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arXiv 2018年

作者： Qin, Yulei Wen, Juan Zheng, Hao Huang, Xiaolin Yang, Jie Song, Ning Zhu, Yue-Min Wu, Lingqian Yang, Guang-Zhong Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai200240 China Center for Medical Genetics School of Life Sciences Central South University Changsha410078 China Shanghai Key Laboratory of Reproductive Medicine School of Medicine Shanghai Jiao Tong University Shanghai200025 China Diagens-Hangzhou Hangzhou311121 China University Lyon INSA Lyon CNRS INSERM CREATIS UMR 5220 U1206F-69621 France Hamlyn Centre for Robotic Surgery Imperial College London SW72AZ United Kingdom

Chromosome classification is critical for karyotyping in abnormality diagnosis. To expedite the diagnosis, we present a novel method named Varifocal-Net for simultaneous classification of chromosomes type and polarity using deep convolutional networks. The approach consists of one global-scale network (G-Net) and one local-scale network (L-Net). It follows three stages. The first stage is to learn both global and local features. We extract global features and detect finer local regions via the G-Net. By proposing a varifocal mechanism, we zoom into local parts and extract local features via the L-Net. Residual learning and multi-task learning strategies are utilized to promote high-level feature extraction. The detection of discriminative local parts is fulfilled by a localization subnet of the G-Net, whose training process involves both supervised and weakly-supervised learning. The second stage is to build two multi-layer perceptron classifiers that exploit features of both two scales to boost classification performance. The third stage is to introduce a dispatch strategy of assigning each chromosome to a type within each patient case, by utilizing the domain knowledge of karyotyping. Evaluation results from 1909 karyotyping cases showed that the proposed Varifocal-Net achieved the highest accuracy per patient case (%) of 99.2 for both type and polarity tasks. It outperformed state-of-the-art methods, demonstrating the effectiveness of our varifocal mechanism, multi-scale feature ensemble, and dispatch strategy. The proposed method has been applied to assist practical karyotype diagnosis. Copyright © 2018, The Authors. All rights reserved.

关键词： Computer aided diagnosis

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Mixed one-bit compressive sensing with application to overexposure correction for CT reconstruction

arXiv

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arXiv 2017年

作者： Huang, Xiaolin Xia, Yan Shi, Lei Huang, Yixing Yan, Ming Hornegger, Joachim Maier, Andreas Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Department of Radiology Stanford University CA United States School of Mathematical Sciences Fudan University Shanghai China Pattern Recognition Lab of Friedrich-Alexander-Universität Erlangen-Nürnberg Erlangen Germany Department of Computational Mathematics Science and Engineering Michigan State University MI United States

When a measurement falls outside the quantization or measurable range, it becomes saturated and cannot be used in classical reconstruction methods. For example, in C-arm angiography systems, which provide projection radiography, fluoroscopy, digital subtraction angiography, and are widely used for medical diagnoses and interventions, the limited dynamic range of C-arm flat detectors leads to overexposure in some projections during an acquisition, such as imaging relatively thin body parts (e.g., the knee). Aiming at overexposure correction for computed tomography (CT) reconstruction, we in this paper propose a mixed one-bit compressive sensing (M1bitCS) to acquire information from both regular and saturated measurements. This method is inspired by the recent progress on one-bit compressive sensing, which deals with only sign observations. Its successful applications imply that information carried by saturated measurements is useful to improve recovery quality. For the proposed M1bit-CS model, alternating direction methods of multipliers is developed and an iterative saturation detection scheme is established. Then we evaluate M1bit-CS on one-dimensional signal recovery tasks. In some experiments, the performance of the proposed algorithms on mixed measurements is almost the same as recovery on unsaturated ones with the same amount of measurements. Finally, we apply the proposed method to overexposure correction for CT reconstruction on a phantom and a simulated clinical image. The results are promising, as the typical streaking artifacts and capping artifacts introduced by saturated projection data are effectively reduced, yielding significant error reduction compared with existing algorithms based on extrapolation. Copyright © 2017, The Authors. All rights reserved.

关键词： Compressed sensing

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Improve Signal Peptide Prediction by Using Functional Domain Information

Improve Signal Peptide Prediction by Using Functional Domain...

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International Congress on image and Signal processing, BioMedical Engineering and Informatics

作者： Yi-Ze Zhang Hong-Bin Shen Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University

ISBN: (纸本)9781509037117

Signal peptides are significant important in targeting the translocation of integral membrane proteins and secretory proteins. Due the high similarity between the transmembrane helices and signal peptides, classifiers have limit ability to discriminate the signal peptides from the transmembrane helices. To solve this problem, the protein functional domain information is applied in this method. For accurately identify the cleavage sites along the sequence, a subset of potential cleavage sites was firstly screened out by statistical machine learning rules, and then the final unique site was picked out according to its evolution conservation score. This method has been benchmarked on multiple datasets and the experimental results have shown its superiority.

关键词： Sequence evolution Signal peptide N-terminal transmembrane helix Functional domain

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Fault detection and isolation of sensor in time-delay systems based on space geometry method

Fault detection and isolation of sensor in time-delay system...

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IEEE Conference on Industrial Electronics and Applications (ICIEA)

作者： Dianfeng Qiao Qianshuai Cheng Yandong Hou Institute of Image Processing and Pattern Recognition Henan University Kaifeng China

ISBN: (纸本)9781467386456

This paper investigates sensor fault problems in time-delay systems with uncertain disturbances. Using the measurement equation, the sensor fault can be translated into the state inputs. Subsequently, a cluster of residual generators is designed by employing the space geometric method. The corresponding filter parameters are obtained based on the space geometric approach, then using H ∞ optimization technique reduce the effects of disturbance inputs on the residuals, at the same time, the residual generator is designed so that the residual signals and sensor faults satisfy one to one correspondence, which can be used to detect and isolate the sensor faults in time-delay systems with disturbance. Simulation results suggest the effectiveness and robustness of our proposed approach.

关键词： Conferences Industrial electronics Decision support systems Fault detection Optimization

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Correlation filter tracking via bootstrap learning

Correlation filter tracking via bootstrap learning

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IEEE International Conference on image processing

作者： Kunqi Gu Tao Zhou Fanghui Liu Jie Yang Yu Qiao Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China

In recent years, correlation filter based trackers outperform better than other trackers. Nevertheless, they only employ one feature and a single kernel, so they are usually not robust in complex scenes. In this paper, we derive a multi-feature and multi-kernel correlation filter based tracker which fully takes advantage of the invariance-discriminative power spectrums of various features and kernels to further improve the performance. A novel bootstrap learning method is utilized to obtain a strong classifier by fusing these weak kernel correlation filters (KCFs). Moreover, a new target scale estimation strategy is incorporated into our framework. The efficient and effective scale estimation method is based on target dictionary representation. The proposed method is tested on several videos and compared with seven state-of-the-art methods. Experimental results have provided further support to the effectiveness and robustness of the proposed method.

关键词： Kernel Target tracking Correlation Computational modeling Boosting Robustness Object tracking

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Fault detection and isolation of sensor in Markov jump systems based on space geometry method

Fault detection and isolation of sensor in Markov jump syste...

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Chinese Control Conference (CCC)

作者： Yandong Hou Dianfeng Qiao Qianshuai Cheng Ruirui Huang Institute of Image Processing and Pattern Recognition Henan University Kaifeng Henan CN

This paper investigates sensor fault problems in Markov jump systems with uncertain disturbances. Using the measurement equation, the sensor faults can be translated into the state inputs. Subsequently, a cluster of residual generators is designed by employing the space geometric method. The corresponding filter parameters are obtained based on the space geometric approach, then using H ∞ optimization technique reduce the effects of disturbance inputs on the residuals, at the same time, the residual generator is designed so that the residual signals and sensor faults satisfy one to one correspondence, which can be used to detect and isolate the sensor faults in Markov jump systems with disturbance. Simulation results demonstrate the efficiency of the proposed method.

关键词： Hafnium Decision support systems

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A MIL-based interactive approach for hotspot segmentation from bone scintigraphy

A MIL-based interactive approach for hotspot segmentation fr...

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International Conference on Acoustics, Speech, and Signal processing (ICASSP)

作者： Shijie Geng Jingyang Ma Xiaoguang Niu Shaoyong Jia Yu Qiao Jie Yang Institute of Image Processing and Pattern Recognition The Key Laboratory of System Control and Information Processing Ministry of Education China

ISBN: (纸本)9781479999897

Bone scintigraphy is widely used to diagnose bone diseases. Accurate hotspot segmentation is a critical task for tumor metastasis diagnosis. In this paper, we propose an interactive approach to detect and extract hotspots in thoracic region based on a new multiple instance learning (MIL) method called EM-MILBoost. We convert the segmentation problem to a multiple instance learning task by constructing positive and negative bags according to the input bounding box. In order to be robust against noisy input, we train a region-level hotspot classifier with EM-MILBoost and develop several segmentation strategies based on it. The experimental results demonstrate that our method outperforms other methods and is robust against various noisy input.

关键词： image segmentation Noise measurement Bones Training Indexes Belts Standards

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Unsupervised feature selection algorithm based on sparse representation 3

Unsupervised feature selection algorithm based on sparse rep...

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2016 3rd International Conference on Systems and Informatics, ICSAI 2016

作者： Cui, Guoqing Yang, Jie Zareapoor, Masoumeh Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Minhang District Shanghai China Jiechen Wang Complex Network and Control Lab Shanghai Jiao Tong University Minhang District Shanghai China

ISBN: (纸本)9781509055210

Feature selection, as a preprocessing step to machine learning, plays a pivotal role in removing irrelevant data, reducing dimensionality and improving performance evaluations. Recent years, sparse representation has become a useful tool for both supervised and unsupervised feature selection. So far, most of these algorithms still have many problems such as large computation load, performance with poor stability. Thus, this paper proposes a new unsupervised feature selection algorithm via sparse representation (UFSSR), with respect to efficiency and effectiveness. Firstly, this paper reconstructs part of data matrix via sparse representation, which makes the proposed algorithm be robust and independent of domain knowledge. Then, to reduce the reconstruction error, a new feature evaluation function is given to rank all features. Theoretical analysis and experiments compared with many popular algorithms on a set of datasets demonstrate the improvements brought by UFSSR. © 2016 IEEE.

关键词： Feature Selection

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Robust Face recognition via Low-rank Sparse Representation-based Classification

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International Journal of Automation and computing 2015年第6期12卷 579-587页

作者： Hai-Shun Du Qing-Pu Hu Dian-Feng Qiao Ioannis Pitas Institute of Image Processing and Pattern Recognition Henan University Department of Informatics Aristotle University of Thessaloniki

Face recognition has attracted great interest due to its importance in many real-world applications. In this paper,we present a novel low-rank sparse representation-based classification(LRSRC) method for robust face recognition. Given a set of test samples, LRSRC seeks the lowest-rank and sparsest representation matrix over all training samples. Since low-rank model can reveal the subspace structures of data while sparsity helps to recognize the data class, the obtained test sample representations are both representative and discriminative. Using the representation vector of a test sample, LRSRC classifies the test sample into the class which generates minimal reconstruction error. Experimental results on several face image databases show the effectiveness and robustness of LRSRC in face image recognition.

关键词： Face recognition image classification sparse repre

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Correction to: Internet gaming disorder: deficits in functional and structural connectivity in the ventral tegmental area-Accumbens pathway

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Brain imaging and behavior 2019年第4期13卷 1182页

作者： Ruonan Wang Min Li Meng Zhao Dahua Yu Yu Hu Corinde E Wiers Gene-Jack Wang Nora D Volkow Kai Yuan School of Life Science and Technology Xidian University Xi'an Shaanxi 710071 People's Republic of China. Engineering Research Center of Molecular and Neuro Imaging Ministry of Education Xi'an People's Republic of China. Inner Mongolia Key Laboratory of Pattern Recognition and Intelligent Image Processing School of Information Engineering Inner Mongolia University of Science and Technology Baotou Inner Mongolia 014010 People's Republic of China. National Institute on Alcoholism and Alcohol Abuse National Institutes of Health Bethesda MD 20892 USA. National Institute on Drug Abuse National Institutes of Health Bethesda MD 20892 USA. School of Life Science and Technology Xidian University Xi'an Shaanxi 710071 People's Republic of China. kyuan@***. Engineering Research Center of Molecular and Neuro Imaging Ministry of Education Xi'an People's Republic of China. kyuan@***. Inner Mongolia Key Laboratory of Pattern Recognition and Intelligent Image Processing School of Information Engineering Inner Mongolia University of Science and Technology Baotou Inner Mongolia 014010 People's Republic of China. kyuan@***. National Institute on Alcoholism and Alcohol Abuse National Institutes of Health Bethesda MD 20892 USA. kyuan@***. Guangxi Key Laboratory of Multi-Source Information Mining and Security Guangxi Normal University Guilin People's Republic of China. kyuan@***.

The original version of this article contained mistakes, and the authors would like to correct them. The correct details are given below.

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