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IEEE International Conference on Acoustics, Speech and Signal processing

作者： Zhiqiang Xie Enmei Tu Hao Zheng Yun Gu Jie Yang Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Institute of Medical Robotics Shanghai Jiao Tong University Shanghai China

ISBN: (纸本)9781728176055;9781728176062

Segmentation of skin lesions is important for disease diagnoses and treatment planning. Over the years, semi-supervised methods using pseudo labels have boosted the segmentation performance with limited labeled data and abundant unlabeled data. However, the unreliable targets in pseudo labels might lead to meaningless guidance for unlabeled data. In this paper, to solve this issue, we propose a novel confidence aware semi-supervised learning method based on a mean teacher scheme. Concretely, we design a confidence module to predict the model confidence guided by the True Class Probability. Then in the mean teacher framework, the student model gradually learns trustworthy targets from teacher model. To further improve the segmentation quality, we fine-tune the student model with reliable content in pseudo labels. We conduct extensive experiments on 2018 ISIC skin lesion segmentation dataset and our method outperforms other state-of-the-art semi-supervised approaches.

关键词： Conferences Semisupervised learning Signal processing Predictive models Skin Planning Lesions

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Depth Prior-Based Stable Tensor Decomposition for Video Snow Removal

SSRN

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SSRN 2023年

作者： Li, Yongji Wang, Luping Jia, Zhenhong Yang, Jie Kasabov, Nikola School of Electronics and Communication Engineering Sun Yat-sen University Guangzhou510275 China College of Information Science and Engineering Xinjiang University Urumqi830046 China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai200400 China Knowledge Engineering and Discovery Research Institute Auckland University of Technology Auckland1020 New Zealand

Heavy snow seriously degrades the performance of outdoor computer vision systems. Near- and far-field snowflakes in heavy snow videos exhibit distinctly disparate physical properties. To address this issue, this research proposes a video desnowing model that utilizes stable tensor decomposition with snow depth prior information. Initially, the depth of snowflakes is transformed by their speeds calculated from the optical flow field of snowfall. Next, the noise level in backgrounds is available by dense snow. In contrast to previous tensor decomposition (TD), the introduction of a noise term enhances the stability of the depth prior-based stable tensor decomposition (DP-STD) in addressing heavy snowfall. This leads to more efficient and accurate restoration of underlying nonsnow structure. Inspired by biomimicry, the snow on moving objects (MOs) is removed by the adaptive mimesis region of interest (AM-ROI). Both synthetic and real snowfall experimental results show that our proposed desnowing model is more effective than the current SOTA algorithm in removing heavy snow. © 2023, The Authors. All rights reserved.

关键词： Snow

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LRTHR-Net: A Low-Resolution-to-High-Resolution Framework to Iteratively Refine the Segmentation of Thyroid Nodule in Ultrasound images 23rd

LRTHR-Net: A Low-Resolution-to-High-Resolution Framework to ...

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Anatomical Brain Barriers to Cancer Spread: Segmentation from CT and MR images Challenge, ABCs 2020, Learn2Reg Challenge, L2R 2020 and Thyroid Nodule Segmentation and Classification in Ultrasound images Challenge, TN-SCUI 2020 held in conjunction with 23rd International Conference on Medical image Computing and Computer-Assisted Intervention, MICCAI 2020

作者： Chen, Huai Song, Shaoli Wang, Xiuying Wang, Renzhen Meng, Deyu Wang, Lisheng Institute of Image Processing and Pattern Recognition Department of Automation Shanghai Jiao Tong University Shanghai200240 China Department of Nuclear Medicine Fudan University Shanghai Cancer Center Shanghai China School of Computer Science The University of Sydney Sydney Australia School of Mathematics and Statistics Xi’an Jiaotong University Xi’an China

ISBN: (纸本)9783030718268

The thyroid nodule is quickly increasing worldwide and the thyroid ultrasound is the key tool for the diagnosis of it. For the subtle difference between malignant and benign nodules, segmenting lesions is the crucial preliminary step for diagnosis. In this paper, we propose a low-resolution-to-high-resolution segmentation framework for TN-SCUI2020 challenge to alleviate the workload of clinicians and improve the efficiency of diagnosis. Specifically speaking, in order to integrate multi-scale information, several low-resolution segmenting results are obtained firstly and combined with a high-resolution image to refine them and obtain high-resolution results. Secondly, iterative-transfer is proposed to effectively initialize network based on previous trained one on small-scale images. Finally, ensemble refinement is introduced to utilize multiple models to refine the segmentation again. Experimental results showed the effectiveness of the proposed framework. And we won the 2nd place in the segmentation task of TN-SCUI2020. © 2021, Springer Nature Switzerland AG.

关键词： Ultrasonics

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A competition-based image saliency model 6

A competition-based image saliency model

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Optoelectronic Imaging and Multimedia Technology VI 2019

作者： Li, Yang Mou, Xuanqin Institute of Image Processing and Pattern Recognition Xian Jiaotong University China

ISBN: (数字)9781510630925

ISBN: (纸本)9781510630918

Competition for visual representation is an important mechanism for selective visual attention. The traditional global distinctiveness based saliency models usually compute the distinctiveness to measure saliency via comparing the difference of image patches in various spaces. In this paper, we propose to use an improved neural competition model to replace the comparison. The pairwise competition responses for a patch to all of the other patches are summed up to represent the distinctiveness of that patch. Particularly, the competition response is computed by a neural competition model with the dissimilarity bias and the gradient based feature inputs. Experimental results validate that the proposed model presents high effectiveness in saliency detection by outperforming nine state-of-the-art models. © 2019 SPIE.

关键词： Behavioral research

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Isoform Function Prediction Based on Heterogeneous Graph Attention Networks

Isoform Function Prediction Based on Heterogeneous Graph Att...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Kuo Guo Yifan Li Hao Chen Hong-Bin Shen Yang Yang Department of Computer Science and Engineering Shanghai Jiao Tong University and Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Shanghai China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University and Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai China Computational Biology Department School of Computer Science Carnegie Mellon University Pittsburgh PA USA

Isoforms refer to different mRNA molecules transcribed from the same gene, which can be translated into proteins with varying structures and functions. Predicting the functions of isoforms is an essential topic in bioinformatics as it can provide valuable insights into the intricate mechanisms of gene regulation and biological processes. Conventionally, gene function labels are standardized in Gene Ontology (GO) terms. However, traditional methods for predicting isoform function are largely limited by the absence of isoform-specific labels, sparse annotations, and the vast number of GO terms. To address these issues, we propose HANIso, a deep learning-based method for isoform function prediction. HANIso leverages a pretrained protein language model to extract features from protein sequences. It also integrates heterogeneous information, such as isoform sequence features, GO annotations, and isoform interaction data, using a Heterogeneous Graph Attention Network (HAN). This allows the model to learn the importance of different sources of information and their semantic relationships through the attention mechanism. Our method can predict function labels at both the gene level and isoform level. We conduct experiments on two species datasets, and the results demonstrate that our method outperforms existing methods on both AUROC and AUPRC. HANIso has the potential to overcome the limitations of traditional methods and provide a more accurate and comprehensive understanding of isoform function.

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Transfer Learning of Fuzzy Spatio-Temporal Rules in the NeuCube Brain-Inspired Spiking Neural Network: A Case Study on EEG Spatio-temporal Data

TechRxiv

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TechRxiv 2022年

作者： Kasabov, Nikola K. Tan, Yongyao Doborjeh, Maryam Tu, Enmei Yang, Jie School of Engineering Computer and Mathematical Science KEDRI Auckland University of Technology New Zealand Intelligent Systems Research Centre University of Ulster United Kingdom Bulgarian Academy of Sciences Bulgaria Institute of Image Processing and Pattern Recognition Shanghai Jiao Tiong University China

The paper demonstrates for the first time that a brain-inspired spiking neural network (SNN) architecture can be used not only to learn spatio-temporal data, but also to extract fuzzy spatio-temporal rules from such data and to update these rules incrementally in a transfer learning mode. We propose a method, where a SNN model learns incrementally new time-space data related to new classes/tasks/categories, always utilising some previously learned knowledge, and presents the evolved knowledge as fuzzy spatio-temporal rules. Similarly, to how the brain manifests transfer learning, these SNN models do not need to be restricted in number of layers, neurons in each layer, etc. as they adopt self-organising learning principles. The continuously evolved fuzzy rules from spatio-temporal data are interpretable for a better understanding of the processes that generate the data. The proposed method is based on a brain-inspired SNN architecture NeuCube and is illustrated on tasks of incremental and transfer learning and knowledge transfer using spatio-temporal EEG data measuring brain activity, when persons performing tasks in space and time. The method is a general one and opens the field to create new types of adaptable and explainable AI systems for applications across domain areas, e.g. brain-machine interfaces, robotics, speech and sound processing, cognitive studies and the creation of lifelong-learning cognitive machines. © 2022, CC BY.

关键词： Brain

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Fdflownet: Fast Optical Flow Estimation Using A Deep Lightweight Network

Fdflownet: Fast Optical Flow Estimation Using A Deep Lightwe...

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IEEE International Conference on image processing

作者： Lingtong Kong Jie Yang Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China

ISBN: (数字)9781728163956

ISBN: (纸本)9781728163963

Significant progress has been made for estimating optical flow using deep neural networks. Advanced deep models achieve accurate flow estimation often with a considerable computation complexity and time-consuming training processes. In this work, we present a lightweight yet effective model for real-time optical flow estimation, termed FDFlowNet (fast deep flownet). We achieve better or similar accuracy on the challenging KITTI and Sintel benchmarks while being about 2 times faster than PWC-Net. This is achieved by a carefully-designed structure and newly proposed components. We first introduce an U-shape network for constructing multi-scale feature which benefits upper levels with global receptive field compared with pyramid network. In each scale, a partial fully connected structure with dilated convolution is proposed for flow estimation that obtains a good balance among speed, accuracy and number of parameters compared with sequential connected and dense connected structures. Experiments demonstrate that our model achieves state-of-the-art performance while being fast and lightweight.

关键词： Estimation Optical imaging Convolution Adaptive optics Optical fiber networks Computational modeling Training

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SliceProp: A Slice-Wise Bidirectional Propagation Model for Interactive 3D Medical image Segmentation

SliceProp: A Slice-Wise Bidirectional Propagation Model for ...

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Medical Artificial Intelligence (MedAI), IEEE International Conference on

作者： Xin Xu Wenjing Lu Jiahao Lei Peng Qiu Hong-Bin Shen Yang Yang Department of Computer Science and Engineering Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Shanghai Jiao Tong University Shanghai China Department of Vascular Surgery Shanghai Ninth People's Hospital Shanghai Jiao Tong University School of Medicine Institute of Image Processing and Pattern Recognition and Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai Jiao Tong University Shanghai China

Interactive medical image segmentation methods have become increasingly popular in recent years. These methods combine manual labeling and automatic segmentation, reducing the workload of annotation while maintaining high accuracy. However, most current interactive segmentation frameworks are limited to 2D image data, and are not suitable for 3D image data due to the large size and high complexity of 3D data, as well as the challenges posed by information asymmetry and sparse annotation. In this paper, we propose SliceProp, an interactive segmentation framework that implements slice-wise Label Bidirectional Propagation (LBP) for 3D medical image segmentation. SliceProp extends the interactive 2D image segmentation algorithm to 3D image segmentation, and can handle 3D data with large size and high complexity. Moreover, equipped with a Backtracking Feedback Check (BFC) module, SliceProp effectively addresses the issues of information asymmetry and spatial sparse annotation in 3D medical image segmentation. Additionally, we adopt an uncertainty-based criterion to pri-oritize the slices to be refined interactively, which enhances the efficiency of the interaction process by enabling the model to focus on the regions with the most unreliable predictions. SliceProp is evaluated on two datasets and achieves promising results compared to state-of-the-art methods.

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BREAK: BRONCHI RECONSTRUCTION BY GEODESIC TRANSFORMATION AND SKELETON EMBEDDING

arXiv

引用

arXiv 2022年

作者： Yu, Weihao Zheng, Hao Zhang, Minghui Zhang, Hanxiao Sun, Jiayuan Yang, Jie Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China Institute of Medical Robotics Shanghai Jiao Tong University Shanghai China Department of Respiratory and Critical Care Medicine Department of Respiratory Endoscopy Shanghai Chest Hospital Shanghai Engineering Research Center of Respiratory Endoscopy China

Airway segmentation is critical for virtual bronchoscopy and computer-aided pulmonary disease analysis. In recent years, convolutional neural networks (CNNs) have been widely used to delineate the bronchial tree. However, the segmentation results of the CNN-based methods usually include many discontinuous branches, which need manual repair in clinical use. A major reason for the breakages is that the appearance of the airway wall can be affected by the lung disease as well as the adjacency of the vessels, while the network tends to overfit these special patterns in the training set. To learn robust features for these areas, we design a multi-stage framework that adopts the geodesic distance transform to capture the intensity changes between airway lumen and wall. Another reason for the breakages is the intra-class imbalance. Since the volume of the peripheral bronchi may be much smaller than the large branches in an input patch, the common segmentation loss is not sensitive to the breakages among the distal branches. Therefore, in this paper, a breakage-sensitive regularization term is designed and can be easily combined with other loss functions. Extensive experiments are conducted on publicly available datasets. Compared with state-of-the-art methods, our framework can detect more branches while maintaining competitive segmentation performance. Copyright © 2022, The Authors. All rights reserved.

关键词： Computer aided analysis

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Indoor Elderly Fall recognition System Based on Target Detection and Self-attention Model

Indoor Elderly Fall Recognition System Based on Target Detec...

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作者： Min Liu Xufeng Ling Jie,Yang School of Health Tianhua College Shanghai Normal University AI School Tianhua College Shanghai Normal University Institute of Image Processing and Pattern Recognition Shanghai Jiaotong University

With the increasing aging of the society,a series of consequences caused by falls of the elderly have become a serious medical problem and a real social *** at the fall behavior of the elderly,the research and development of human fall recognition technology has practical application *** paper proposes a method to recognize human targets in indoor images using target detection technology,and then use the trained neural network based on Self-attention technique named Vision Transformer(ViT) to recognize the falling posture of the ***,the target detection model is optimized and trained for indoor scene,so that the model can accurately detect human targets in indoor scene;Next,the indoor scene human target image is preprocessed,and the indoor human pose image data set is constructed;Then,the data set is used to train the ViT depth network,and enable it to correctly classify five postures(standing,sitting,lying,bending and crawling).The experimental results show that ViT network achieves high accuracy and excellent generalization capacity for the above 5 human posture and can realize the recognition of elderly falls.

关键词： component Elderly fall recognition Self-Attention Deep Learning

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