageNet: A universal adversarial dataset

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arXiv 2019年

作者： Chen, Sizhe Huang, Xiaolin He, Zhengbao Sun, Chengjin Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University MOE Key Laboratory of System Control and Information Processing 800 Dongchuan Road Shanghai200240 China

It is now well known that deep neural networks (DNNs) are vulnerable to adversarial attack. Adversarial samples are similar to the clean ones, but are able to cheat the attacked DNN to produce incorrect predictions in high confidence. But most of the existing adversarial attacks have high success rate only when the information of the attacked DNN is well-known or could be estimated by massive queries. A promising way is to generate adversarial samples with high transferability. By this way, we generate 96020 transferable adversarial samples from original ones in imageNet. The average difference, measured by root means squared deviation, is only around 3.8 on average. However, the adversarial samples are misclassified by various models with an error rate up to 90%. Since the images are generated independently with the attacked DNNs, this is essentially zero-query adversarial attack. We call the dataset DAmageNet, which is the first universal adversarial dataset that beats many models trained in imageNet. By finding the drawbacks, DAmageNet could serve as a benchmark to study and improve robustness of DNNs. DAmageNet could be downloaded in http://***/Show/56/122 Copyright © 2019, The Authors. All rights reserved.

关键词： Deep neural networks

Web Page Classification Algorithm Based on Semi-Supervised Support Vector Machine 2

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Web Page Classification Algorithm Based on Semi-Supervised S...

2nd IEEE Advanced Information Management, Communicates, Electronic and Automation Control Conference, IMCEC 2018

作者： Huang, Wenqing You, Hui Zhejiang Sci-Tech University Institute of Computer Vision Image Processing and Pattern Recognition Acceptable School of Information Hangzhou China

ISBN: (纸本)9781538618035

Most web page classification algorithms are learning algorithms under the single-instance single-label framework. Multi-Instance Multi-Label learning is a new machine learning framework. MIMLSVM+ algorithm, using degenerate strategy to transform multiple instances into single instances, and then decomposing multiple labels into a series of two types of classification problems, that is, building an SVM for each label. Because the MIMLSVM+ algorithm degrades the multi-label problem into a series of two types of classification problems, the processing of each label will lose the contact information between the labels independently. Therefore, multi-tasking technology is introduced to make use of the multi-tasking learning framework based on nuclear to validate the MIMLSVM+ expand, get E-MIMLSVM+ algorithm. The paper improves E-MIMLSVM+ algorithm by using the semi-supervised learning method. Experimental results show that the proposed method can achieve higher classification accuracy. © 2018 IEEE.

关键词： Learning algorithms